ISPaes1
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826197 | Y | Paracoccus aestuarii | Paracoccus aestuarii DSM 19484 |
DNA section
IS Length : 851 bp
Ends
IR Length : 16/18
IRL : GGTCGTGTTGACAAAAGGGATTCCTCTGGCAGTCGTCGTATGATTCAAGC
IRR : GGTCATGTTGACAAATGGCGGAGCCAGAGCCTGATGCAGGCGACGTCGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCACTGAC | TA | GCGATAACTT | 2 |
DNA sequence
GGTCGTGTTGACAAAAGGGATTCCTCTGGCAGTCGTCGTATGATTCAAGCTCATCTCTACGTGGGAGATGAACTTGGCACGCAACCTGATATCCGACGAT
GAGTGGACCTTCTTCGAAGGCTTCATTCGTGCCGTCCGGCACGCTAACGGGCGGAAACCCGCGAACCATCGTCTTGTTCTCGATGGAATTTTCTGGATCG
CAAGGACTGGTGCGCCATGGCGTGATCTGCCCGAAGAGTTTGGCAAGTGGTCCTCGGTCTACCGTCAGTTCCGCCGCTGGACTTTGGCGGGACTGTGGGA
GGATATCCTGGATGCGCTGAACCACGCTGAGATCGCGCCAGACAAGCTCCAGATGGTTGATAGCACTGTGATCCGCGCGCACCATCATGCGGCGGGCGCA
AAAGGGGGACTCCGAAAGAGGCTCTTGGCCGTTCGAGAGGTGGGTTCTCGACCAAGATCCATCTCAGGGTCAACGGCGCAGGCCTCCCGATGAGGACCGA
GATCACGCCGGGGCAAGAGTCCGATTACACCGGCTACGATCTGGTGATGGCCGACAATCTTCCACAGCCCGCCGTTCTGGTCGCCGACAGGGGCTATGAC
TCTGATAAAATTCGGGAAGACATCGAGAGCCGCAACGCCCTGCCCATGATACCGATGCGAAAGAACCGAAGGGTGCGCAAGGCTGTCGACATGACCATCT
ATACCCTGCGCAACATGGTCGAGCGCTGCTTCAACAAGCTGAAAAACAGCCGCCGCCTGGCAACCCGCTACGACAAAACCGCCGAAAGCTTCCTCGGCTT
CGTCGACGTCGCCTGCATCAGGCTCTGGCTCCGCCATTTGTCAACATGACC
GAGTGGACCTTCTTCGAAGGCTTCATTCGTGCCGTCCGGCACGCTAACGGGCGGAAACCCGCGAACCATCGTCTTGTTCTCGATGGAATTTTCTGGATCG
CAAGGACTGGTGCGCCATGGCGTGATCTGCCCGAAGAGTTTGGCAAGTGGTCCTCGGTCTACCGTCAGTTCCGCCGCTGGACTTTGGCGGGACTGTGGGA
GGATATCCTGGATGCGCTGAACCACGCTGAGATCGCGCCAGACAAGCTCCAGATGGTTGATAGCACTGTGATCCGCGCGCACCATCATGCGGCGGGCGCA
AAAGGGGGACTCCGAAAGAGGCTCTTGGCCGTTCGAGAGGTGGGTTCTCGACCAAGATCCATCTCAGGGTCAACGGCGCAGGCCTCCCGATGAGGACCGA
GATCACGCCGGGGCAAGAGTCCGATTACACCGGCTACGATCTGGTGATGGCCGACAATCTTCCACAGCCCGCCGTTCTGGTCGCCGACAGGGGCTATGAC
TCTGATAAAATTCGGGAAGACATCGAGAGCCGCAACGCCCTGCCCATGATACCGATGCGAAAGAACCGAAGGGTGCGCAAGGCTGTCGACATGACCATCT
ATACCCTGCGCAACATGGTCGAGCGCTGCTTCAACAAGCTGAAAAACAGCCGCCGCCTGGCAACCCGCTACGACAAAACCGCCGAAAGCTTCCTCGGCTT
CGTCGACGTCGCCTGCATCAGGCTCTGGCTCCGCCATTTGTCAACATGACC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
426 bp | 141 aa | 68 | 493 | + | No |
Description : First part of the transposase
ORF sequence :
MNLARNLISDDEWTFFEGFIRAVRHANGRKPANHRLVLDGIFWIARTGAPWRDLPEEFGKWSSVYRQFRRWTLAGLWEDILDALNHAEIAPDKLQMVDST
VIRAHHHAAGAKGGLRKRLLAVREVGSRPRSISGSTAQASR
VIRAHHHAAGAKGGLRKRLLAVREVGSRPRSISGSTAQASR
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
486 bp | 161 aa | 364 | 849 | + | No |
Description : Second part of the transposase
ORF sequence :
HCDPRAPSCGGRKRGTPKEALGRSRGGFSTKIHLRVNGAGLPMRTEITPGQESDYTGYDLVMADNLPQPAVLVADRGYDSDKIREDIESRNALPMIPMRK
NRRVRKAVDMTIYTLRNMVERCFNKLKNSRRLATRYDKTAESFLGFVDVACIRLWLRHLST
NRRVRKAVDMTIYTLRNMVERCFNKLKNSRRLATRYDKTAESFLGFVDVACIRLWLRHLST
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
782 bp | 260 aa | 68 | 849 | + | Yes |
Chemistry : DDE
ORF sequence :
MNLARNLISDDEWTFFEGFIRAVRHANGRKPANHRLVLDGIFWIARTGAPWRDLPEEFGKWSSVYRQFRRWTLAGLWEDILDALNHAEIAPDKLQMVDST
VIRAHHHAAGAKGGTPKEALGRSRGGFSTKIHLRVNGAGLPMRTEITPGQESDYTGYDLVMADNLPQPAVLVADRGYDSDKIREDIESRNALPMIPMRKN
RRVRKAVDMTIYTLRNMVERCFNKLKNSRRLATRYDKTAESFLGFVDVACIRLWLRHLST
VIRAHHHAAGAKGGTPKEALGRSRGGFSTKIHLRVNGAGLPMRTEITPGQESDYTGYDLVMADNLPQPAVLVADRGYDSDKIREDIESRNALPMIPMRKN
RRVRKAVDMTIYTLRNMVERCFNKLKNSRRLATRYDKTAESFLGFVDVACIRLWLRHLST
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277