ISShes11
- Family Tn3
- Group
Isoform Synonym(s) TnShes11
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_008573 | ND | Shewanella sp. | Shewanella sp. ANA-3 |
DNA section
IS Length : 7669 bp
Ends
IR Length : 39/40
IRL : GGGGTCGCCTCAGAAAACGGAAAATAAAGCACGCTAAGCCCTTACTTACC
IRR : GGGGTCGTCTCAGAAAACGGAAAATAAAGCACGCTAAGCCGGTTGCAGAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| TCTTCCACTT | TATCGGTATA | 0 |
DNA sequence
GGGGTCGCCTCAGAAAACGGAAAATAAAGCACGCTAAGCCCTTACTTACCCAGATGTTTGACTGTTCGTGGCACTTTCACCATGGCAATTGCAATTGCCC
AACCCTTGCAAAATGCCGCACGCCTCTACAGATCGAGAGCCAGAACACTTCTCGCGCAAATCAACCAAGTGCCGTTTTAACTGCAACAGCGCGGACACAC
GCATTTCCACCTGTTGAATATGGGCCTCCAGCAGCGTGTTGACCTCCCCACAGTCCTGCATCGGGTTGTCTCGCAGACCCAGCAATGCGCGAATCTCGCT
CAACGTCATCTCGAGCGAACGGCAATGACGGATGAATTGCAAGCGCTCAATGTGCGCCTCACCGTACAGCCGGAAGTTGCCACCGCTTCGCGCTGGCTTC
GGCAGTAGCCCTTCCTTCTCGTAGTAGCGGATGGTCACGACCTCGCACCCAGAGCGCTTGGCGAGGTCGCCAATTCTGATTTCCATGCATCAATCTCCAA
TTATCACTTGACTCTATAGTGACTATAGAGATTTTAATGGAGGCTGAATAGAAGATTTTCAGGAGTTACTCATGAGCGAATGCGCTTCAAAGGGGTGTGG
CTGCACGACTGAGCCGATCATCCAACCCACGGCACCGGCCCCGCTGGCAACCGGATCGGCTCAAGCGGTGTACCGCATCGAGAACATGGATTGCCCGACC
GAAGAGGCGCTGATCCGAAGCAAACTGGCCGGTCTGGCGGGGGTGGCAGGTCTTGAATTCAACCTGATGCAACGTACCTTGGCCGTGCGACACGAATTGC
CTTCGTTGTCTCCCGTCGAGCAGGCGCTGAAGGCCATCGGCATGCAAGCTGTGCGCATGGATCAGGCGTCGGCCGAGCAGACGACCAAGCTGTCCATTGC
CAAGATGGATTGCCCGACCGAAGAGACGTAGATCCGCAACAAGCTCGGCACCGTGGCCGGTGTTGCTGATCTCGATTTCAACCTGATGCAGCGCACGCTG
TCGGTACGCCATGCGAACCAGGTTCTGCCAGACGTGCTCGTGGCACTGCAAGCGCTTGGATTCGAGGCGCAGGTCGTGGACACGGCAGAGGTCGCATCTC
CATCCGCCGCCCCTGTGACCACGCCGACCAACTGGTGGCCGCTGGGCATCTCCTTGGTCACTGCATCGGCGGCCGAGGCGGTCTACTGGCTCCACAACGG
CAATCACTGGTCGGTTGTCGTTCTGGCGCTTGTCGCGGTCTTCACGGGTGGCCTCTCCACCTACAAGAAGGGGTGGATTGCGCTCAAGAACCGTAATCTC
AACATGAACGCCCTCATGTCGATTGCGGTCACGGGTGCCATGTTGATCGGCCACTGGCCCGAAGCGGCAATGGTGATGGTACTGTTCGCGCTGGCCGAGG
TAATCGAAGCCAAATCGCTGGATCGCGCTCGTAACGCTATCCGTGGCCTGCTCGACCTGACCCCGGAACAGGCCACGGTACAGCAGGCTGACGGCACATG
GCGCGAGGTGGGCGCCAAGCAAATCACCATCGGCGCCCGCGTCCGGGTCAAACCAGGTGAGCGCATCGCCCTTGATGGTGAGGTGCTGGAAGGCCGCTCT
GCCGTCAACCAAGCCCCGATCACGGGTGAAAGCCTCCCGGTCGAAAAATCCCCCGGTGATTCGGTGTTCGCTGGCACGATCAACGAATCCGGCTCGTTCG
AGTACCGCGTCACCGCCTTGGCCAACAACTCCACTTTGGCCCGGATCATTCACGCGGTAGAGGCTGCGCAAGGTAGTCGTGCGCCGACTCAGCGTTTTGT
CGATCAGTTCGCCCGCTGGTACACCCCCGTTGTATTCGGCGTTGCCATCGCCGTCGCGTTGTTGCCGCCGCTGTTCATGGGTGCGGCATGGCTCGACTGG
ATCTACCGTGCATTGGTTCTGCTGGTGGTCGCCTGCCCGTGCGCACTGGTGATCTCTACACCGGTCAGCATCGTCAGCGGCCTGGCCGCCGCCGCCCGCC
