ISPmar1

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GU997095 Y Paracoccus marcusii
Paracoccus marcusii DSM 11574
DNA section
IS Length : 821 bp

Ends


IR Length : 18/21

IRL : GGATCTGTCGCAAATTTTTCGCAAGGTCCAAGCCGGAAAGATAGAATGGC
IRR : GGTTCTGTCGCAAATTGTACGTCGAGACGCACGGCGTCGATGACTGCCTC

Insertion site


Left flankDirect repeatRight flankDR Length
CATGGAATTACCTTCAACCTCAAGCCAGA9

DNA sequence

GGATCTGTCGCAAATTTTTCGCAAGGTCCAAGCCGGAAAGATAGAATGGCGTGAAGTCGGCCGTTTTTGCTGAGGATTGTGCAATGAGCGTATCATTCAA
AGGTGCCCACTTTCCCAAGGACGTGATCCTGCACGCGGTCTTTTTCTACCTGCGCTACGGGGTGTCCTACCGAGACCTTGAGGAGATCATGGCCGAGCGA
GGTGTCACGGTTGACCATGCCACACTCAACCGATGGGTGGAGCGGTACGCGGGTCAGGTCGCGGAAGATGCGCGGCGGCGCAAGCAACCCACTGACAGAT
CCTGGCGCATGGACGAGACCTACATCAAGGTGAAAGGCCAGTGGGTCTATCTTTACCGCGCCGTCGACAAGTTCGGGAAGACGCTGGACTTCATGCTCTC
GGAGCGCCGCAACAAGCCCGCGGCGATCAAGTTCTTCGCCCGCGCGATGGAGGTGAACGGCCTGCCCCGCAAAATCGTCATCGACAAGAGTGCAGCCAAC
ACCGAAGGCATCAAGGACATCAACCGGATGTTGAAGCGGTTCGGATGCCCGGTCGCGATCGAGATGGTGCGGATCAAGTATCTTAACAATCTTGTCGAGC
AGGACCACCGTTTCATCAAACGCCGGGTGAGACCAATGCTCGGCTTCAAGAGCTTCAAGTCAGCCGCGTCAACCATCGCCGGGATCGAGCTGGTCAACAT
GATCCGCAAGGGGCAGTTCAGACCAGAGCTTCGCCCATTTCAGACGTTCCGTCAGATCGCCGGCTGAAGTCGAGGCAGTCATCGACGCCGTGCGTCTCGA
CGTACAATTTGCGACAGAACC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
684 bp227 aa84767+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSVSFKGAHFPKDVILHAVFFYLRYGVSYRDLEEIMAERGVTVDHATLNRWVERYAGQVAEDARRRKQPTDRSWRMDETYIKVKGQWVYLYRAVDKFGKT
LDFMLSERRNKPAAIKFFARAMEVNGLPRKIVIDKSAANTEGIKDINRMLKRFGCPVAIEMVRIKYLNNLVEQDHRFIKRRVRPMLGFKSFKSAASTIAG
IELVNMIRKGQFRPELRPFQTFRQIAG

 

Blast result :
Comments
ISPmar1 has been identified by its transposition into entrapment vector pMMB2 (cI-tetA cassette). ISPmar1 is 61% (ORF1) aa identical to IS2020. As judged from DNA hybridization analysis ISPmar1 is present in 2 copies in the chromosome of P. marcusii DSM 11574.
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277