ISVsp17
- Family ISL3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1327 bp
Ends
IR Length : 20/25
IRL : GGCGCTTCGCTGAATTGAGTGGGTAGATTCTGGTCTTTTGTGGGGATTTT
IRR : GGCTCTTCGCTGTTATGGGTGGGTAAATGCGGGCCGGAGCTTCAAGTCCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCCTTTTTCA | ATTTTTTG | TCATGGTCGA | 8 |
DNA sequence
GGCGCTTCGCTGAATTGAGTGGGTAGATTCTGGTCTTTTGTGGGGATTTTGCTAGAGGATAGGCATGGATCAGAACAGCTTGTTTGAGGCAGCATTGGGG
CTGACGGCACCTTGGAAGGTCATCGGCAGTGGTCTGGAGCGCGATCAGAGCGGCAAGATGTTCCTGTGCCTGGAGATTGAGGTGCAGTCCGGTGCGAAGT
TGCCCTGTCCCTGCTGTAGCAAGCTTTGCACGTCCTATGATCACGAGTTGAAGCGCTGGCGGCATTTGAACTTCTGGCAGCATGCCACTTACTTGAGTGC
GAGGGTGCCGCGGGTGGATTGTCCTGAACACGGGGTGAGGCAGGTGGAGGTTCCTTGGGCGCGAGCGGGCAGCGGCTTTACGCTGATGTTTGAAGCGCTG
GTGATGGCCCTGTCCCGAGAGATGCCCGTCAGCGCGGTGGCCGGTCTGGTGGGAGAGACCGACACCCGGTTGTGGCGGGTGGTGCATCACTATGTGGGAC
AGGCCCATGCTTCCCAAGACTGGAGCGAGGTCCATGTTCTGGCCATTGATGAGACTGCCACGCGCAAAGGCCACCGCTATGCCACAGTGGCGGTTGATCT
TCGACCTGAGACAGGAGCCTCAGCACGCTTGTTGTTCATGACCCCGGGGCGCAGTGGCGAGTGTGTCGAGCTGGTGGCTCAAGCCATGCCCGCGCATGGG
GCGCAGCCAAGCCAGGTCAAAGTGGTGGCCATTGATCTGAGCCCCGCTTATCAGAAGGGAGCGGCGGAGCACTTCCCCGCAGCGCAAGTGGTCTTTGACC
GCTTCCACGTCATGAAGCTGGCCCAGGAGGCCACCGATGCGGTGCGCAAGCAACTGCATCGCATGGGTGCCGATGTCAAAGGGGGGCTGTGGGCCTTGAG
GGGCAATTGGGAGGGGCTCAAAGCCTCGCAGAAGCAGTTGCGAGACGAGTTGTGCGCCCGGTACAAGGAAATTGGCCGTGCCCTTGCGCTGCGTGAGCAC
CTGCAGGAGACATGGGAGTGGCCAGGGGTCTTCATGGCAGAGCATCATCTCAAGCGATGGTGTCAGTGGGCAGACCGGAGCCGGCTGGAGTCGTTCCGCA
AGTTGTCACGCACGATCAAAAAGCACTGGGCGGGAATCCTTGCGTACTACCCCAACCGGGTTACGTCGGCGGCGATTGAAGCCATCAACGGGATCCTTCA
AACCGCCCGCCGGCGGGCAAGGGGCTTTCGCAACTTTGCCAACTTCCAAGCCATTGCGTACTGGATGGCAGGAGATCTGGACTTGAAGCTCCGGCCCGCA
TTTACCCACCCATAACAGCGAAGAGCC
CTGACGGCACCTTGGAAGGTCATCGGCAGTGGTCTGGAGCGCGATCAGAGCGGCAAGATGTTCCTGTGCCTGGAGATTGAGGTGCAGTCCGGTGCGAAGT
TGCCCTGTCCCTGCTGTAGCAAGCTTTGCACGTCCTATGATCACGAGTTGAAGCGCTGGCGGCATTTGAACTTCTGGCAGCATGCCACTTACTTGAGTGC
GAGGGTGCCGCGGGTGGATTGTCCTGAACACGGGGTGAGGCAGGTGGAGGTTCCTTGGGCGCGAGCGGGCAGCGGCTTTACGCTGATGTTTGAAGCGCTG
