ISEic1
- Family IS1
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012779 | ND | Edwardsiella ictaluri | Edwardsiella ictaluri 93-146 |
DNA section
IS Length : 764 bp
Ends
IR Length : 17/21
IRL : GGTAGTGACTCCAAATTAGTGTCGTGGTACTATTCGCCTTTTGGATAAGA
IRR : GGTCATGACTCAAATTTAGTGGTAATGGTTGATTGTTAGATACCAGCCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATTCTTTTG | TAAAACGC | TGACTTATTC | 8 |
ATTTCAAATG | GTATTTTG | CCATAAAAAA | 8 |
TGATAGCGCA | GGCATTCC | CGTGACAAAG | 8 |
ATCTCTCCGC | AATTCGTG | CGTCCGTTTG | 8 |
ACCAATTCCC | CGATTTTGGG | 0 | |
CGTCGATTTC | GAATCATGTG | 0 | |
AGCAAAAAAG | CAGTTAGTGG | 0 |
DNA sequence
GGTAGTGACTCCAAATTAGTGTCGTGGTACTATTCGCCTTTTGGATAAGAAATGGCAAAGATTGATGTGGTTTGCCCCCGCTGCACCAAAACTCAGGGAG
TTATCCGTAATGGTCACTCCACTTCTGGCGCTCAGCTCTATCGCTGCAAGCTCTGCCTGAAAACCTTCCAGCTCAACTTTCAATATAACGCAGCTAAACC
CAACACCCATCAATCCATTATTGCTATGGCAATGAACGGCTCCGGATGTCGTGACACGGCACGGGTTCTTGATATCAGCCTCAATACTGTCCTCCGCCAC
CTAAAAAACGGGAACCGAGACAGCGAGCGCAACACGTAGAGCCGGGAGCCGAAGTCGTTATCTGCTGTGAAGCTGATGAACAGTGGTCATTCGTTCGTTG
TAAGAGCAATCCTCGCTGGCTCTTCTATGCGTATGACCGTATTCGAAAGCGGGTTCTTGCTCATGTCTTTGGCCCTCGAAATGCGTTGACGTTACAGCGG
CTTCTAGCGTTAGTGAGAAAATTTAATATTGCCTTCTACATGACCGATGCCTGGCCGGTATACCGGACGCTGCTGGATCCAGCTCACCATGTAGTCAGCA
AGAAATATACCCAACGCATAGAACGCCATAACTTGAATCTGCGAACTCATCTCAAACGGCTTACCCGAAGGACAATCTGCTTCTCCAAATCAGAAGAAAT
GCACGATAAGGTCATCGGCTGGTATCTAACAATCAACCATTACCACTAAATTTGAGTCATGACC
TTATCCGTAATGGTCACTCCACTTCTGGCGCTCAGCTCTATCGCTGCAAGCTCTGCCTGAAAACCTTCCAGCTCAACTTTCAATATAACGCAGCTAAACC
CAACACCCATCAATCCATTATTGCTATGGCAATGAACGGCTCCGGATGTCGTGACACGGCACGGGTTCTTGATATCAGCCTCAATACTGTCCTCCGCCAC
CTAAAAAACGGGAACCGAGACAGCGAGCGCAACACGTAGAGCCGGGAGCCGAAGTCGTTATCTGCTGTGAAGCTGATGAACAGTGGTCATTCGTTCGTTG
TAAGAGCAATCCTCGCTGGCTCTTCTATGCGTATGACCGTATTCGAAAGCGGGTTCTTGCTCATGTCTTTGGCCCTCGAAATGCGTTGACGTTACAGCGG
CTTCTAGCGTTAGTGAGAAAATTTAATATTGCCTTCTACATGACCGATGCCTGGCCGGTATACCGGACGCTGCTGGATCCAGCTCACCATGTAGTCAGCA
AGAAATATACCCAACGCATAGAACGCCATAACTTGAATCTGCGAACTCATCTCAAACGGCTTACCCGAAGGACAATCTGCTTCTCCAAATCAGAAGAAAT
GCACGATAAGGTCATCGGCTGGTATCTAACAATCAACCATTACCACTAAATTTGAGTCATGACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
288 bp | 95 aa | 52 | 339 | + | No |
Description : First part of the transposase
ORF sequence :
MAKIDVVCPRCTKTQGVIRNGHSTSGAQLYRCKLCLKTFQLNFQYNAAKPNTHQSIIAMAMNGSGCRDTARVLDISLNTVLRHLKNGNRDSERNT
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
477 bp | 158 aa | 273 | 749 | + | No |
Description : Second part of the transposase
ORF sequence :
YQPQYCPPPPKKREPRQRAQHVEPGAEVVICCEADEQWSFVRCKSNPRWLFYAYDRIRKRVLAHVFGPRNALTLQRLLALVRKFNIAFYMTDAWPVYRTL
LDPAHHVVSKKYTQRIERHNLNLRTHLKRLTRRTICFSKSEEMHDKVIGWYLTINHYH
LDPAHHVVSKKYTQRIERHNLNLRTHLKRLTRRTICFSKSEEMHDKVIGWYLTINHYH
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
698 bp | 232 aa | 52 | 749 | + | Yes |
Chemistry : DDE
ORF sequence :
MAKIDVVCPRCTKTQGVIRNGHSTSGAQLYRCKLCLKTFQLNFQYNAAKPNTHQSIIAMAMNGSGCRDTARVLDISLNTVLRHLKKREPRQRAQHVEPGA
EVVICCEADEQWSFVRCKSNPRWLFYAYDRIRKRVLAHVFGPRNALTLQRLLALVRKFNIAFYMTDAWPVYRTLLDPAHHVVSKKYTQRIERHNLNLRTH
LKRLTRRTICFSKSEEMHDKVIGWYLTINHYH
EVVICCEADEQWSFVRCKSNPRWLFYAYDRIRKRVLAHVFGPRNALTLQRLLALVRKFNIAFYMTDAWPVYRTLLDPAHHVVSKKYTQRIERHNLNLRTH
LKRLTRRTICFSKSEEMHDKVIGWYLTINHYH
Blast result :
Comments
ISEic1 is 71% aa similar to IS1X1.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] ISfinder annotation (2010)
2] Williams,M.L., Gillaspy,A.F., Dyer,D.W., Thune,R.L., Waldbieser,G.C., Schuster,S.C., Gipson,J., Zaitshik,J., Landry,C. and Lawrence,M.L. (2009) Direct submission Genbank.
2] Williams,M.L., Gillaspy,A.F., Dyer,D.W., Thune,R.L., Waldbieser,G.C., Schuster,S.C., Gipson,J., Zaitshik,J., Landry,C. and Lawrence,M.L. (2009) Direct submission Genbank.