ACGGCATTCTCATCAAAGGTGGCGTCTATCTGGAAGAAGGCCGCAAGCTGCGCTGGCTGGCTCTGGACAAGACCGGCACGATCACGCACGGCAAGCCCGC
ACAGACCGACTTTGTCACATGGGGCAATGCACTCGCCTCGGACAGCCGCAGCATCGCTGCCAGTCTGGCGGCCCGCTCGGACCATCCTGTATCCAAGGCG
GTGGCACAGGCCGCGCAGACGGACGGGGTTGCCTTGCTCGACGTGGCCGAATTCAACGCGCTGCCCGGTCGGGGTGTGCAGGGCCAAATCAACGGTGAAA
CCTACCATCTTGGCAACCAGCGGATGCTAGAAGAGCTGGGGCAGCGTACTCCCGAGCTGGAACAGCGCATCGCGGCGCTGGAAACCATGGGTAAAACTGT
CGTGATGTTGGTCAGCGCAAAAGGGGTTCATGCCTTATTTGCCGTAGCGGACACCATCAAGGAAAGCAGCAGGAGCGCCATTGCCGAGCTTCATGCACTG
GGCATCAACACCATGATGCTGACCGGCGACAACCCCCACACGGCACAGGCCATTGCCGCACAAGCCGGGATCGACCGTGCGCAAGGCAATCTGCTCCCAG
ACGACAAACTGCGCGAAGTTGAGCTACTGGCCATAAAGGGCAAGGTCGGCATGGTCGGTGATGGCATCAACGATGCCCCGGCCTTGGCGCGTGCGGACAT
CGGCTTTGCCATGGGAGCGGCTGGCACAGATACCGCCATCGAGACCGCTGACGTGGCCCTGATGGACGACAACCTGGGCAAGATTCCGACCTTCGTGCGC
CTGTCGCGTGCGACGGCGCAGGTGCTGATGCAAAACATTGTGCTGGCCCTTGGCATCAAGGCAGTATTTCTGGTGCTGACCTTCACGGGTCAAGCGACCA
TGTGGATGGCGGTGTTTGCTGATATGGGGGCCAGCTTGCTCGTCGTTGGCAATGGCTTGAGGCTGTTGCGCAAATGAGCTGGAAATTCTTTCTCTACGAC
TGGGGTGGTCTGAACATCGCGTTGTTCCAAGCCATCAACATGAGCACACCTGCAGCGCTGGAACCGCTGGCATCGTTCTTCAACCTTGTGATAGGCAACT
ACTGGACTGCACCACTGATGCTCTTGGCGATGTGGGGATGGTCAAAGTCGGCACCTGACCCAACGCGGGCCGATGCCATCCGGTACAGACTCAGAGTCTT
TAGCGTGGCCTTTGCGTTGGCATTTCTCGTCGCCACCATCTTGAAGCTATGGATCGACTTTCCACGCCCGCCTGCCGTTTTTGGCGACATGGTGCGCGTT
ATCGGGGGCATCGAACGACACTACAGCCTGCCCAGCGGGCATGCCACCTATGCCGCGCTGGTGGTCGGCGCGCTCTGGCCTTTGATAGGCCGTCGTGGCC
GCATCGGCTTGGTGTTGTACGCCGCATTGGTCGGTTGGTCACGCATCGCAGCCGGAATGCACTTTCCTGCCGATGTGCTGGCGGGGTGGGTACTTGGATT
GAGTTGCACGGCGCTCGCCGGGTGGCTGATGCCGCTGGCCGCCCCTGTGTGGCAATCGGCTCGCCGCACATCGACTTGGGTCTGGTTCGCAGTGGCCGCC
AGTGCTGTCATGACCGATCAGCTCGCAAAGTTCGCCATCACCCGCACGTTTGCCTACGGTGAACAGGTCGAAGTCACGCCCTTCTTCAACTTCGTCCATG
TCCTGAATCCCGGCGCGGCATTCAGCTTTCTGGCGAACGCTGGCGGCTGGCAACGTTACTTTTTCATCACGCTGGGCCTGGTCGTTTCTGCTTGGCTGGG
ACGCATGCTGTGCCAGCAATTGCCCCGTCTCGAAGCGATGGGATACAGCCTGATCCTCGGCGGTGCGCTGGGCAATGTCGCGGATCGTGTGCTGCGTGGA
CAGGTTGTTGATTTCCTTGACTTCCATTGGCGACTTGCGCACTGGCCCGCCTTCAACCTCGCTGATGTGGCGATAACTATCGGAGCGCTCTGCCTGTTCT
TGACGGTTGTACCGAAAAGCAGTAAAGGCACAGAGGCCGAGGTGTCCGGTTAAGCTATACCCTAACCTGATGTCAGATGCCATGTGTAAATTGCGTCAGG
ATAGGATTGAATTTTGAATTTATTGACATATCTCGTTGAAGGTCATAGAGTCTTCCCTGACATTTTGCAGGGAATTCCATGACTGGACAGCGCATTGGGT
ATATCAGGGTCAGCACCTTCGACCAGAACCCGGAACGGCAACTGGAAGGCGTCAAGGTTGATCGCGCTTTTAGCGACAAGGCATCCGGCAAGGATGTCAA
GCGTCCGCAACTGGAAGCGCTGATAAGCTTCGCCCGCACCGGCGACACCGTGGTGGTGCATAGCATGGATCGCCTGGCGCGCAATCTCGATGATTTGCGC
CGGATCGTGCAAACGCTGACACAACGCGGCGTGCATATCGAATTCGTCAAGGAACACCTCAGTTTTACTGGCGAAGACTCTCCGATGGCGAACCTGATGC
