ISVsp17

  • Family ISL3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1327 bp

Ends


IR Length : 20/25

IRL : GGCGCTTCGCTGAATTGAGTGGGTAGATTCTGGTCTTTTGTGGGGATTTT
IRR : GGCTCTTCGCTGTTATGGGTGGGTAAATGCGGGCCGGAGCTTCAAGTCCA

Insertion site


Left flankDirect repeatRight flankDR Length
CCCTTTTTCAATTTTTTGTCATGGTCGA8

DNA sequence

GGCGCTTCGCTGAATTGAGTGGGTAGATTCTGGTCTTTTGTGGGGATTTTGCTAGAGGATAGGCATGGATCAGAACAGCTTGTTTGAGGCAGCATTGGGG
CTGACGGCACCTTGGAAGGTCATCGGCAGTGGTCTGGAGCGCGATCAGAGCGGCAAGATGTTCCTGTGCCTGGAGATTGAGGTGCAGTCCGGTGCGAAGT
TGCCCTGTCCCTGCTGTAGCAAGCTTTGCACGTCCTATGATCACGAGTTGAAGCGCTGGCGGCATTTGAACTTCTGGCAGCATGCCACTTACTTGAGTGC
GAGGGTGCCGCGGGTGGATTGTCCTGAACACGGGGTGAGGCAGGTGGAGGTTCCTTGGGCGCGAGCGGGCAGCGGCTTTACGCTGATGTTTGAAGCGCTG
GTGATGGCCCTGTCCCGAGAGATGCCCGTCAGCGCGGTGGCCGGTCTGGTGGGAGAGACCGACACCCGGTTGTGGCGGGTGGTGCATCACTATGTGGGAC
AGGCCCATGCTTCCCAAGACTGGAGCGAGGTCCATGTTCTGGCCATTGATGAGACTGCCACGCGCAAAGGCCACCGCTATGCCACAGTGGCGGTTGATCT
TCGACCTGAGACAGGAGCCTCAGCACGCTTGTTGTTCATGACCCCGGGGCGCAGTGGCGAGTGTGTCGAGCTGGTGGCTCAAGCCATGCCCGCGCATGGG
GCGCAGCCAAGCCAGGTCAAAGTGGTGGCCATTGATCTGAGCCCCGCTTATCAGAAGGGAGCGGCGGAGCACTTCCCCGCAGCGCAAGTGGTCTTTGACC
GCTTCCACGTCATGAAGCTGGCCCAGGAGGCCACCGATGCGGTGCGCAAGCAACTGCATCGCATGGGTGCCGATGTCAAAGGGGGGCTGTGGGCCTTGAG
GGGCAATTGGGAGGGGCTCAAAGCCTCGCAGAAGCAGTTGCGAGACGAGTTGTGCGCCCGGTACAAGGAAATTGGCCGTGCCCTTGCGCTGCGTGAGCAC
CTGCAGGAGACATGGGAGTGGCCAGGGGTCTTCATGGCAGAGCATCATCTCAAGCGATGGTGTCAGTGGGCAGACCGGAGCCGGCTGGAGTCGTTCCGCA
AGTTGTCACGCACGATCAAAAAGCACTGGGCGGGAATCCTTGCGTACTACCCCAACCGGGTTACGTCGGCGGCGATTGAAGCCATCAACGGGATCCTTCA
AACCGCCCGCCGGCGGGCAAGGGGCTTTCGCAACTTTGCCAACTTCCAAGCCATTGCGTACTGGATGGCAGGAGATCTGGACTTGAAGCTCCGGCCCGCA
TTTACCCACCCATAACAGCGAAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1251 bp416 aa651315+No
ORF function : Transposase
Chemistry : Unknow

ORF sequence :

MDQNSLFEAALGLTAPWKVIGSGLERDQSGKMFLCLEIEVQSGAKLPCPCCSKLCTSYDHELKRWRHLNFWQHATYLSARVPRVDCPEHGVRQVEVPWAR
AGSGFTLMFEALVMALSREMPVSAVAGLVGETDTRLWRVVHHYVGQAHASQDWSEVHVLAIDETATRKGHRYATVAVDLRPETGASARLLFMTPGRSGEC
VELVAQAMPAHGAQPSQVKVVAIDLSPAYQKGAAEHFPAAQVVFDRFHVMKLAQEATDAVRKQLHRMGADVKGGLWALRGNWEGLKASQKQLRDELCARY
KEIGRALALREHLQETWEWPGVFMAEHHLKRWCQWADRSRLESFRKLSRTIKKHWAGILAYYPNRVTSAAIEAINGILQTARRRARGFRNFANFQAIAYW
MAGDLDLKLRPAFTHP

 

Blast result :
Comments
ISVsp17 is 59% aa similar to ISAtc2.
There is 1 copy of ISVsp17 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1] DeBoy, R. (2010) Direct submission