ISPam2
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GQ468940 | Y | Paracoccus aminophilus | Paracoccus aminophilus JCM 7686 |
DNA section
IS Length : 1054 bp
Ends
IR Length : 18/19
IRL : GGCTTTGTTGCAGAAGTCCCCAGGGAGCAGGATTCACACGGGGAATCCAT
IRR : GGCATTGTTGCAGAAGTCCGGCTGCGGCCAGACGCGCCCCTTTCCCCGTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAGAACATGT | AAATCGATG | TGTCATCCGC | 9 |
DNA sequence
GGCTTTGTTGCAGAAGTCCCCAGGGAGCAGGATTCACACGGGGAATCCATGGGGTTAATGGTCTGAGATGACGAGACCTGATCCTGCCCGCTATCGGACG
AATAACTGGAAGAGTTACAACGAGGCCCTGAAGCGGCGCGGTTCCCTGCTGATCTGGTTGGACAAAGACATGACGTGGCTTGCGCCGAAGGCCGGTGGCA
ATGGCCGACCGCCGGTGTTCAGCGATGCATCTGTCCAGTTTTGTTTGATGGTGAAGGTTCTGTTCGGGCTCCCACTTCGCCAGACGACCGGGATGGTGGC
AAGCATTCTGTCGATGGCCGGTCTGGACTGGCCGGTGCCTGACTTTTCGACCCTGAGCCGTCGGCAGAAGCGCATCACGGTGCAAATATCGAACCGCCGT
GCGTCCGGTCCGCTCAACCTGCTTGTTGACAGCACCGGAATAAAGTTCCTCGGGGATGGGGAGTGGCTTGCGCGTAAGCACGGCACGCAGCGTCGGCGCC
AATATCGCAAGGTTCATTTGGCGATGGATACGGCCACCGGCGACATCCGTGCAGTAGAGTTCACCTCGAGCGACAAGGGCGACAGCCCCGTTCTGCCCCA
CCTGCTGGACCAGATCCCTGCCGATGAACAGATCGGCACCGTGACCGGCGATGGCGCTTTTGACACAAGGCGATGCCATAGCGCGATCCTCGAGCGCGGT
GGAACGGCGATCATACCCATCCGCAAGAACGGGCGGCGATGGCGGGAGAACTGTCCCGCCGCCAGGGCCCGCAACGAGATCCTCAAGGCGACACAACGCC
TGGGGCGGGCAGTCTGGAAACGCTGGTCAGGATATCACGCCCGAAGCCGGATCGAGGCCAAGATGAGGTGTCTCAAGTCGTTCGGGGAACGCATTGCATC
ACGCGACCCGGATCGCCAAACCGCCGAGGTCCAGATCCGCGTAGCACTCATGAACCGCTTCAATGCACTCGGCACTGCCGAGATTGAACGCGTGGCCTGA
ACCCAACGGGGAAAGGGGCGCGTCTGGCCGCAGCCGGACTTCTGCAACAATGCC
AATAACTGGAAGAGTTACAACGAGGCCCTGAAGCGGCGCGGTTCCCTGCTGATCTGGTTGGACAAAGACATGACGTGGCTTGCGCCGAAGGCCGGTGGCA
ATGGCCGACCGCCGGTGTTCAGCGATGCATCTGTCCAGTTTTGTTTGATGGTGAAGGTTCTGTTCGGGCTCCCACTTCGCCAGACGACCGGGATGGTGGC
AAGCATTCTGTCGATGGCCGGTCTGGACTGGCCGGTGCCTGACTTTTCGACCCTGAGCCGTCGGCAGAAGCGCATCACGGTGCAAATATCGAACCGCCGT
GCGTCCGGTCCGCTCAACCTGCTTGTTGACAGCACCGGAATAAAGTTCCTCGGGGATGGGGAGTGGCTTGCGCGTAAGCACGGCACGCAGCGTCGGCGCC
AATATCGCAAGGTTCATTTGGCGATGGATACGGCCACCGGCGACATCCGTGCAGTAGAGTTCACCTCGAGCGACAAGGGCGACAGCCCCGTTCTGCCCCA
CCTGCTGGACCAGATCCCTGCCGATGAACAGATCGGCACCGTGACCGGCGATGGCGCTTTTGACACAAGGCGATGCCATAGCGCGATCCTCGAGCGCGGT
GGAACGGCGATCATACCCATCCGCAAGAACGGGCGGCGATGGCGGGAGAACTGTCCCGCCGCCAGGGCCCGCAACGAGATCCTCAAGGCGACACAACGCC
TGGGGCGGGCAGTCTGGAAACGCTGGTCAGGATATCACGCCCGAAGCCGGATCGAGGCCAAGATGAGGTGTCTCAAGTCGTTCGGGGAACGCATTGCATC
ACGCGACCCGGATCGCCAAACCGCCGAGGTCCAGATCCGCGTAGCACTCATGAACCGCTTCAATGCACTCGGCACTGCCGAGATTGAACGCGTGGCCTGA
ACCCAACGGGGAAAGGGGCGCGTCTGGCCGCAGCCGGACTTCTGCAACAATGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 68 | 1000 | + | No |
Chemistry : DDE
ORF sequence :
MTRPDPARYRTNNWKSYNEALKRRGSLLIWLDKDMTWLAPKAGGNGRPPVFSDASVQFCLMVKVLFGLPLRQTTGMVASILSMAGLDWPVPDFSTLSRRQ
KRITVQISNRRASGPLNLLVDSTGIKFLGDGEWLARKHGTQRRRQYRKVHLAMDTATGDIRAVEFTSSDKGDSPVLPHLLDQIPADEQIGTVTGDGAFDT
RRCHSAILERGGTAIIPIRKNGRRWRENCPAARARNEILKATQRLGRAVWKRWSGYHARSRIEAKMRCLKSFGERIASRDPDRQTAEVQIRVALMNRFNA
LGTAEIERVA
KRITVQISNRRASGPLNLLVDSTGIKFLGDGEWLARKHGTQRRRQYRKVHLAMDTATGDIRAVEFTSSDKGDSPVLPHLLDQIPADEQIGTVTGDGAFDT
RRCHSAILERGGTAIIPIRKNGRRWRENCPAARARNEILKATQRLGRAVWKRWSGYHARSRIEAKMRCLKSFGERIASRDPDRQTAEVQIRVALMNRFNA
LGTAEIERVA
Blast result :
Comments
References
1] Bartosik, D. (2010) Direct submission.
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277