TCTCGGTGATGGGCGCGTTCGCCGAGTTCGAGCGCGCCCTGATCCGCGAGCGTCAGCGCGAGGGTATTGCGCTCGCCAAGCAACGCGGGGCTTACCGTGG
CAGGAAGAAATCCCTGTCGTCTGAGCGTATTGCCGAACTGCGCCAACGTGTCGAGGCTGGCGAGCAAAAGACCAAGCTTGCTCGTGAATTCGGAATCAGT
CGCGAAACCCTGTATCAATACTTGAGAACGGATCAGTAAATATGCCACGTCGTTCCATCCTGTCCGCCGCCGAGCGGGAAAGCCTGCTGGCGTTGCCGGA
CTCCAAGGACGACCTGATCCGACATTACACATTCAACGATACCGACATCTCGATCATCCGACAGCGGCGCGGGCCAGCCAATCGGCTGGGCTTCGCGGTG
CAGCTCTGTTACCTGCGCTTTCCCGGCGTCATCCTGGGCGTCGATGAACTACCGTTCCCGCCCTTGTTGAAGCTGGTCGCCGACCAGCTCAAGGTCGGCG
TCGAAAGCTGGAACGAGTACGGCCAGCGGGAGCAGACCCGGCGCGAGCACCTGAGCGAGCTGGCGATGCAAACCGACAAAGGCATCGTGCTGGCCAGCGC
CTTGATCGGGCACCTGCGGCGGCAGTCGGTCATTCTGCCCGCCCTCAACGCCGTCGAGCGGGCGAGTGCCGAGGCGATCACCCGTGCTAACCGGCGCATC
TACGACGCCTTGGCCGAACCACTGGCGGACGCGCATCGCCGCCGCCTCGACGATCTGCTCAAGCGCCGGGACAACGGCAAGACGACCTGGTTGGCTTGGT
TGCGCCAGTCTCCGGCCAAGCCAAATTCGCGGCATATGCTGGAACACATCGAACGCCTCAAGGCATGGCAGGCACTCGATCTGCCTACCGGCATCGAGCG
GCTGGTTCACCAGAACCGCCTGCTCAAGATTGCCCGCGAGGGCGGCCAGATGACACCCGCCGACCTGGCCAAATTCGAGCCGCAACGGCGCTACGCCACT
CTCGTGGCGCTGGCCACCGAGGGCATGGCCACCGTCACCGACGAAATCATCGACCTGCACGACCGCATCCTGGGTAAGCTGTTTAACGCTGCCAAGAATA
AGCATCAGCAGCAGTTCCAGGCGTCAGGCAAGGCCATCAACGCCAAGGTACGTCTGTACGGGCGCATCGGTCAGGCGCTGATCGACGCCAAGCAATCAGG
CCGCGATGCGTTTGCCGCCATCGAGGCCGTCATGTCCTGGGATTCCTTTGCCGAGAGCGTCACCGAGGCGCAGAAGCTCGCGCAACCCGATGACTTCGAT
TTCCTGCATCGCATCGGCGAGAGCTACGCCACCCTGCGCCGCTATGCACCGGAATTCCTTGCCGTGCTCAAGCTGCGGGCCGCGCCCGCCGCCAAAAACG
TGCTTGATGCCATTGAGGTGCTGCGCGGCATGAACACCGACAACGCCCGCAAGCTGCCAGCCGATGCACCGACCGGCTTCATCAAGCCGCGCTGGCAGAA
ACTGGTGATGACCGACGCCGGCATCGACCGGCGCTACTACGAACTGTGCGCGCTGTCCGAGTTGAAGAACTCCCTGCGCTCGGGCGACATCTGGGTGCAG
GGTTCACGCCAGTTCAAGGACTTCGAGGACTACCTGGTACCGCCCGAGAAGTTCACCAGCCTCAAGCAGTCCAGCGAATTGCCGCTGGCCGTGGCCACCG
ACTGCGAACAATATCTGCATGAGCGGCTGACGCTGCTGGAAGCACAACTTGCCACCGTCAACCGCATGGCGGCAGCCAACGACCTGCCGGATGCCATCAT
CACCGAGTCGGGCTTGAAGATCACGCCGCTGGATGCGGCGGTGCCCGACACCGCGCAGGCGCTGATAGACCAGACAGCCATGGTCCTGCCGCACGTCAAG
ATCACCGAACTGCTGCTCGAAGTCGATGAGTGGACGGGCTTCACCCGGCACTTCACGCACTTGAAATCGGGCGATCTGGCCAAGGACAAGAACCTGTTGT
TGACCACGATCCTGGCCGACGCGATCAACCTGGGCCTGACCAAGATGGCCGAGTCCTGCCCCGGCACGACCTACGCGAAGCTCGCTTGGCTGCAAGCCTG
GCATACCCGCGACGAAACGTACTCGACAGCGTTGGCTGAACTGGTCAACGCTCAGTTTCGGCATCCCTTTGCCGGGCACTGGGGCGATGGCACCACATCA
TCATCGGACGGACAGAATTTCCAAACCGCTAGCAAGGCAAAGAGCACGGGGCACATCAACCCAAAATATGGCAGCAGCCCAGGACGGACTTTCTACACCC
ACATCTCCGACCAATACGCGCCATTCCACACCAAGGTGGTCAATGTCGGCCTGCGCGACTCAACCTACGTGCTCGACGGCCTGCTGTACCACGAATCCGA
CCTGCGGATCGAGGAGCACTACACCGACACGGCGGGCTTCACCGATCACGTCTTCGCCCTGATGCACCTCTTGGGCTTCCGCTTCGCGCCGCGCATCCGC
