ISPam2

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
GQ468940 Y Paracoccus aminophilus
Paracoccus aminophilus JCM 7686
DNA section
IS Length : 1054 bp

Ends


IR Length : 18/19

IRL : GGCTTTGTTGCAGAAGTCCCCAGGGAGCAGGATTCACACGGGGAATCCAT
IRR : GGCATTGTTGCAGAAGTCCGGCTGCGGCCAGACGCGCCCCTTTCCCCGTT

Insertion site


Left flankDirect repeatRight flankDR Length
TAGAACATGTAAATCGATGTGTCATCCGC9

DNA sequence

GGCTTTGTTGCAGAAGTCCCCAGGGAGCAGGATTCACACGGGGAATCCATGGGGTTAATGGTCTGAGATGACGAGACCTGATCCTGCCCGCTATCGGACG
AATAACTGGAAGAGTTACAACGAGGCCCTGAAGCGGCGCGGTTCCCTGCTGATCTGGTTGGACAAAGACATGACGTGGCTTGCGCCGAAGGCCGGTGGCA
ATGGCCGACCGCCGGTGTTCAGCGATGCATCTGTCCAGTTTTGTTTGATGGTGAAGGTTCTGTTCGGGCTCCCACTTCGCCAGACGACCGGGATGGTGGC
AAGCATTCTGTCGATGGCCGGTCTGGACTGGCCGGTGCCTGACTTTTCGACCCTGAGCCGTCGGCAGAAGCGCATCACGGTGCAAATATCGAACCGCCGT
GCGTCCGGTCCGCTCAACCTGCTTGTTGACAGCACCGGAATAAAGTTCCTCGGGGATGGGGAGTGGCTTGCGCGTAAGCACGGCACGCAGCGTCGGCGCC
AATATCGCAAGGTTCATTTGGCGATGGATACGGCCACCGGCGACATCCGTGCAGTAGAGTTCACCTCGAGCGACAAGGGCGACAGCCCCGTTCTGCCCCA
CCTGCTGGACCAGATCCCTGCCGATGAACAGATCGGCACCGTGACCGGCGATGGCGCTTTTGACACAAGGCGATGCCATAGCGCGATCCTCGAGCGCGGT
GGAACGGCGATCATACCCATCCGCAAGAACGGGCGGCGATGGCGGGAGAACTGTCCCGCCGCCAGGGCCCGCAACGAGATCCTCAAGGCGACACAACGCC
TGGGGCGGGCAGTCTGGAAACGCTGGTCAGGATATCACGCCCGAAGCCGGATCGAGGCCAAGATGAGGTGTCTCAAGTCGTTCGGGGAACGCATTGCATC
ACGCGACCCGGATCGCCAAACCGCCGAGGTCCAGATCCGCGTAGCACTCATGAACCGCTTCAATGCACTCGGCACTGCCGAGATTGAACGCGTGGCCTGA
ACCCAACGGGGAAAGGGGCGCGTCTGGCCGCAGCCGGACTTCTGCAACAATGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
933 bp310 aa681000+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTRPDPARYRTNNWKSYNEALKRRGSLLIWLDKDMTWLAPKAGGNGRPPVFSDASVQFCLMVKVLFGLPLRQTTGMVASILSMAGLDWPVPDFSTLSRRQ
KRITVQISNRRASGPLNLLVDSTGIKFLGDGEWLARKHGTQRRRQYRKVHLAMDTATGDIRAVEFTSSDKGDSPVLPHLLDQIPADEQIGTVTGDGAFDT
RRCHSAILERGGTAIIPIRKNGRRWRENCPAARARNEILKATQRLGRAVWKRWSGYHARSRIEAKMRCLKSFGERIASRDPDRQTAEVQIRVALMNRFNA
LGTAEIERVA

 

Blast result :
Comments
References
1] Bartosik, D. (2010) Direct submission.
2] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277