ISPso3
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
AY311510 | Y | Paracoccus solventivorans | Paracoccus solventivorans DSM 11592 |
DNA section
IS Length : 1283 bp
Ends
IR Length : 14/18
IRL : GGGCACCTCGAAAAATTGCTCGGCCCGTATTGCTGCGGTATGAACGGGGG
IRR : GGGCACCTCGATTTTTGACCTTTTCCGGTCGCCGGGCTTGGGCTCGGCGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGTGATGAG | TTTA | CCTTCAAGAA | 4 |
DNA sequence
GGGCACCTCGAAAAATTGCTCGGCCCGTATTGCTGCGGTATGAACGGGGGTGATTGGCTGCTCGGGGCGTAACGATGGCACAGATGGGTTTTTTCGATCT
TTCAGACCGCTACGCGAGCCTGGACGCCAAGAGGGACCCGCTGGTCGAGATTGACGCCGTTGTGCCGGGGGAGGAGTTCCGCCCGACTCTGGAGCGGGTT
TGGCGCAAGCCCGAGGCGGAGCGGAAGTCGCGCGCCGGGCGCAAGCCGATGGACGCGGTGGTGATGTTCAAGACGCTGGTGCTGAGCGCGCTCTATAACC
TGTCCGACGACCATATCGAATACCATGTGCGTGATCGGCTATCCTTCATGCGGTTCCTCGGTCTCGGACTTGAGGACCGGGTGCCCGATGCCAAGACTGT
CTGGCTTTATCGCGAAGCGCTGGCGCAGGCGGGCATGGTGGAAGCGTTGTTCAAGCAATTCGACGGCTATCTTGCGCGACAGGGCTACATCGCGCGGGGA
GGGCAGATCCTCGATGCCTCCATCGTCCCGGTGCCGCGCAATCATAATACGCGTGATGAAAACAAGGCGATCAAGAACGGTGAGGTGCCTGAGGATTGGG
CGGACAAACCGGCCAAGCGGTCACAGAAGGACGTTGATGCCCGCTGGACCAAGAAGCACGGCAAATCCTATTACGGTTACAAGAACCACGTAAACGTGGA
CCGCAAGCACAAGCTGGTCCGCTGTTACCATGTCAGCGATGCCGCCCTGCATGACAGCCAAGCGGTGGACCACCTGCTGACGCGGGGCAACACCGGTGCG
GGTGTCTGGGCTGATCCCGCCTATCGGTCCGAGGAGATGGAAGCTAGGCTGCGCAGCATGAAGCTGAAGAGCCACATCCACCGCAAGGGCAAGCGCGGCA
AGCCGCTGACTGAACAGGCCAAGAGCAGCAATCGCACGAAATCTTCGGTGCGCGCGCGGGTCGAGCATGTCTTCGGCGCACAAGCCAATGACATGGGCGG
CACACTGGTGCGCACGATCGGCATGGTCCGGGCCAAGGCAAAGATCGGGATGAAGAACCTGGCTTACAACATGCGCCGCCTCGGCCAGTTGAGCCGCCTG
AACCCGTGCCCGGGCTGACCCCGGGGCGCGGAAATCACGTCGGGCGGCACGAAACGCCGCGCGCGACAGGGAAAGCATCAAAGACCCCATAGCGCGCAAG
GGCGCGGGCGGGCAGCATCACGCCAATTTTAAGCCGCCGAGCCCAAGCCCGGCGACCGGAAAAGGTCAAAAATCGAGGTGCCC
TTCAGACCGCTACGCGAGCCTGGACGCCAAGAGGGACCCGCTGGTCGAGATTGACGCCGTTGTGCCGGGGGAGGAGTTCCGCCCGACTCTGGAGCGGGTT
TGGCGCAAGCCCGAGGCGGAGCGGAAGTCGCGCGCCGGGCGCAAGCCGATGGACGCGGTGGTGATGTTCAAGACGCTGGTGCTGAGCGCGCTCTATAACC
TGTCCGACGACCATATCGAATACCATGTGCGTGATCGGCTATCCTTCATGCGGTTCCTCGGTCTCGGACTTGAGGACCGGGTGCCCGATGCCAAGACTGT
CTGGCTTTATCGCGAAGCGCTGGCGCAGGCGGGCATGGTGGAAGCGTTGTTCAAGCAATTCGACGGCTATCTTGCGCGACAGGGCTACATCGCGCGGGGA