GACCTGGGCGACACCAAGCTCTACATCCCGAAGGGCGATGCCGCCTATGACGCGCTCAAGCCGATGATCGGCGGCACGCTCAACATCAAGCACGTCCGCG
CCCATTGGGACGAAATCCTGCGGCTGGCCACCTCGATCAAGCAGGGCACGGTGACGGCCTCGCTGATGCTCAGGAAACTCGGCAGCTACCCGCGCCAGAA
CGGCTTGGCCGTCGCGCTGCGCGAGTTGGGCCGCATCGAGCGCACGCTGTTCATCCTCGACTGGCTGCAAAGCGTCGAGCTACGCCGCCGCGTGCATGCC
GGGCTGAACAAGGGCGAGGCGCGCAATGCGCTGGCCCGTGCCGTGTTCTTCAACCGCCTTGGTGAAATCCGTGACCGAAGTTTCGAGCAGCAGCGCTACC
GGGCCAGCGGCCTCAACCTGGTGACGGCGGCCATCGTGCTGTGGAACACGGTCTACCTGGAGCGTGCGGCGCATGCGTTGCGCGGCAATGGTCATGCCGT
CGATGACTCGCTATTGCAGTACCTGTCGCCACTCGGCTGGGAGCACATCAACCTGACCGGTGATTACCTATGGCGCAGCAGCGCCAAGATCGGCGCGGGG
AAGTTCAGGCCGCTACGGCCTCTGCAACCGGCTTAGCGTGCTTTATTTTCCGTTTTCTGAGACGACCCC
AACCCTTGCAAAATGCCGCACGCCTCTACAGATCGAGAGCCAGAACACTTCTCGCGCAAATCAACCAAGTGCCGTTTTAACTGCAACAGCGCGGACACAC
GCATTTCCACCTGTTGAATATGGGCCTCCAGCAGCGTGTTGACCTCCCCACAGTCCTGCATCGGGTTGTCTCGCAGACCCAGCAATGCGCGAATCTCGCT
CAACGTCATCTCGAGCGAACGGCAATGACGGATGAATTGCAAGCGCTCAATGTGCGCCTCACCGTACAGCCGGAAGTTGCCACCGCTTCGCGCTGGCTTC
GGCAGTAGCCCTTCCTTCTCGTAGTAGCGGATGGTCACGACCTCGCACCCAGAGCGCTTGGCGAGGTCGCCAATTCTGATTTCCATGCATCAATCTCCAA
TTATCACTTGACTCTATAGTGACTATAGAGATTTTAATGGAGGCTGAATAGAAGATTTTCAGGAGTTACTCATGAGCGAATGCGCTTCAAAGGGGTGTGG
CTGCACGACTGAGCCGATCATCCAACCCACGGCACCGGCCCCGCTGGCAACCGGATCGGCTCAAGCGGTGTACCGCATCGAGAACATGGATTGCCCGACC
GAAGAGGCGCTGATCCGAAGCAAACTGGCCGGTCTGGCGGGGGTGGCAGGTCTTGAATTCAACCTGATGCAACGTACCTTGGCCGTGCGACACGAATTGC
CTTCGTTGTCTCCCGTCGAGCAGGCGCTGAAGGCCATCGGCATGCAAGCTGTGCGCATGGATCAGGCGTCGGCCGAGCAGACGACCAAGCTGTCCATTGC
CAAGATGGATTGCCCGACCGAAGAGACGTAGATCCGCAACAAGCTCGGCACCGTGGCCGGTGTTGCTGATCTCGATTTCAACCTGATGCAGCGCACGCTG
TCGGTACGCCATGCGAACCAGGTTCTGCCAGACGTGCTCGTGGCACTGCAAGCGCTTGGATTCGAGGCGCAGGTCGTGGACACGGCAGAGGTCGCATCTC
CATCCGCCGCCCCTGTGACCACGCCGACCAACTGGTGGCCGCTGGGCATCTCCTTGGTCACTGCATCGGCGGCCGAGGCGGTCTACTGGCTCCACAACGG
CAATCACTGGTCGGTTGTCGTTCTGGCGCTTGTCGCGGTCTTCACGGGTGGCCTCTCCACCTACAAGAAGGGGTGGATTGCGCTCAAGAACCGTAATCTC
AACATGAACGCCCTCATGTCGATTGCGGTCACGGGTGCCATGTTGATCGGCCACTGGCCCGAAGCGGCAATGGTGATGGTACTGTTCGCGCTGGCCGAGG
TAATCGAAGCCAAATCGCTGGATCGCGCTCGTAACGCTATCCGTGGCCTGCTCGACCTGACCCCGGAACAGGCCACGGTACAGCAGGCTGACGGCACATG
GCGCGAGGTGGGCGCCAAGCAAATCACCATCGGCGCCCGCGTCCGGGTCAAACCAGGTGAGCGCATCGCCCTTGATGGTGAGGTGCTGGAAGGCCGCTCT
GCCGTCAACCAAGCCCCGATCACGGGTGAAAGCCTCCCGGTCGAAAAATCCCCCGGTGATTCGGTGTTCGCTGGCACGATCAACGAATCCGGCTCGTTCG
AGTACCGCGTCACCGCCTTGGCCAACAACTCCACTTTGGCCCGGATCATTCACGCGGTAGAGGCTGCGCAAGGTAGTCGTGCGCCGACTCAGCGTTTTGT
CGATCAGTTCGCCCGCTGGTACACCCCCGTTGTATTCGGCGTTGCCATCGCCGTCGCGTTGTTGCCGCCGCTGTTCATGGGTGCGGCATGGCTCGACTGG