GTGATGGCCCTGTCCCGAGAGATGCCCGTCAGCGCGGTGGCCGGTCTGGTGGGAGAGACCGACACCCGGTTGTGGCGGGTGGTGCATCACTATGTGGGAC
AGGCCCATGCTTCCCAAGACTGGAGCGAGGTCCATGTTCTGGCCATTGATGAGACTGCCACGCGCAAAGGCCACCGCTATGCCACAGTGGCGGTTGATCT
TCGACCTGAGACAGGAGCCTCAGCACGCTTGTTGTTCATGACCCCGGGGCGCAGTGGCGAGTGTGTCGAGCTGGTGGCTCAAGCCATGCCCGCGCATGGG
GCGCAGCCAAGCCAGGTCAAAGTGGTGGCCATTGATCTGAGCCCCGCTTATCAGAAGGGAGCGGCGGAGCACTTCCCCGCAGCGCAAGTGGTCTTTGACC
GCTTCCACGTCATGAAGCTGGCCCAGGAGGCCACCGATGCGGTGCGCAAGCAACTGCATCGCATGGGTGCCGATGTCAAAGGGGGGCTGTGGGCCTTGAG
GGGCAATTGGGAGGGGCTCAAAGCCTCGCAGAAGCAGTTGCGAGACGAGTTGTGCGCCCGGTACAAGGAAATTGGCCGTGCCCTTGCGCTGCGTGAGCAC
CTGCAGGAGACATGGGAGTGGCCAGGGGTCTTCATGGCAGAGCATCATCTCAAGCGATGGTGTCAGTGGGCAGACCGGAGCCGGCTGGAGTCGTTCCGCA
AGTTGTCACGCACGATCAAAAAGCACTGGGCGGGAATCCTTGCGTACTACCCCAACCGGGTTACGTCGGCGGCGATTGAAGCCATCAACGGGATCCTTCA
AACCGCCCGCCGGCGGGCAAGGGGCTTTCGCAACTTTGCCAACTTCCAAGCCATTGCGTACTGGATGGCAGGAGATCTGGACTTGAAGCTCCGGCCCGCA
TTTACCCACCCATAACAGCGAAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1251 bp | 416 aa | 65 | 1315 | + | No |
Chemistry : Unknow
ORF sequence :
MDQNSLFEAALGLTAPWKVIGSGLERDQSGKMFLCLEIEVQSGAKLPCPCCSKLCTSYDHELKRWRHLNFWQHATYLSARVPRVDCPEHGVRQVEVPWAR
AGSGFTLMFEALVMALSREMPVSAVAGLVGETDTRLWRVVHHYVGQAHASQDWSEVHVLAIDETATRKGHRYATVAVDLRPETGASARLLFMTPGRSGEC
VELVAQAMPAHGAQPSQVKVVAIDLSPAYQKGAAEHFPAAQVVFDRFHVMKLAQEATDAVRKQLHRMGADVKGGLWALRGNWEGLKASQKQLRDELCARY
KEIGRALALREHLQETWEWPGVFMAEHHLKRWCQWADRSRLESFRKLSRTIKKHWAGILAYYPNRVTSAAIEAINGILQTARRRARGFRNFANFQAIAYW
MAGDLDLKLRPAFTHP
AGSGFTLMFEALVMALSREMPVSAVAGLVGETDTRLWRVVHHYVGQAHASQDWSEVHVLAIDETATRKGHRYATVAVDLRPETGASARLLFMTPGRSGEC
VELVAQAMPAHGAQPSQVKVVAIDLSPAYQKGAAEHFPAAQVVFDRFHVMKLAQEATDAVRKQLHRMGADVKGGLWALRGNWEGLKASQKQLRDELCARY
KEIGRALALREHLQETWEWPGVFMAEHHLKRWCQWADRSRLESFRKLSRTIKKHWAGILAYYPNRVTSAAIEAINGILQTARRRARGFRNFANFQAIAYW
MAGDLDLKLRPAFTHP
Blast result :
Comments
ISVsp17 is 59% aa similar to ISAtc2.
There is 1 copy of ISVsp17 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There is 1 copy of ISVsp17 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1] DeBoy, R. (2010) Direct submission