ISPze1
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826202 | Y | Paracoccus zeaxanthinifaciens | Paracoccus zeaxanthinifaciens ATCC 21588T |
DNA section
IS Length : 851 bp
Ends
IR Length : 13/18
IRL : GGGTCAGGACCCATTAATTTTCTTGATGCCGTCCTGTCGGCGTGATTCAC
IRR : GGCTCCAGACTCATTGATGGTCACAGCCAGAACATGACGGTGGCAGCGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GACGGCTGCA | TA | CTAACCGCTT | 2 |
DNA sequence
GGGTCAGGACCCATTAATTTTCTTGATGCCGTCCTGTCGGCGTGATTCACGCTCCCAAACAGGTGGGGGCATCATGAGTAATCTTTTCTGGCTGACGGAC
GAACAGATGGAGCGGCTGAAGCCGTTCTTCCCCAAGAGCCATGGTAAGCCGAGGGTCGATGACCGGCGCGTGCTGAGCGGCATAATCTTCATCAACCGCA
ATGGGTTGCGGTGGTGCGATGCGCCCCGGGAGTATGGCCCGCCCAAGACGCTCTACAACCGGTGGAAGCGCTGGAGCGAGATGGGCGTGTTTGCCAGGAT
CTTCGAGGGATTGGCCTCGGAGGCAACGGATCAGAAGACGCTGATGATTGATGCGACGTATCTGAAAGCCCATCGCACGGCGTCGAGCCTGCGGTCGAAA
AAGGGGGGCGTGGACGCCTGATTGGCAGGACTAAGGGCGGTATGAACACCAAGTTGCATGCCGTCACGGATGCCAGAGGCCGCCCACTCAAGTTTTTCAT
GACGGCCGGCCAAGTCAGCGATTACACCGGTGCAGCCGCGCTGCTGAGCAGCCTGCCTCGGGCGGACTGGCTGCTCGCCGACCGAGGCTATGATGCGGAT
TGGTTCCGCGACGCCCTGAAAGACAAGGGGATCAGGCCCTGCATCCCGGGCCGGAAGTCCCGCGGCAAGCCCGTCAAATACGACAAGCGACGCTACAGAC
GACGCAACCGCATAGAGATCATGTTCGGTAGGTTGAAGGACTGGCGGCGAGTAGCGACACGTTACGATAGATGCCCAAAGGTCTTCCTCTCCGCCGTCGC
TCTCGCTGCCACCGTCATGTTCTGGCTGTGACCATCAATGAGTCTGGAGCC
GAACAGATGGAGCGGCTGAAGCCGTTCTTCCCCAAGAGCCATGGTAAGCCGAGGGTCGATGACCGGCGCGTGCTGAGCGGCATAATCTTCATCAACCGCA
ATGGGTTGCGGTGGTGCGATGCGCCCCGGGAGTATGGCCCGCCCAAGACGCTCTACAACCGGTGGAAGCGCTGGAGCGAGATGGGCGTGTTTGCCAGGAT
CTTCGAGGGATTGGCCTCGGAGGCAACGGATCAGAAGACGCTGATGATTGATGCGACGTATCTGAAAGCCCATCGCACGGCGTCGAGCCTGCGGTCGAAA
AAGGGGGGCGTGGACGCCTGATTGGCAGGACTAAGGGCGGTATGAACACCAAGTTGCATGCCGTCACGGATGCCAGAGGCCGCCCACTCAAGTTTTTCAT
GACGGCCGGCCAAGTCAGCGATTACACCGGTGCAGCCGCGCTGCTGAGCAGCCTGCCTCGGGCGGACTGGCTGCTCGCCGACCGAGGCTATGATGCGGAT
TGGTTCCGCGACGCCCTGAAAGACAAGGGGATCAGGCCCTGCATCCCGGGCCGGAAGTCCCGCGGCAAGCCCGTCAAATACGACAAGCGACGCTACAGAC
GACGCAACCGCATAGAGATCATGTTCGGTAGGTTGAAGGACTGGCGGCGAGTAGCGACACGTTACGATAGATGCCCAAAGGTCTTCCTCTCCGCCGTCGC
TCTCGCTGCCACCGTCATGTTCTGGCTGTGACCATCAATGAGTCTGGAGCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
348 bp | 115 aa | 74 | 421 | + | No |
Description : First part of the transposase
ORF sequence :
MSNLFWLTDEQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPREYGPPKTLYNRWKRWSEMGVFARIFEGLASEATDQKTLMIDATYLKAH
RTASSLRSKKGGVDA
RTASSLRSKKGGVDA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
480 bp | 159 aa | 352 | 831 | + | No |
Description : Second part of the transposase
ORF sequence :
CDVSESPSHGVEPAVEKGGRGRLIGRTKGGMNTKLHAVTDARGRPLKFFMTAGQVSDYTGAAALLSSLPRADWLLADRGYDADWFRDALKDKGIRPCIPG
RKSRGKPVKYDKRRYRRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAVALAATVMFWL
RKSRGKPVKYDKRRYRRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAVALAATVMFWL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
758 bp | 252 aa | 74 | 831 | + | Yes |
Chemistry : DDE
ORF sequence :
MSNLFWLTDEQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPREYGPPKTLYNRWKRWSEMGVFARIFEGLASEATDQKTLMIDATYLKAH
RTASSLRSKKGGRGRLIGRTKGGMNTKLHAVTDARGRPLKFFMTAGQVSDYTGAAALLSSLPRADWLLADRGYDADWFRDALKDKGIRPCIPGRKSRGKP
VKYDKRRYRRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAVALAATVMFWL
RTASSLRSKKGGRGRLIGRTKGGMNTKLHAVTDARGRPLKFFMTAGQVSDYTGAAALLSSLPRADWLLADRGYDADWFRDALKDKGIRPCIPGRKSRGKP
VKYDKRRYRRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAVALAATVMFWL
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277