ISPan1
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
CP001875 | ND | Pantoea ananatis | Pantoea ananatis LMG 20103 |
DNA section
IS Length : 1056 bp
Ends
IR Length : 22/24
IRL : GGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGCAGGATCAGAACACG
IRR : GGCTTTGTTGAATAAATCAAATTTCGGGTAAGTATCCCCGTGCCGGGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTTACTCTCC | CCTGAGCTTT | 0 |
DNA sequence
GGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGCAGGATCAGAACACGCATTCTCCTGACAATACAGGCAGTCCCGTGGCAAACCAGAAGTTCAAAAT
CACCAACTGGCCTACCTACAACAAAGCCCTCATCAACCGTGTCTCCATCACTTTCTGGCTTGACGATGAGGCGATTCAGGCCTGGTATGAGTCAGCAGCG
CCTTCATCCCGGGGAAGACCTCAGCGTTATTCTGACCTTGCTATCACGACTGTCCTGATGATTAAACGCCTGTTCCGGCTGGCCCTGCGAGCTGCTCAGG
GCTTTATTGATTCCGTTTTTGCCCTGATGGACGTTCCTCTGCGATCCCCGGATTACACCAGTGTCAGTAAGCGGGCGAAGTCGGTCAATGTCAGTTTCAA
AACGTCCACCCGGGGTGAAATCGCGCATCTGGTGATTGATTCCTCCGGGCTGAAAGTTTTCGGTGAAGGCGAATGGAAGGTCAAAAAACACGGCAAAGAG
CGCCGTCGTATCTGGCGAAAGCTGCACCTTGCTGTCGATGGTAAAACACATGAAATCATCTGTTCAGACCTGTCGCTGAACAACGTAACGGACTCAGAGG
CCTTCCCGGGACTTATCCGGCAGACGCACAGAAAAATCAGGGCAGCAGCGGTAGACGGAGCTTACGACACCCGGCTCTGTCACGATGAACTGCGGCGCAA
GAAAATCAGCGCGCTTATCCCGTCCAGGAAGAGCATGGGTTACTGGCCCGGTGAATACGCGTATCGCAACCGTGCTGTTGCGAATCAGCGCTTGAGCGGA
AGCAATGCCCGATGGAAATGGACAACAGATTACAATCGCCGCTCAATAGCGGAAACGGCGATGTATCAGGTGAAGCAGCTGTTCGGCGGTTCACTGACGC
TGCGGGATTATGATGGTCAGGTTACGGAGGCTATAGCCATGGTGCGCGCGTTGAACAAAATGACGAAAGCAGGTATGCCTGAAAGCGAGCGTATCGCCTG
AAAACGCAGCCCGGCACGGGGATACTTACCCGAAATTTGATTTATTCAACAAAGCC
CACCAACTGGCCTACCTACAACAAAGCCCTCATCAACCGTGTCTCCATCACTTTCTGGCTTGACGATGAGGCGATTCAGGCCTGGTATGAGTCAGCAGCG
CCTTCATCCCGGGGAAGACCTCAGCGTTATTCTGACCTTGCTATCACGACTGTCCTGATGATTAAACGCCTGTTCCGGCTGGCCCTGCGAGCTGCTCAGG
GCTTTATTGATTCCGTTTTTGCCCTGATGGACGTTCCTCTGCGATCCCCGGATTACACCAGTGTCAGTAAGCGGGCGAAGTCGGTCAATGTCAGTTTCAA
AACGTCCACCCGGGGTGAAATCGCGCATCTGGTGATTGATTCCTCCGGGCTGAAAGTTTTCGGTGAAGGCGAATGGAAGGTCAAAAAACACGGCAAAGAG
CGCCGTCGTATCTGGCGAAAGCTGCACCTTGCTGTCGATGGTAAAACACATGAAATCATCTGTTCAGACCTGTCGCTGAACAACGTAACGGACTCAGAGG
CCTTCCCGGGACTTATCCGGCAGACGCACAGAAAAATCAGGGCAGCAGCGGTAGACGGAGCTTACGACACCCGGCTCTGTCACGATGAACTGCGGCGCAA
GAAAATCAGCGCGCTTATCCCGTCCAGGAAGAGCATGGGTTACTGGCCCGGTGAATACGCGTATCGCAACCGTGCTGTTGCGAATCAGCGCTTGAGCGGA
AGCAATGCCCGATGGAAATGGACAACAGATTACAATCGCCGCTCAATAGCGGAAACGGCGATGTATCAGGTGAAGCAGCTGTTCGGCGGTTCACTGACGC
TGCGGGATTATGATGGTCAGGTTACGGAGGCTATAGCCATGGTGCGCGCGTTGAACAAAATGACGAAAGCAGGTATGCCTGAAAGCGAGCGTATCGCCTG
AAAACGCAGCCCGGCACGGGGATACTTACCCGAAATTTGATTTATTCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
969 bp | 322 aa | 33 | 1001 | + | No |
Chemistry : DDE
ORF sequence :
LQDQNTHSPDNTGSPVANQKFKITNWPTYNKALINRVSITFWLDDEAIQAWYESAAPSSRGRPQRYSDLAITTVLMIKRLFRLALRAAQGFIDSVFALMD
VPLRSPDYTSVSKRAKSVNVSFKTSTRGEIAHLVIDSSGLKVFGEGEWKVKKHGKERRRIWRKLHLAVDGKTHEIICSDLSLNNVTDSEAFPGLIRQTHR
KIRAAAVDGAYDTRLCHDELRRKKISALIPSRKSMGYWPGEYAYRNRAVANQRLSGSNARWKWTTDYNRRSIAETAMYQVKQLFGGSLTLRDYDGQVTEA
IAMVRALNKMTKAGMPESERIA
VPLRSPDYTSVSKRAKSVNVSFKTSTRGEIAHLVIDSSGLKVFGEGEWKVKKHGKERRRIWRKLHLAVDGKTHEIICSDLSLNNVTDSEAFPGLIRQTHR
KIRAAAVDGAYDTRLCHDELRRKKISALIPSRKSMGYWPGEYAYRNRAVANQRLSGSNARWKWTTDYNRRSIAETAMYQVKQLFGGSLTLRDYDGQVTEA
IAMVRALNKMTKAGMPESERIA
Blast result :
Comments
ISPan1 is 94% aa similar to IS903B.
References
1] ISfinder annotation (2010)
2] De Maayer,P., Chan,W.Y., Venter,S.N., Toth,I.K., Birch,P.R.J., Joubert,F. and Coutinho,T.A. (2010) Direct submission GenBank
2] De Maayer,P., Chan,W.Y., Venter,S.N., Toth,I.K., Birch,P.R.J., Joubert,F. and Coutinho,T.A. (2010) Direct submission GenBank