ATCTACCGTGCATTGGTTCTGCTGGTGGTCGCCTGCCCGTGCGCACTGGTGATCTCTACACCGGTCAGCATCGTCAGCGGCCTGGCCGCCGCCGCCCGCC
ACGGCATTCTCATCAAAGGTGGCGTCTATCTGGAAGAAGGCCGCAAGCTGCGCTGGCTGGCTCTGGACAAGACCGGCACGATCACGCACGGCAAGCCCGC
ACAGACCGACTTTGTCACATGGGGCAATGCACTCGCCTCGGACAGCCGCAGCATCGCTGCCAGTCTGGCGGCCCGCTCGGACCATCCTGTATCCAAGGCG
GTGGCACAGGCCGCGCAGACGGACGGGGTTGCCTTGCTCGACGTGGCCGAATTCAACGCGCTGCCCGGTCGGGGTGTGCAGGGCCAAATCAACGGTGAAA
CCTACCATCTTGGCAACCAGCGGATGCTAGAAGAGCTGGGGCAGCGTACTCCCGAGCTGGAACAGCGCATCGCGGCGCTGGAAACCATGGGTAAAACTGT
CGTGATGTTGGTCAGCGCAAAAGGGGTTCATGCCTTATTTGCCGTAGCGGACACCATCAAGGAAAGCAGCAGGAGCGCCATTGCCGAGCTTCATGCACTG
GGCATCAACACCATGATGCTGACCGGCGACAACCCCCACACGGCACAGGCCATTGCCGCACAAGCCGGGATCGACCGTGCGCAAGGCAATCTGCTCCCAG
ACGACAAACTGCGCGAAGTTGAGCTACTGGCCATAAAGGGCAAGGTCGGCATGGTCGGTGATGGCATCAACGATGCCCCGGCCTTGGCGCGTGCGGACAT
CGGCTTTGCCATGGGAGCGGCTGGCACAGATACCGCCATCGAGACCGCTGACGTGGCCCTGATGGACGACAACCTGGGCAAGATTCCGACCTTCGTGCGC
CTGTCGCGTGCGACGGCGCAGGTGCTGATGCAAAACATTGTGCTGGCCCTTGGCATCAAGGCAGTATTTCTGGTGCTGACCTTCACGGGTCAAGCGACCA
TGTGGATGGCGGTGTTTGCTGATATGGGGGCCAGCTTGCTCGTCGTTGGCAATGGCTTGAGGCTGTTGCGCAAATGAGCTGGAAATTCTTTCTCTACGAC
TGGGGTGGTCTGAACATCGCGTTGTTCCAAGCCATCAACATGAGCACACCTGCAGCGCTGGAACCGCTGGCATCGTTCTTCAACCTTGTGATAGGCAACT
ACTGGACTGCACCACTGATGCTCTTGGCGATGTGGGGATGGTCAAAGTCGGCACCTGACCCAACGCGGGCCGATGCCATCCGGTACAGACTCAGAGTCTT
TAGCGTGGCCTTTGCGTTGGCATTTCTCGTCGCCACCATCTTGAAGCTATGGATCGACTTTCCACGCCCGCCTGCCGTTTTTGGCGACATGGTGCGCGTT
ATCGGGGGCATCGAACGACACTACAGCCTGCCCAGCGGGCATGCCACCTATGCCGCGCTGGTGGTCGGCGCGCTCTGGCCTTTGATAGGCCGTCGTGGCC
GCATCGGCTTGGTGTTGTACGCCGCATTGGTCGGTTGGTCACGCATCGCAGCCGGAATGCACTTTCCTGCCGATGTGCTGGCGGGGTGGGTACTTGGATT
GAGTTGCACGGCGCTCGCCGGGTGGCTGATGCCGCTGGCCGCCCCTGTGTGGCAATCGGCTCGCCGCACATCGACTTGGGTCTGGTTCGCAGTGGCCGCC
AGTGCTGTCATGACCGATCAGCTCGCAAAGTTCGCCATCACCCGCACGTTTGCCTACGGTGAACAGGTCGAAGTCACGCCCTTCTTCAACTTCGTCCATG
TCCTGAATCCCGGCGCGGCATTCAGCTTTCTGGCGAACGCTGGCGGCTGGCAACGTTACTTTTTCATCACGCTGGGCCTGGTCGTTTCTGCTTGGCTGGG
ACGCATGCTGTGCCAGCAATTGCCCCGTCTCGAAGCGATGGGATACAGCCTGATCCTCGGCGGTGCGCTGGGCAATGTCGCGGATCGTGTGCTGCGTGGA
CAGGTTGTTGATTTCCTTGACTTCCATTGGCGACTTGCGCACTGGCCCGCCTTCAACCTCGCTGATGTGGCGATAACTATCGGAGCGCTCTGCCTGTTCT
TGACGGTTGTACCGAAAAGCAGTAAAGGCACAGAGGCCGAGGTGTCCGGTTAAGCTATACCCTAACCTGATGTCAGATGCCATGTGTAAATTGCGTCAGG
ATAGGATTGAATTTTGAATTTATTGACATATCTCGTTGAAGGTCATAGAGTCTTCCCTGACATTTTGCAGGGAATTCCATGACTGGACAGCGCATTGGGT
ATATCAGGGTCAGCACCTTCGACCAGAACCCGGAACGGCAACTGGAAGGCGTCAAGGTTGATCGCGCTTTTAGCGACAAGGCATCCGGCAAGGATGTCAA
GCGTCCGCAACTGGAAGCGCTGATAAGCTTCGCCCGCACCGGCGACACCGTGGTGGTGCATAGCATGGATCGCCTGGCGCGCAATCTCGATGATTTGCGC
