ISPan1

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CP001875 ND Pantoea ananatis
Pantoea ananatis LMG 20103
DNA section
IS Length : 1056 bp

Ends


IR Length : 22/24

IRL : GGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGCAGGATCAGAACACG
IRR : GGCTTTGTTGAATAAATCAAATTTCGGGTAAGTATCCCCGTGCCGGGCTG

Insertion site


Left flankDirect repeatRight flankDR Length
GTTACTCTCCCCTGAGCTTT0

DNA sequence

GGCTTTGTTGAATAAATCGAACTTTTGCTGAGTTGCAGGATCAGAACACGCATTCTCCTGACAATACAGGCAGTCCCGTGGCAAACCAGAAGTTCAAAAT
CACCAACTGGCCTACCTACAACAAAGCCCTCATCAACCGTGTCTCCATCACTTTCTGGCTTGACGATGAGGCGATTCAGGCCTGGTATGAGTCAGCAGCG
CCTTCATCCCGGGGAAGACCTCAGCGTTATTCTGACCTTGCTATCACGACTGTCCTGATGATTAAACGCCTGTTCCGGCTGGCCCTGCGAGCTGCTCAGG
GCTTTATTGATTCCGTTTTTGCCCTGATGGACGTTCCTCTGCGATCCCCGGATTACACCAGTGTCAGTAAGCGGGCGAAGTCGGTCAATGTCAGTTTCAA
AACGTCCACCCGGGGTGAAATCGCGCATCTGGTGATTGATTCCTCCGGGCTGAAAGTTTTCGGTGAAGGCGAATGGAAGGTCAAAAAACACGGCAAAGAG
CGCCGTCGTATCTGGCGAAAGCTGCACCTTGCTGTCGATGGTAAAACACATGAAATCATCTGTTCAGACCTGTCGCTGAACAACGTAACGGACTCAGAGG
CCTTCCCGGGACTTATCCGGCAGACGCACAGAAAAATCAGGGCAGCAGCGGTAGACGGAGCTTACGACACCCGGCTCTGTCACGATGAACTGCGGCGCAA
GAAAATCAGCGCGCTTATCCCGTCCAGGAAGAGCATGGGTTACTGGCCCGGTGAATACGCGTATCGCAACCGTGCTGTTGCGAATCAGCGCTTGAGCGGA
AGCAATGCCCGATGGAAATGGACAACAGATTACAATCGCCGCTCAATAGCGGAAACGGCGATGTATCAGGTGAAGCAGCTGTTCGGCGGTTCACTGACGC
TGCGGGATTATGATGGTCAGGTTACGGAGGCTATAGCCATGGTGCGCGCGTTGAACAAAATGACGAAAGCAGGTATGCCTGAAAGCGAGCGTATCGCCTG
AAAACGCAGCCCGGCACGGGGATACTTACCCGAAATTTGATTTATTCAACAAAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
969 bp322 aa331001+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

LQDQNTHSPDNTGSPVANQKFKITNWPTYNKALINRVSITFWLDDEAIQAWYESAAPSSRGRPQRYSDLAITTVLMIKRLFRLALRAAQGFIDSVFALMD
VPLRSPDYTSVSKRAKSVNVSFKTSTRGEIAHLVIDSSGLKVFGEGEWKVKKHGKERRRIWRKLHLAVDGKTHEIICSDLSLNNVTDSEAFPGLIRQTHR
KIRAAAVDGAYDTRLCHDELRRKKISALIPSRKSMGYWPGEYAYRNRAVANQRLSGSNARWKWTTDYNRRSIAETAMYQVKQLFGGSLTLRDYDGQVTEA
IAMVRALNKMTKAGMPESERIA

 

Blast result :
Comments
ISPan1 is 94% aa similar to IS903B.
References
1] ISfinder annotation (2010)
2] De Maayer,P., Chan,W.Y., Venter,S.N., Toth,I.K., Birch,P.R.J., Joubert,F. and Coutinho,T.A. (2010) Direct submission GenBank