ISPmar3
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826203 | Y | Paracoccus marcusii | Paracoccus marcusii OS22 |
DNA section
IS Length : 1282 bp
Ends
IR Length : 14/18
IRL : GGGCACCTCGAAAAATTGCCTGCCCCGTGTTGCTGCGGTATAAATGAGGG
IRR : GGGCACCTCGATTTTTTGAGTTTTAGGCTCCGGGTAGGGGACTGGGCGGC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCCTTTATC | TTCT | ACGTAGGAGG | 4 |
DNA sequence
GGGCACCTCGAAAAATTGCCTGCCCCGTGTTGCTGCGGTATAAATGAGGGGGATCGGCGGCTTGGAGTTTGACGATGGCGCAGTTGGGTTTCTTTGATCT
TTCGGATCGCTACGCGAGCCTGGACGCCAAGAGGGACCCACTGGTCGAGATCGACGCCGTCGTGCCGTGGGAGGAGTTCCGTCCGACGCTGGAGCGCGTT
TGGCGCAAGCCGGATGCAGAGCGCAAGTCACGTGCCGGTCGCAAGCCCATGGATGCCGTGCTGATGTTCAAGACACTGGTGCTGGGTGCGCTTTACAACC
TGTCCGACGACCAGATCGAGTATCAGGTGCGCGACCGTTTGTCGTTCATGCGGTTTCTGGGCCTCGGGCTCGAGGACCGGGTGCCCGATGCCAAGACGGT
CTGGCTTTATCGCGAGGCGTTGGCGCAGGCGGGCCTGGTGGAAGGGCTGTTCAAGCAGTTCGACGGCTATCTGGCGCGTCAGGGTTACATTGCGCGGGGC
GGGCAGATCCTCGATGCCTCCATCGTCCCGGTGCCGCGCAACCGCAACACCCGTGATGAAAACAAGGCGATTAAGAACGGCGAGATGCCCGAAGACTGGG
CCGACAAGCCCGCCAAGCGGTCACAGAAGGACGTGGATGCGCGCTGGACCAAGAAGCACGGGAAATCCCACTACGGCTACAAAAACCATGTGAACATGGA
CAAGAAGCACAAGCTGGTGCGGCGTTACCATGTCAGCGATGCTGCCCTGCACGACAGCCAGGCAGTGGATCACCTGCTGACGCGGGGCAATACCGGCGCA
GGGGTCTGGGCAGACCCTGCCTATCGCTCCGAGGAGATGGAAACCAAGCTGCGCAGCATGAAGCTGAAGAGCCACATCCACCGCAAGGGCAAGCGCGGCA
AGCCGCTGACCGAACAGGCCAAGGGCAGCAACCGGACCAAATCGTCGGTGCGCGCGCGGGTCGAGCATATCTTCGGCGCGCAGACCAACGACATGGGCGG
TACGCTGGTGCGCACGATCGGCATGGTTCGGGCGAAGGCCAAGATCGGGATGAAGAACCTGGCCTACAACATGCGCCGCCTCGGCCAGCTGCGCCGCCTG
AACCCGTGCCCGACCTGACCCCGGGGCACGGTAATCAGGCCAGGAGGCACGAAACGCCGCGCGTGACAGGCGTAGCACCGAAGACCACCTAAAGCGCCAG
GCCGCCGACGGGCGGTATCATCCCTGTCTCAAGCCGCCCAGTCCCCTACCCGGAGCCTAAAACTCAAAAAATCGAGGTGCCC
TTCGGATCGCTACGCGAGCCTGGACGCCAAGAGGGACCCACTGGTCGAGATCGACGCCGTCGTGCCGTGGGAGGAGTTCCGTCCGACGCTGGAGCGCGTT