CGGATCGTGCAAACGCTGACACAACGCGGCGTGCATATCGAATTCGTCAAGGAACACCTCAGTTTTACTGGCGAAGACTCTCCGATGGCGAACCTGATGC
TCTCGGTGATGGGCGCGTTCGCCGAGTTCGAGCGCGCCCTGATCCGCGAGCGTCAGCGCGAGGGTATTGCGCTCGCCAAGCAACGCGGGGCTTACCGTGG
CAGGAAGAAATCCCTGTCGTCTGAGCGTATTGCCGAACTGCGCCAACGTGTCGAGGCTGGCGAGCAAAAGACCAAGCTTGCTCGTGAATTCGGAATCAGT
CGCGAAACCCTGTATCAATACTTGAGAACGGATCAGTAAATATGCCACGTCGTTCCATCCTGTCCGCCGCCGAGCGGGAAAGCCTGCTGGCGTTGCCGGA
CTCCAAGGACGACCTGATCCGACATTACACATTCAACGATACCGACATCTCGATCATCCGACAGCGGCGCGGGCCAGCCAATCGGCTGGGCTTCGCGGTG
CAGCTCTGTTACCTGCGCTTTCCCGGCGTCATCCTGGGCGTCGATGAACTACCGTTCCCGCCCTTGTTGAAGCTGGTCGCCGACCAGCTCAAGGTCGGCG
TCGAAAGCTGGAACGAGTACGGCCAGCGGGAGCAGACCCGGCGCGAGCACCTGAGCGAGCTGGCGATGCAAACCGACAAAGGCATCGTGCTGGCCAGCGC
CTTGATCGGGCACCTGCGGCGGCAGTCGGTCATTCTGCCCGCCCTCAACGCCGTCGAGCGGGCGAGTGCCGAGGCGATCACCCGTGCTAACCGGCGCATC
TACGACGCCTTGGCCGAACCACTGGCGGACGCGCATCGCCGCCGCCTCGACGATCTGCTCAAGCGCCGGGACAACGGCAAGACGACCTGGTTGGCTTGGT
TGCGCCAGTCTCCGGCCAAGCCAAATTCGCGGCATATGCTGGAACACATCGAACGCCTCAAGGCATGGCAGGCACTCGATCTGCCTACCGGCATCGAGCG
GCTGGTTCACCAGAACCGCCTGCTCAAGATTGCCCGCGAGGGCGGCCAGATGACACCCGCCGACCTGGCCAAATTCGAGCCGCAACGGCGCTACGCCACT
CTCGTGGCGCTGGCCACCGAGGGCATGGCCACCGTCACCGACGAAATCATCGACCTGCACGACCGCATCCTGGGTAAGCTGTTTAACGCTGCCAAGAATA
AGCATCAGCAGCAGTTCCAGGCGTCAGGCAAGGCCATCAACGCCAAGGTACGTCTGTACGGGCGCATCGGTCAGGCGCTGATCGACGCCAAGCAATCAGG
CCGCGATGCGTTTGCCGCCATCGAGGCCGTCATGTCCTGGGATTCCTTTGCCGAGAGCGTCACCGAGGCGCAGAAGCTCGCGCAACCCGATGACTTCGAT
TTCCTGCATCGCATCGGCGAGAGCTACGCCACCCTGCGCCGCTATGCACCGGAATTCCTTGCCGTGCTCAAGCTGCGGGCCGCGCCCGCCGCCAAAAACG
TGCTTGATGCCATTGAGGTGCTGCGCGGCATGAACACCGACAACGCCCGCAAGCTGCCAGCCGATGCACCGACCGGCTTCATCAAGCCGCGCTGGCAGAA
ACTGGTGATGACCGACGCCGGCATCGACCGGCGCTACTACGAACTGTGCGCGCTGTCCGAGTTGAAGAACTCCCTGCGCTCGGGCGACATCTGGGTGCAG
GGTTCACGCCAGTTCAAGGACTTCGAGGACTACCTGGTACCGCCCGAGAAGTTCACCAGCCTCAAGCAGTCCAGCGAATTGCCGCTGGCCGTGGCCACCG
ACTGCGAACAATATCTGCATGAGCGGCTGACGCTGCTGGAAGCACAACTTGCCACCGTCAACCGCATGGCGGCAGCCAACGACCTGCCGGATGCCATCAT
CACCGAGTCGGGCTTGAAGATCACGCCGCTGGATGCGGCGGTGCCCGACACCGCGCAGGCGCTGATAGACCAGACAGCCATGGTCCTGCCGCACGTCAAG
ATCACCGAACTGCTGCTCGAAGTCGATGAGTGGACGGGCTTCACCCGGCACTTCACGCACTTGAAATCGGGCGATCTGGCCAAGGACAAGAACCTGTTGT
TGACCACGATCCTGGCCGACGCGATCAACCTGGGCCTGACCAAGATGGCCGAGTCCTGCCCCGGCACGACCTACGCGAAGCTCGCTTGGCTGCAAGCCTG
GCATACCCGCGACGAAACGTACTCGACAGCGTTGGCTGAACTGGTCAACGCTCAGTTTCGGCATCCCTTTGCCGGGCACTGGGGCGATGGCACCACATCA
TCATCGGACGGACAGAATTTCCAAACCGCTAGCAAGGCAAAGAGCACGGGGCACATCAACCCAAAATATGGCAGCAGCCCAGGACGGACTTTCTACACCC
