ISPso3

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AY311510 Y Paracoccus solventivorans
Paracoccus solventivorans DSM 11592
DNA section
IS Length : 1283 bp

Ends


IR Length : 14/18

IRL : GGGCACCTCGAAAAATTGCTCGGCCCGTATTGCTGCGGTATGAACGGGGG
IRR : GGGCACCTCGATTTTTGACCTTTTCCGGTCGCCGGGCTTGGGCTCGGCGG

Insertion site


Left flankDirect repeatRight flankDR Length
GGGTGATGAGTTTACCTTCAAGAA4

DNA sequence

GGGCACCTCGAAAAATTGCTCGGCCCGTATTGCTGCGGTATGAACGGGGGTGATTGGCTGCTCGGGGCGTAACGATGGCACAGATGGGTTTTTTCGATCT
TTCAGACCGCTACGCGAGCCTGGACGCCAAGAGGGACCCGCTGGTCGAGATTGACGCCGTTGTGCCGGGGGAGGAGTTCCGCCCGACTCTGGAGCGGGTT
TGGCGCAAGCCCGAGGCGGAGCGGAAGTCGCGCGCCGGGCGCAAGCCGATGGACGCGGTGGTGATGTTCAAGACGCTGGTGCTGAGCGCGCTCTATAACC
TGTCCGACGACCATATCGAATACCATGTGCGTGATCGGCTATCCTTCATGCGGTTCCTCGGTCTCGGACTTGAGGACCGGGTGCCCGATGCCAAGACTGT
CTGGCTTTATCGCGAAGCGCTGGCGCAGGCGGGCATGGTGGAAGCGTTGTTCAAGCAATTCGACGGCTATCTTGCGCGACAGGGCTACATCGCGCGGGGA
GGGCAGATCCTCGATGCCTCCATCGTCCCGGTGCCGCGCAATCATAATACGCGTGATGAAAACAAGGCGATCAAGAACGGTGAGGTGCCTGAGGATTGGG
CGGACAAACCGGCCAAGCGGTCACAGAAGGACGTTGATGCCCGCTGGACCAAGAAGCACGGCAAATCCTATTACGGTTACAAGAACCACGTAAACGTGGA
CCGCAAGCACAAGCTGGTCCGCTGTTACCATGTCAGCGATGCCGCCCTGCATGACAGCCAAGCGGTGGACCACCTGCTGACGCGGGGCAACACCGGTGCG
GGTGTCTGGGCTGATCCCGCCTATCGGTCCGAGGAGATGGAAGCTAGGCTGCGCAGCATGAAGCTGAAGAGCCACATCCACCGCAAGGGCAAGCGCGGCA
AGCCGCTGACTGAACAGGCCAAGAGCAGCAATCGCACGAAATCTTCGGTGCGCGCGCGGGTCGAGCATGTCTTCGGCGCACAAGCCAATGACATGGGCGG
CACACTGGTGCGCACGATCGGCATGGTCCGGGCCAAGGCAAAGATCGGGATGAAGAACCTGGCTTACAACATGCGCCGCCTCGGCCAGTTGAGCCGCCTG
AACCCGTGCCCGGGCTGACCCCGGGGCGCGGAAATCACGTCGGGCGGCACGAAACGCCGCGCGCGACAGGGAAAGCATCAAAGACCCCATAGCGCGCAAG
GGCGCGGGCGGGCAGCATCACGCCAATTTTAAGCCGCCGAGCCCAAGCCCGGCGACCGGAAAAGGTCAAAAATCGAGGTGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1044 bp347 aa751118+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MAQMGFFDLSDRYASLDAKRDPLVEIDAVVPGEEFRPTLERVWRKPEAERKSRAGRKPMDAVVMFKTLVLSALYNLSDDHIEYHVRDRLSFMRFLGLGLE
DRVPDAKTVWLYREALAQAGMVEALFKQFDGYLARQGYIARGGQILDASIVPVPRNHNTRDENKAIKNGEVPEDWADKPAKRSQKDVDARWTKKHGKSYY
GYKNHVNVDRKHKLVRCYHVSDAALHDSQAVDHLLTRGNTGAGVWADPAYRSEEMEARLRSMKLKSHIHRKGKRGKPLTEQAKSSNRTKSSVRARVEHVF
GAQANDMGGTLVRTIGMVRAKAKIGMKNLAYNMRRLGQLSRLNPCPG

 

Blast result :
Comments
ISPso3 is 96% aa similar to ISPmar3.
ISPso3 has been identified by its transposition into entrapment vector pMEC1 (cI-tetA cassette). As judged from DNA hybridization analysis ISPso3 is present in 2 copies in the genome of Paracoccus solventivorans DSM 11592.
References
1] Bartosik,D., Szymanik,M., and Baj,J. (2003) Appl. Environ. Microbiol. 69, 7002-7008.

2] Bartosik, D. (2010) Direct submission