TGGCGCAAGCCGGATGCAGAGCGCAAGTCACGTGCCGGTCGCAAGCCCATGGATGCCGTGCTGATGTTCAAGACACTGGTGCTGGGTGCGCTTTACAACC
TGTCCGACGACCAGATCGAGTATCAGGTGCGCGACCGTTTGTCGTTCATGCGGTTTCTGGGCCTCGGGCTCGAGGACCGGGTGCCCGATGCCAAGACGGT
CTGGCTTTATCGCGAGGCGTTGGCGCAGGCGGGCCTGGTGGAAGGGCTGTTCAAGCAGTTCGACGGCTATCTGGCGCGTCAGGGTTACATTGCGCGGGGC
GGGCAGATCCTCGATGCCTCCATCGTCCCGGTGCCGCGCAACCGCAACACCCGTGATGAAAACAAGGCGATTAAGAACGGCGAGATGCCCGAAGACTGGG
CCGACAAGCCCGCCAAGCGGTCACAGAAGGACGTGGATGCGCGCTGGACCAAGAAGCACGGGAAATCCCACTACGGCTACAAAAACCATGTGAACATGGA
CAAGAAGCACAAGCTGGTGCGGCGTTACCATGTCAGCGATGCTGCCCTGCACGACAGCCAGGCAGTGGATCACCTGCTGACGCGGGGCAATACCGGCGCA
GGGGTCTGGGCAGACCCTGCCTATCGCTCCGAGGAGATGGAAACCAAGCTGCGCAGCATGAAGCTGAAGAGCCACATCCACCGCAAGGGCAAGCGCGGCA
AGCCGCTGACCGAACAGGCCAAGGGCAGCAACCGGACCAAATCGTCGGTGCGCGCGCGGGTCGAGCATATCTTCGGCGCGCAGACCAACGACATGGGCGG
TACGCTGGTGCGCACGATCGGCATGGTTCGGGCGAAGGCCAAGATCGGGATGAAGAACCTGGCCTACAACATGCGCCGCCTCGGCCAGCTGCGCCGCCTG
AACCCGTGCCCGACCTGACCCCGGGGCACGGTAATCAGGCCAGGAGGCACGAAACGCCGCGCGTGACAGGCGTAGCACCGAAGACCACCTAAAGCGCCAG
GCCGCCGACGGGCGGTATCATCCCTGTCTCAAGCCGCCCAGTCCCCTACCCGGAGCCTAAAACTCAAAAAATCGAGGTGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1044 bp | 347 aa | 75 | 1118 | + | No |
Chemistry : DDE
ORF sequence :
MAQLGFFDLSDRYASLDAKRDPLVEIDAVVPWEEFRPTLERVWRKPDAERKSRAGRKPMDAVLMFKTLVLGALYNLSDDQIEYQVRDRLSFMRFLGLGLE
DRVPDAKTVWLYREALAQAGLVEGLFKQFDGYLARQGYIARGGQILDASIVPVPRNRNTRDENKAIKNGEMPEDWADKPAKRSQKDVDARWTKKHGKSHY
GYKNHVNMDKKHKLVRRYHVSDAALHDSQAVDHLLTRGNTGAGVWADPAYRSEEMETKLRSMKLKSHIHRKGKRGKPLTEQAKGSNRTKSSVRARVEHIF
GAQTNDMGGTLVRTIGMVRAKAKIGMKNLAYNMRRLGQLRRLNPCPT
DRVPDAKTVWLYREALAQAGLVEGLFKQFDGYLARQGYIARGGQILDASIVPVPRNRNTRDENKAIKNGEMPEDWADKPAKRSQKDVDARWTKKHGKSHY
GYKNHVNMDKKHKLVRRYHVSDAALHDSQAVDHLLTRGNTGAGVWADPAYRSEEMETKLRSMKLKSHIHRKGKRGKPLTEQAKGSNRTKSSVRARVEHIF
GAQTNDMGGTLVRTIGMVRAKAKIGMKNLAYNMRRLGQLRRLNPCPT
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277