ISPmar1
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GU997095 | Y | Paracoccus marcusii | Paracoccus marcusii DSM 11574 |
DNA section
IS Length : 821 bp
Ends
IR Length : 18/21
IRL : GGATCTGTCGCAAATTTTTCGCAAGGTCCAAGCCGGAAAGATAGAATGGC
IRR : GGTTCTGTCGCAAATTGTACGTCGAGACGCACGGCGTCGATGACTGCCTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CATGGAATTA | CCTTCAACC | TCAAGCCAGA | 9 |
DNA sequence
GGATCTGTCGCAAATTTTTCGCAAGGTCCAAGCCGGAAAGATAGAATGGCGTGAAGTCGGCCGTTTTTGCTGAGGATTGTGCAATGAGCGTATCATTCAA
AGGTGCCCACTTTCCCAAGGACGTGATCCTGCACGCGGTCTTTTTCTACCTGCGCTACGGGGTGTCCTACCGAGACCTTGAGGAGATCATGGCCGAGCGA
GGTGTCACGGTTGACCATGCCACACTCAACCGATGGGTGGAGCGGTACGCGGGTCAGGTCGCGGAAGATGCGCGGCGGCGCAAGCAACCCACTGACAGAT
CCTGGCGCATGGACGAGACCTACATCAAGGTGAAAGGCCAGTGGGTCTATCTTTACCGCGCCGTCGACAAGTTCGGGAAGACGCTGGACTTCATGCTCTC
GGAGCGCCGCAACAAGCCCGCGGCGATCAAGTTCTTCGCCCGCGCGATGGAGGTGAACGGCCTGCCCCGCAAAATCGTCATCGACAAGAGTGCAGCCAAC
ACCGAAGGCATCAAGGACATCAACCGGATGTTGAAGCGGTTCGGATGCCCGGTCGCGATCGAGATGGTGCGGATCAAGTATCTTAACAATCTTGTCGAGC
AGGACCACCGTTTCATCAAACGCCGGGTGAGACCAATGCTCGGCTTCAAGAGCTTCAAGTCAGCCGCGTCAACCATCGCCGGGATCGAGCTGGTCAACAT
GATCCGCAAGGGGCAGTTCAGACCAGAGCTTCGCCCATTTCAGACGTTCCGTCAGATCGCCGGCTGAAGTCGAGGCAGTCATCGACGCCGTGCGTCTCGA
CGTACAATTTGCGACAGAACC
AGGTGCCCACTTTCCCAAGGACGTGATCCTGCACGCGGTCTTTTTCTACCTGCGCTACGGGGTGTCCTACCGAGACCTTGAGGAGATCATGGCCGAGCGA
GGTGTCACGGTTGACCATGCCACACTCAACCGATGGGTGGAGCGGTACGCGGGTCAGGTCGCGGAAGATGCGCGGCGGCGCAAGCAACCCACTGACAGAT
CCTGGCGCATGGACGAGACCTACATCAAGGTGAAAGGCCAGTGGGTCTATCTTTACCGCGCCGTCGACAAGTTCGGGAAGACGCTGGACTTCATGCTCTC
GGAGCGCCGCAACAAGCCCGCGGCGATCAAGTTCTTCGCCCGCGCGATGGAGGTGAACGGCCTGCCCCGCAAAATCGTCATCGACAAGAGTGCAGCCAAC
ACCGAAGGCATCAAGGACATCAACCGGATGTTGAAGCGGTTCGGATGCCCGGTCGCGATCGAGATGGTGCGGATCAAGTATCTTAACAATCTTGTCGAGC
AGGACCACCGTTTCATCAAACGCCGGGTGAGACCAATGCTCGGCTTCAAGAGCTTCAAGTCAGCCGCGTCAACCATCGCCGGGATCGAGCTGGTCAACAT
GATCCGCAAGGGGCAGTTCAGACCAGAGCTTCGCCCATTTCAGACGTTCCGTCAGATCGCCGGCTGAAGTCGAGGCAGTCATCGACGCCGTGCGTCTCGA
CGTACAATTTGCGACAGAACC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
684 bp | 227 aa | 84 | 767 | + | No |
Chemistry : DDE
ORF sequence :
MSVSFKGAHFPKDVILHAVFFYLRYGVSYRDLEEIMAERGVTVDHATLNRWVERYAGQVAEDARRRKQPTDRSWRMDETYIKVKGQWVYLYRAVDKFGKT
LDFMLSERRNKPAAIKFFARAMEVNGLPRKIVIDKSAANTEGIKDINRMLKRFGCPVAIEMVRIKYLNNLVEQDHRFIKRRVRPMLGFKSFKSAASTIAG
IELVNMIRKGQFRPELRPFQTFRQIAG
LDFMLSERRNKPAAIKFFARAMEVNGLPRKIVIDKSAANTEGIKDINRMLKRFGCPVAIEMVRIKYLNNLVEQDHRFIKRRVRPMLGFKSFKSAASTIAG
IELVNMIRKGQFRPELRPFQTFRQIAG
Blast result :
Comments
ISPmar1 has been identified by its transposition into entrapment vector pMMB2 (cI-tetA cassette). ISPmar1 is 61% (ORF1) aa identical to IS2020. As judged from DNA hybridization analysis ISPmar1 is present in 2 copies in the chromosome of P. marcusii DSM 11574.
References
1] Dziewit, L. and Bartosik, D. (2010) Direct submission
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277