ISPaes3
- Family IS256
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU826199 | Y | Paracoccus aestuarii | Paracoccus aestuarii DSM 19484 |
DNA section
IS Length : 1393 bp
Ends
IR Length : 39
IRL : GGTCGTGTCGGGGAGTTGGTGGAAATTTGAGGGCGGCGTAATCTCCGGGT
IRR : GGTCGTGTCGCGAATGCTGTGGAAACTCCCTGGCAGCGTGCTCCGAGCAT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TGATCCGGAT | GGGCAGTG | ATAGAGAAAA | 8 |
DNA sequence
GGTCGTGTCGGGGAGTTGGTGGAAATTTGAGGGCGGCGTAATCTCCGGGTGAACTGACACCCACCCAACCGGCGGCGGCAACCGCCAGGGAGATCACGCC
ATGAACCAGATTACCGACACCGCGAGCTTTGCGCTACTGGCCGGAGAGGCCGGTTTCGATCCGATCGAGGAGCGGCTGCGGAGCCACGTCCGCGCGACCA
TCGAAGCCGTTTTCGAAGAAGAACTCGCGAGCTTTCTCGGCCGCCTTCGTTACGACCGGAGCGGCGGCTCGGCGAAAGGGTATCGCCACGGGCACCGGGA
GCGGCAACTCACTGGCACCTTCGGTACCGAGACAGTGCGGGTGCCGCGCGCCCGGATTGAGGATGATGCTGGCAAGGTGACGGAGTGGCGCTCGAAGGCG
CTGCCCCGTTACCAGCGGCTGACGAAGAAGGCCGAGGCCCTGATCGCGGCAGTCTACCTCTCCGGAACCAACACGCGCCGGGTCAAGCGGGCGCTGTTCG
GGCTTTTCGAGGGCGCGGTCAGCAAGGACGTGGTCAGCCGCGCCTGGCGCAAGGTCAAGGTGGACTGGGACGCCTGGTGTGCGCGCAGTCTGGCCGATGA
AGACATTGTCCGCCTGATCCTCGACGGCACCGTGATCAAGACCCGACTGGACCGGAAAGCCACGAACATTTCTGTTCTGGCCGCCATCGGTGTGCGCCGC
GACGGACAGAAGGTGCTGTTATCCATCAGGAACATGGGTGGCGAGAGCACGGCCGCCTGGCGTCAGTTCCTGGATGACCTTGATGCCCGCGGTTTGAAGT
GGCCTGAATTCGTGATCGTTGACGGTGCCCCGGGGTTGGAGGCCGCGCTCGTGGCGCTGTGGGGCGAGGACCTGCCGATCCAGCGCTGCACGGTTCACAA
GCACCGCAACCTCCTGGCCCACGCGCCGAAGCACCTCCAAGACGAGTTGACCGAGGACTACCGCGACATGATTTACGCCGACACCGCCGCCGGGATTGAG
ACGCGCCGCAAGGCCTTCCTCCGCAAATGGCGCCTGAAGTGCCGAGCGGTGGCCGACAGCCTGGAGGAAGCAGGCGACCGGCTCTTCACCTTCACACGGC
TCGACCCCTCGCAATGGAAATCGGCCCGGACCACCAACGCCATCGAGCGCCTGAACGGGGAGTTCCGCCGCCGCATCAAGACCCAGACCGTGCTGCCCTC
CGCAGAGACCGTGCCCATGCTGCTCTGGGCGCTGCTCGCCTCCGGCCAGATCCAGATGCGCAAGGTCGATGGCTGGGAAACCCTCTCTCAGCCCCTCGAG
CCCATGCCCCTTGACCTCGCCGCCTAACAGGCCGAAGCTTCACATGCTCGGAGCACGCTGCCAGGGAGTTTCCACAGCATTCGCGACACGACC
ATGAACCAGATTACCGACACCGCGAGCTTTGCGCTACTGGCCGGAGAGGCCGGTTTCGATCCGATCGAGGAGCGGCTGCGGAGCCACGTCCGCGCGACCA
TCGAAGCCGTTTTCGAAGAAGAACTCGCGAGCTTTCTCGGCCGCCTTCGTTACGACCGGAGCGGCGGCTCGGCGAAAGGGTATCGCCACGGGCACCGGGA
