ISPak1
- Family IS5
- Group IS427
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GQ871938 | Y | Paracoccus alkenifer | Paracoccus alkenifer DSM 11593 |
DNA section
IS Length : 853 bp
Ends
IR Length : 13/15
IRL : GGGTCAGGACCCATTGATTTCAGCCGCGCGGCATGATTCAGGCTCCGCAA
IRR : GGGTCAGGACTCGTTCTCGATTCATAGCCAGAACATGACGGTTGCGGCGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCGGAGATCC | TA | AAAATGCGGA | 2 |
DNA sequence
GGGTCAGGACCCATTGATTTCAGCCGCGCGGCATGATTCAGGCTCCGCAAGGAGGCTGGATCATGAGCAACCTTTTCTGGCTGACGGATGCGCAGATGGC
CCGCCTTCAGCCGTTTTTCCCGAAGAGCCACGGCAAGCCGCGCGTCGATGACCGGCGTGTTCTCAGCGGCATTATCTTCATCAATCGCAATGGCTTGCGG
TGGTGCGATGCGCCCAAGGAGTATGGTCCACCGAAGACCCTCTATAATCGTTGGAAGCGCTGGGGCGAGAAAGGCGTCTTCGCCCGGATGATGGAAGGCC
TGGCCTCCGAGGCGGCCGTTCCGAAGACGGTGATGATAGACGCGACCTATCTGAAGGCGCATCGCACGGCCTCCAGCCTGCGGGCGAAAAAAGGGGGCCC
GGCGACCAGAGGGGCCGCCTGATCGGCCGCACCAAAGGCGGCATGAACACCAAACTGCACGCCGTCACCGACGCTGATGGGCGGCCGATCCGGTTCTTCA
TGACTGCAGGTCAGGTGAGCGACTACAGCGGTGCTGCGGCCCTGTTGGGCAGCTTGCCGGCGGCAGAATGGCTGCTGGGCGACCGTGGCTATGATGCCGA
TTGGTTCAGAGATGCGTTGAAAGACAAGGGGATTAAGCCCTGCATACCGGGACGGAAGTCCCGTGGAAAACCCGTCAAGTATGACAAGCGCCGCTACAAA
CGCCGCAACCGGATCGAGATCATGTTCGGGCGGCTGAAGGACTGGCGACGGGTCGCAACCCGTTACGACAGATGCCCGAAGGTCTTCCTCTCAGCCATCG
CCCTCGCCGCAACCGTCATGTTCTGGCTATGAATCGAGAACGAGTCCTGACCC
CCGCCTTCAGCCGTTTTTCCCGAAGAGCCACGGCAAGCCGCGCGTCGATGACCGGCGTGTTCTCAGCGGCATTATCTTCATCAATCGCAATGGCTTGCGG
TGGTGCGATGCGCCCAAGGAGTATGGTCCACCGAAGACCCTCTATAATCGTTGGAAGCGCTGGGGCGAGAAAGGCGTCTTCGCCCGGATGATGGAAGGCC
TGGCCTCCGAGGCGGCCGTTCCGAAGACGGTGATGATAGACGCGACCTATCTGAAGGCGCATCGCACGGCCTCCAGCCTGCGGGCGAAAAAAGGGGGCCC
GGCGACCAGAGGGGCCGCCTGATCGGCCGCACCAAAGGCGGCATGAACACCAAACTGCACGCCGTCACCGACGCTGATGGGCGGCCGATCCGGTTCTTCA
TGACTGCAGGTCAGGTGAGCGACTACAGCGGTGCTGCGGCCCTGTTGGGCAGCTTGCCGGCGGCAGAATGGCTGCTGGGCGACCGTGGCTATGATGCCGA
TTGGTTCAGAGATGCGTTGAAAGACAAGGGGATTAAGCCCTGCATACCGGGACGGAAGTCCCGTGGAAAACCCGTCAAGTATGACAAGCGCCGCTACAAA
CGCCGCAACCGGATCGAGATCATGTTCGGGCGGCTGAAGGACTGGCGACGGGTCGCAACCCGTTACGACAGATGCCCGAAGGTCTTCCTCTCAGCCATCG
CCCTCGCCGCAACCGTCATGTTCTGGCTATGAATCGAGAACGAGTCCTGACCC
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
390 bp | 129 aa | 33 | 422 | + | No |
Description : First part of the transposase
ORF sequence :
MIQAPQGGWIMSNLFWLTDAQMARLQPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPPKTLYNRWKRWGEKGVFARMMEGLASEAAVPKTV
MIDATYLKAHRTASSLRAKKGGPATRGAA
MIDATYLKAHRTASSLRAKKGGPATRGAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
582 bp | 193 aa | 251 | 832 | + | No |
Description : Second part of the transposase
ORF sequence :
LEALGRERRLRPDDGRPGLRGGRSEDGDDRRDLSEGASHGLQPAGEKRGPGDQRGRLIGRTKGGMNTKLHAVTDADGRPIRFFMTAGQVSDYSGAAALLG
SLPAAEWLLGDRGYDADWFRDALKDKGIKPCIPGRKSRGKPVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAIALAATVMFWL
SLPAAEWLLGDRGYDADWFRDALKDKGIKPCIPGRKSRGKPVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAIALAATVMFWL
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
800 bp | 266 aa | 33 | 832 | + | Yes |
Chemistry : DDE
ORF sequence :
MIQAPQGGWIMSNLFWLTDAQMARLQPFFPKSHGKPRVDDRRVLSGIIFINRNGLRWCDAPKEYGPPKTLYNRWKRWGEKGVFARMMEGLASEAAVPKTV
MIDATYLKAHRTASSLRAKKRGPGDQRGRLIGRTKGGMNTKLHAVTDADGRPIRFFMTAGQVSDYSGAAALLGSLPAAEWLLGDRGYDADWFRDALKDKG
IKPCIPGRKSRGKPVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAIALAATVMFWL
MIDATYLKAHRTASSLRAKKRGPGDQRGRLIGRTKGGMNTKLHAVTDADGRPIRFFMTAGQVSDYSGAAALLGSLPAAEWLLGDRGYDADWFRDALKDKG
IKPCIPGRKSRGKPVKYDKRRYKRRNRIEIMFGRLKDWRRVATRYDRCPKVFLSAIALAATVMFWL
Blast result :
Comments
References
1] Bartosik, D. (2010) Direct submission.
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277