ISPaes3

  • Family IS256
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GU826199 Y Paracoccus aestuarii
Paracoccus aestuarii DSM 19484
DNA section
IS Length : 1393 bp

Ends


IR Length : 39

IRL : GGTCGTGTCGGGGAGTTGGTGGAAATTTGAGGGCGGCGTAATCTCCGGGT
IRR : GGTCGTGTCGCGAATGCTGTGGAAACTCCCTGGCAGCGTGCTCCGAGCAT

Insertion site


Left flankDirect repeatRight flankDR Length
TGATCCGGATGGGCAGTGATAGAGAAAA8

DNA sequence

GGTCGTGTCGGGGAGTTGGTGGAAATTTGAGGGCGGCGTAATCTCCGGGTGAACTGACACCCACCCAACCGGCGGCGGCAACCGCCAGGGAGATCACGCC
ATGAACCAGATTACCGACACCGCGAGCTTTGCGCTACTGGCCGGAGAGGCCGGTTTCGATCCGATCGAGGAGCGGCTGCGGAGCCACGTCCGCGCGACCA
TCGAAGCCGTTTTCGAAGAAGAACTCGCGAGCTTTCTCGGCCGCCTTCGTTACGACCGGAGCGGCGGCTCGGCGAAAGGGTATCGCCACGGGCACCGGGA
GCGGCAACTCACTGGCACCTTCGGTACCGAGACAGTGCGGGTGCCGCGCGCCCGGATTGAGGATGATGCTGGCAAGGTGACGGAGTGGCGCTCGAAGGCG
CTGCCCCGTTACCAGCGGCTGACGAAGAAGGCCGAGGCCCTGATCGCGGCAGTCTACCTCTCCGGAACCAACACGCGCCGGGTCAAGCGGGCGCTGTTCG
GGCTTTTCGAGGGCGCGGTCAGCAAGGACGTGGTCAGCCGCGCCTGGCGCAAGGTCAAGGTGGACTGGGACGCCTGGTGTGCGCGCAGTCTGGCCGATGA
AGACATTGTCCGCCTGATCCTCGACGGCACCGTGATCAAGACCCGACTGGACCGGAAAGCCACGAACATTTCTGTTCTGGCCGCCATCGGTGTGCGCCGC
GACGGACAGAAGGTGCTGTTATCCATCAGGAACATGGGTGGCGAGAGCACGGCCGCCTGGCGTCAGTTCCTGGATGACCTTGATGCCCGCGGTTTGAAGT
GGCCTGAATTCGTGATCGTTGACGGTGCCCCGGGGTTGGAGGCCGCGCTCGTGGCGCTGTGGGGCGAGGACCTGCCGATCCAGCGCTGCACGGTTCACAA
GCACCGCAACCTCCTGGCCCACGCGCCGAAGCACCTCCAAGACGAGTTGACCGAGGACTACCGCGACATGATTTACGCCGACACCGCCGCCGGGATTGAG
ACGCGCCGCAAGGCCTTCCTCCGCAAATGGCGCCTGAAGTGCCGAGCGGTGGCCGACAGCCTGGAGGAAGCAGGCGACCGGCTCTTCACCTTCACACGGC
TCGACCCCTCGCAATGGAAATCGGCCCGGACCACCAACGCCATCGAGCGCCTGAACGGGGAGTTCCGCCGCCGCATCAAGACCCAGACCGTGCTGCCCTC
CGCAGAGACCGTGCCCATGCTGCTCTGGGCGCTGCTCGCCTCCGGCCAGATCCAGATGCGCAAGGTCGATGGCTGGGAAACCCTCTCTCAGCCCCTCGAG
CCCATGCCCCTTGACCTCGCCGCCTAACAGGCCGAAGCTTCACATGCTCGGAGCACGCTGCCAGGGAGTTTCCACAGCATTCGCGACACGACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1227 bp408 aa1011327+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MNQITDTASFALLAGEAGFDPIEERLRSHVRATIEAVFEEELASFLGRLRYDRSGGSAKGYRHGHRERQLTGTFGTETVRVPRARIEDDAGKVTEWRSKA
LPRYQRLTKKAEALIAAVYLSGTNTRRVKRALFGLFEGAVSKDVVSRAWRKVKVDWDAWCARSLADEDIVRLILDGTVIKTRLDRKATNISVLAAIGVRR
DGQKVLLSIRNMGGESTAAWRQFLDDLDARGLKWPEFVIVDGAPGLEAALVALWGEDLPIQRCTVHKHRNLLAHAPKHLQDELTEDYRDMIYADTAAGIE
TRRKAFLRKWRLKCRAVADSLEEAGDRLFTFTRLDPSQWKSARTTNAIERLNGEFRRRIKTQTVLPSAETVPMLLWALLASGQIQMRKVDGWETLSQPLE
PMPLDLAA

 

Blast result :
Comments
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277