GCGGCAACTCACTGGCACCTTCGGTACCGAGACAGTGCGGGTGCCGCGCGCCCGGATTGAGGATGATGCTGGCAAGGTGACGGAGTGGCGCTCGAAGGCG
CTGCCCCGTTACCAGCGGCTGACGAAGAAGGCCGAGGCCCTGATCGCGGCAGTCTACCTCTCCGGAACCAACACGCGCCGGGTCAAGCGGGCGCTGTTCG
GGCTTTTCGAGGGCGCGGTCAGCAAGGACGTGGTCAGCCGCGCCTGGCGCAAGGTCAAGGTGGACTGGGACGCCTGGTGTGCGCGCAGTCTGGCCGATGA
AGACATTGTCCGCCTGATCCTCGACGGCACCGTGATCAAGACCCGACTGGACCGGAAAGCCACGAACATTTCTGTTCTGGCCGCCATCGGTGTGCGCCGC
GACGGACAGAAGGTGCTGTTATCCATCAGGAACATGGGTGGCGAGAGCACGGCCGCCTGGCGTCAGTTCCTGGATGACCTTGATGCCCGCGGTTTGAAGT
GGCCTGAATTCGTGATCGTTGACGGTGCCCCGGGGTTGGAGGCCGCGCTCGTGGCGCTGTGGGGCGAGGACCTGCCGATCCAGCGCTGCACGGTTCACAA
GCACCGCAACCTCCTGGCCCACGCGCCGAAGCACCTCCAAGACGAGTTGACCGAGGACTACCGCGACATGATTTACGCCGACACCGCCGCCGGGATTGAG
ACGCGCCGCAAGGCCTTCCTCCGCAAATGGCGCCTGAAGTGCCGAGCGGTGGCCGACAGCCTGGAGGAAGCAGGCGACCGGCTCTTCACCTTCACACGGC
TCGACCCCTCGCAATGGAAATCGGCCCGGACCACCAACGCCATCGAGCGCCTGAACGGGGAGTTCCGCCGCCGCATCAAGACCCAGACCGTGCTGCCCTC
CGCAGAGACCGTGCCCATGCTGCTCTGGGCGCTGCTCGCCTCCGGCCAGATCCAGATGCGCAAGGTCGATGGCTGGGAAACCCTCTCTCAGCCCCTCGAG
CCCATGCCCCTTGACCTCGCCGCCTAACAGGCCGAAGCTTCACATGCTCGGAGCACGCTGCCAGGGAGTTTCCACAGCATTCGCGACACGACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1227 bp | 408 aa | 101 | 1327 | + | No |
Chemistry : DDE
ORF sequence :
MNQITDTASFALLAGEAGFDPIEERLRSHVRATIEAVFEEELASFLGRLRYDRSGGSAKGYRHGHRERQLTGTFGTETVRVPRARIEDDAGKVTEWRSKA
LPRYQRLTKKAEALIAAVYLSGTNTRRVKRALFGLFEGAVSKDVVSRAWRKVKVDWDAWCARSLADEDIVRLILDGTVIKTRLDRKATNISVLAAIGVRR
DGQKVLLSIRNMGGESTAAWRQFLDDLDARGLKWPEFVIVDGAPGLEAALVALWGEDLPIQRCTVHKHRNLLAHAPKHLQDELTEDYRDMIYADTAAGIE
TRRKAFLRKWRLKCRAVADSLEEAGDRLFTFTRLDPSQWKSARTTNAIERLNGEFRRRIKTQTVLPSAETVPMLLWALLASGQIQMRKVDGWETLSQPLE
PMPLDLAA
LPRYQRLTKKAEALIAAVYLSGTNTRRVKRALFGLFEGAVSKDVVSRAWRKVKVDWDAWCARSLADEDIVRLILDGTVIKTRLDRKATNISVLAAIGVRR
DGQKVLLSIRNMGGESTAAWRQFLDDLDARGLKWPEFVIVDGAPGLEAALVALWGEDLPIQRCTVHKHRNLLAHAPKHLQDELTEDYRDMIYADTAAGIE
TRRKAFLRKWRLKCRAVADSLEEAGDRLFTFTRLDPSQWKSARTTNAIERLNGEFRRRIKTQTVLPSAETVPMLLWALLASGQIQMRKVDGWETLSQPLE
PMPLDLAA
Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277