ACATCTCCGACCAATACGCGCCATTCCACACCAAGGTGGTCAATGTCGGCCTGCGCGACTCAACCTACGTGCTCGACGGCCTGCTGTACCACGAATCCGA
CCTGCGGATCGAGGAGCACTACACCGACACGGCGGGCTTCACCGATCACGTCTTCGCCCTGATGCACCTCTTGGGCTTCCGCTTCGCGCCGCGCATCCGC
GACCTGGGCGACACCAAGCTCTACATCCCGAAGGGCGATGCCGCCTATGACGCGCTCAAGCCGATGATCGGCGGCACGCTCAACATCAAGCACGTCCGCG
CCCATTGGGACGAAATCCTGCGGCTGGCCACCTCGATCAAGCAGGGCACGGTGACGGCCTCGCTGATGCTCAGGAAACTCGGCAGCTACCCGCGCCAGAA
CGGCTTGGCCGTCGCGCTGCGCGAGTTGGGCCGCATCGAGCGCACGCTGTTCATCCTCGACTGGCTGCAAAGCGTCGAGCTACGCCGCCGCGTGCATGCC
GGGCTGAACAAGGGCGAGGCGCGCAATGCGCTGGCCCGTGCCGTGTTCTTCAACCGCCTTGGTGAAATCCGTGACCGAAGTTTCGAGCAGCAGCGCTACC
GGGCCAGCGGCCTCAACCTGGTGACGGCGGCCATCGTGCTGTGGAACACGGTCTACCTGGAGCGTGCGGCGCATGCGTTGCGCGGCAATGGTCATGCCGT
CGATGACTCGCTATTGCAGTACCTGTCGCCACTCGGCTGGGAGCACATCAACCTGACCGGTGATTACCTATGGCGCAGCAGCGCCAAGATCGGCGCGGGG
AAGTTCAGGCCGCTACGGCCTCTGCAACCGGCTTAGCGTGCTTTATTTTCCGTTTTCTGAGACGACCCC
Protein section
ORF number : 5
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 441 bp | 146 aa | 486 | 46 | - | No |
Annotation : MerR family transcriptional regulatorDescription : Transcriptional Regulator factor
ORF sequence :
MEIRIGDLAKRSGCEVVTIRYYEKEGLLPKPARSGGNFRLYGEAHIERLQFIRHCRSLEMTLSEIRALLGLRDNPMQDCGEVNTLLEAHIQQVEMRVSAL
LQLKRHLVDLREKCSGSRSVEACGILQGLGNCNCHGESATNSQTSG
LQLKRHLVDLREKCSGSRSVEACGILQGLGNCNCHGESATNSQTSG
Blast result :ORF 2
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2406 bp | 801 aa | 572 | 2977 | + | No |
Annotation : 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylaseDescription :
ORF sequence :
Blast result :Comments : This orf is a pseudogene (in-frame stop codon so may not be functional)ORF 3
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1080 bp | 359 aa | 2974 | 4053 | + | No |
Annotation : signal peptidase IIDescription :
ORF sequence :
MSWKFFLYDWGGLNIALFQAINMSTPAALEPLASFFNLVIGNYWTAPLMLLAMWGWSKSAPDPTRADAIRYRLRVFSVAFALAFLVATILKLWIDFPRPP
AVFGDMVRVIGGIERHYSLPSGHATYAALVVGALWPLIGRRGRIGLVLYAALVGWSRIAAGMHFPADVLAGWVLGLSCTALAGWLMPLAAPVWQSARRTS
TWVWFAVAASAVMTDQLAKFAITRTFAYGEQVEVTPFFNFVHVLNPGAAFSFLANAGGWQRYFFITLGLVVSAWLGRMLCQQLPRLEAMGYSLILGGALG
NVADRVLRGQVVDFLDFHWRLAHWPAFNLADVAITIGALCLFLTVVPKSSKGTEAEVSG
AVFGDMVRVIGGIERHYSLPSGHATYAALVVGALWPLIGRRGRIGLVLYAALVGWSRIAAGMHFPADVLAGWVLGLSCTALAGWLMPLAAPVWQSARRTS
TWVWFAVAASAVMTDQLAKFAITRTFAYGEQVEVTPFFNFVHVLNPGAAFSFLANAGGWQRYFFITLGLVVSAWLGRMLCQQLPRLEAMGYSLILGGALG
NVADRVLRGQVVDFLDFHWRLAHWPAFNLADVAITIGALCLFLTVVPKSSKGTEAEVSG
Blast result :ORF 4
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 559 bp | 186 aa | 4181 | 4739 | + | No |
AG : Tn3 resolvase