GGGCAGATCCTCGATGCCTCCATCGTCCCGGTGCCGCGCAATCATAATACGCGTGATGAAAACAAGGCGATCAAGAACGGTGAGGTGCCTGAGGATTGGG
CGGACAAACCGGCCAAGCGGTCACAGAAGGACGTTGATGCCCGCTGGACCAAGAAGCACGGCAAATCCTATTACGGTTACAAGAACCACGTAAACGTGGA
CCGCAAGCACAAGCTGGTCCGCTGTTACCATGTCAGCGATGCCGCCCTGCATGACAGCCAAGCGGTGGACCACCTGCTGACGCGGGGCAACACCGGTGCG
GGTGTCTGGGCTGATCCCGCCTATCGGTCCGAGGAGATGGAAGCTAGGCTGCGCAGCATGAAGCTGAAGAGCCACATCCACCGCAAGGGCAAGCGCGGCA
AGCCGCTGACTGAACAGGCCAAGAGCAGCAATCGCACGAAATCTTCGGTGCGCGCGCGGGTCGAGCATGTCTTCGGCGCACAAGCCAATGACATGGGCGG
CACACTGGTGCGCACGATCGGCATGGTCCGGGCCAAGGCAAAGATCGGGATGAAGAACCTGGCTTACAACATGCGCCGCCTCGGCCAGTTGAGCCGCCTG
AACCCGTGCCCGGGCTGACCCCGGGGCGCGGAAATCACGTCGGGCGGCACGAAACGCCGCGCGCGACAGGGAAAGCATCAAAGACCCCATAGCGCGCAAG
GGCGCGGGCGGGCAGCATCACGCCAATTTTAAGCCGCCGAGCCCAAGCCCGGCGACCGGAAAAGGTCAAAAATCGAGGTGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 75 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MAQMGFFDLSDRYASLDAKRDPLVEIDAVVPGEEFRPTLERVWRKPEAERKSRAGRKPMDAVVMFKTLVLSALYNLSDDHIEYHVRDRLSFMRFLGLGLE
DRVPDAKTVWLYREALAQAGMVEALFKQFDGYLARQGYIARGGQILDASIVPVPRNHNTRDENKAIKNGEVPEDWADKPAKRSQKDVDARWTKKHGKSYY
GYKNHVNVDRKHKLVRCYHVSDAALHDSQAVDHLLTRGNTGAGVWADPAYRSEEMEARLRSMKLKSHIHRKGKRGKPLTEQAKSSNRTKSSVRARVEHVF
GAQANDMGGTLVRTIGMVRAKAKIGMKNLAYNMRRLGQLSRLNPCPG
DRVPDAKTVWLYREALAQAGMVEALFKQFDGYLARQGYIARGGQILDASIVPVPRNHNTRDENKAIKNGEVPEDWADKPAKRSQKDVDARWTKKHGKSYY
GYKNHVNVDRKHKLVRCYHVSDAALHDSQAVDHLLTRGNTGAGVWADPAYRSEEMEARLRSMKLKSHIHRKGKRGKPLTEQAKSSNRTKSSVRARVEHVF
GAQANDMGGTLVRTIGMVRAKAKIGMKNLAYNMRRLGQLSRLNPCPG
Blast result :
Comments
ISPso3 is 96% aa similar to ISPmar3.
ISPso3 has been identified by its transposition into entrapment vector pMEC1 (cI-tetA cassette). As judged from DNA hybridization analysis ISPso3 is present in 2 copies in the genome of Paracoccus solventivorans DSM 11592.
ISPso3 has been identified by its transposition into entrapment vector pMEC1 (cI-tetA cassette). As judged from DNA hybridization analysis ISPso3 is present in 2 copies in the genome of Paracoccus solventivorans DSM 11592.
References
1] Bartosik,D., Szymanik,M., and Baj,J. (2003) Appl. Environ. Microbiol. 69, 7002-7008.
2] Bartosik, D. (2010) Direct submission
2] Bartosik, D. (2010) Direct submission