ISPaes2
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826198 | Y | Paracoccus aestuarii | Paracoccus aestuarii DSM 19484 |
DNA section
IS Length : 841 bp
Ends
IR Length : 18/21
IRL : GGCTCCAGACCCATTGATCTTACGGTCTTTGCATGATTCATGCTCCTCAA
IRR : GGCTCCAGACTCATTAAGTTTCACAGCCAGAACAAGACGGTTGCGGCGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCATTACGTC | TA | ACGATATTTA | 2 |
DNA sequence
GGCTCCAGACCCATTGATCTTACGGTCTTTGCATGATTCATGCTCCTCAAGGAGACCTGATCGATGAGTAATCTTTACTGGCTGAGCGACGCCCAAATGG
AGCGTCTGAAACCGTTCTTTCCCAAGAGCCATGGCAAGCCCCGGGTCGATGATCGTCGCGTCCTCAGCGGCATAATTTTCATCAATCGTAATGGGTTGCG
GTGGTGTGACGCGCCGAAGGAATACGGCCCGGCCAAAACCCTCTACAACCGCTGGAAGCGCTGGAGCGATAACGGGGTTTTTGCCCGGATCATTGTCGGC
CTTGCCGCCGAGAGCGCCGAGCACAAGACGATCATGATTGACGCGACCTATCTCAAGGCACACCGCACGGCCTCGAGCCTTGGGGTGAAAAAGGGGGGCG
CGGGCGCCAGATCGGGCGCACCAAAGGCGGTATGAACACCAAGTTGCACGCTGTCGCCGATGCGAAGGGGCGGCCGATCGGGTTCTTCATGTCGGCCGGC
CAGGTTAGCGATTACACCGGCGCGGCGGCGCTGCTGGGCAGCCTGCCGAAGGCTGAGTGGCTTCTGGCCGACAGGGGCTACGACGCTGATTGGTTCAGAG
ACGCTTTGAAAGACAAGGGGATAAAGGTTTGCATCCCCGGACGGAGGTCCCGCAAGAAGGTCGTCAAATACGACAAGCGGCGTTACAAAAGGCGTAACCG
CATCGAAATCATGTTCGGACGTCTGAAGGACTGGAGGCGCGTCGCAACCCGTTATGACCGCTGCCCGGAAACGTTCTTCTCAGCGATCATGCTCGCCGCA
ACCGTCTTGTTCTGGCTGTGAAACTTAATGAGTCTGGAGCC
AGCGTCTGAAACCGTTCTTTCCCAAGAGCCATGGCAAGCCCCGGGTCGATGATCGTCGCGTCCTCAGCGGCATAATTTTCATCAATCGTAATGGGTTGCG
GTGGTGTGACGCGCCGAAGGAATACGGCCCGGCCAAAACCCTCTACAACCGCTGGAAGCGCTGGAGCGATAACGGGGTTTTTGCCCGGATCATTGTCGGC
CTTGCCGCCGAGAGCGCCGAGCACAAGACGATCATGATTGACGCGACCTATCTCAAGGCACACCGCACGGCCTCGAGCCTTGGGGTGAAAAAGGGGGGCG
CGGGCGCCAGATCGGGCGCACCAAAGGCGGTATGAACACCAAGTTGCACGCTGTCGCCGATGCGAAGGGGCGGCCGATCGGGTTCTTCATGTCGGCCGGC
CAGGTTAGCGATTACACCGGCGCGGCGGCGCTGCTGGGCAGCCTGCCGAAGGCTGAGTGGCTTCTGGCCGACAGGGGCTACGACGCTGATTGGTTCAGAG
ACGCTTTGAAAGACAAGGGGATAAAGGTTTGCATCCCCGGACGGAGGTCCCGCAAGAAGGTCGTCAAATACGACAAGCGGCGTTACAAAAGGCGTAACCG
CATCGAAATCATGTTCGGACGTCTGAAGGACTGGAGGCGCGTCGCAACCCGTTATGACCGCTGCCCGGAAACGTTCTTCTCAGCGATCATGCTCGCCGCA
ACCGTCTTGTTCTGGCTGTGAAACTTAATGAGTCTGGAGCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
372 bp | 123 aa | 64 | 435 | + | No |
Description : First part of the transposase
ORF sequence :
MSNLYWLSDAQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPAKTLYNRWKRWSDNGVFARIIVGLAAESAEHKTIMIDATYLKAH
RTASSLGVKKGGAGARSGAPKAV
RTASSLGVKKGGAGARSGAPKAV
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
480 bp | 159 aa | 342 | 821 | + | No |
Description : Second part of the transposase
ORF sequence :
RDLSQGTPHGLEPWGEKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVSDYTGAAALLGSLPKAEWLLADRGYDADWFRDALKDKGIKVCIPG
RRSRKKVVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPETFFSAIMLAATVLFWL
RRSRKKVVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPETFFSAIMLAATVLFWL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
758 bp | 252 aa | 64 | 821 | + | Yes |
Chemistry : DDE
ORF sequence :
MSNLYWLSDAQMERLKPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPAKTLYNRWKRWSDNGVFARIIVGLAAESAEHKTIMIDATYLKAH
RTASSLGVKKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVSDYTGAAALLGSLPKAEWLLADRGYDADWFRDALKDKGIKVCIPGRRSRKKV
VKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPETFFSAIMLAATVLFWL
RTASSLGVKKGGRGRQIGRTKGGMNTKLHAVADAKGRPIGFFMSAGQVSDYTGAAALLGSLPKAEWLLADRGYDADWFRDALKDKGIKVCIPGRRSRKKV
VKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPETFFSAIMLAATVLFWL
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277