ORF sequence :
MTGQRIGYIRVSTFDQNPERQLEGVKVDRAFSDKASGKDVKRPQLEALISFARTGDTVVVHSMDRLARNLDDLRRIVQTLTQRGVHIEFVKEHLSFTGED
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
SPMANLMLSVMGAFAEFERALIRERQREGIALAKQRGAYRGRKKSLSSERIAELRQRVEAGEQKTKLAREFGISRETLYQYLRTDQ
Blast result :ORF 5
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 2895 bp | 964 aa | 4742 | 7636 | + | No |
Chemistry : DDE
ORF sequence :
MPRRSILSAAERESLLALPDSKDDLIRHYTFNDTDISIIRQRRGPANRLGFAVQLCYLRFPGVILGVDELPFPPLLKLVADQLKVGVESWNEYGQREQTR
REHLSELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHML
EHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAIN
AKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTD
NARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLE
AQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLT
KMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFQTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVV
NVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIK
QGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVL
WNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
REHLSELAMQTDKGIVLASALIGHLRRQSVILPALNAVERASAEAITRANRRIYDALAEPLADAHRRRLDDLLKRRDNGKTTWLAWLRQSPAKPNSRHML
EHIERLKAWQALDLPTGIERLVHQNRLLKIAREGGQMTPADLAKFEPQRRYATLVALATEGMATVTDEIIDLHDRILGKLFNAAKNKHQQQFQASGKAIN
AKVRLYGRIGQALIDAKQSGRDAFAAIEAVMSWDSFAESVTEAQKLAQPDDFDFLHRIGESYATLRRYAPEFLAVLKLRAAPAAKNVLDAIEVLRGMNTD
NARKLPADAPTGFIKPRWQKLVMTDAGIDRRYYELCALSELKNSLRSGDIWVQGSRQFKDFEDYLVPPEKFTSLKQSSELPLAVATDCEQYLHERLTLLE
AQLATVNRMAAANDLPDAIITESGLKITPLDAAVPDTAQALIDQTAMVLPHVKITELLLEVDEWTGFTRHFTHLKSGDLAKDKNLLLTTILADAINLGLT
KMAESCPGTTYAKLAWLQAWHTRDETYSTALAELVNAQFRHPFAGHWGDGTTSSSDGQNFQTASKAKSTGHINPKYGSSPGRTFYTHISDQYAPFHTKVV
NVGLRDSTYVLDGLLYHESDLRIEEHYTDTAGFTDHVFALMHLLGFRFAPRIRDLGDTKLYIPKGDAAYDALKPMIGGTLNIKHVRAHWDEILRLATSIK
QGTVTASLMLRKLGSYPRQNGLAVALRELGRIERTLFILDWLQSVELRRRVHAGLNKGEARNALARAVFFNRLGEIRDRSFEQQRYRASGLNLVTAAIVL
WNTVYLERAAHALRGNGHAVDDSLLQYLSPLGWEHINLTGDYLWRSSAKIGAGKFRPLRPLQPA
Blast result :
Comments
This transposon encodes a heavy metal efflux pump, and a signal-peptidase II domain protein which frequently occurs in other Shewanella Tn3 type transposons.
The second is a pseudogene.
The ISShes11 tranposase (ORF5) has 81% identity with that encoded by ISSod9 and the resolvase (ORF4) 58% with ISArsp6.
The second is a pseudogene.
The ISShes11 tranposase (ORF5) has 81% identity with that encoded by ISSod9 and the resolvase (ORF4) 58% with ISArsp6.
References
1] Romine, M.F. (2008) Direct submission.