ISVsp16

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1579 bp

Ends


IR Length : 12

IRL : CAGCCTGTCGGACTTTGAAAATGCGATTGGGCTGTGTTAGGTAGAGCGAT
IRR : CAGCCTGTCGGATTTGCTGGATGCTGCAGGAGTGCGATCGGGGAACCGGA

Insertion site


Left flankDirect repeatRight flankDR Length
GGGGGCTTCCCTAGTGCGGGGCGA4
ATCATTTCCACTAGAAAGGCGGCA4

DNA sequence

CAGCCTGTCGGACTTTGAAAATGCGATTGGGCTGTGTTAGGTAGAGCGATGGCGAGCCGGTTTGTAGTCATTGATCACGACACCCCTCTGTTGCTGCCTC
CTGACCTGAGGGACTGGCTTCCCGAGGACCATCTGGTGCATTTTATCATGGATGCGGTCAAACTGCTGGATCTGTGCCAGGCCAGGGTCAACACCCGGGG
CACAGGTTACGCCCAGTACCCTCCTGGCATGATGCTGGGGCTGCTGATCTATTGCTATGCCACGGGCACCTTCAGCAGCCGCAAGATCGAGACGCTCACT
TATGAGAGCGTGGCGGTGCGTTATCTGTGTGCGGACACCCACCCCGATCACGACAGCATCTGCAAGTTCCGGCGTGAGAACAAGGAGCTGCTGGAAAGCA
GTTTTCATCAGGTGCTGGAGTGTGCCGCACGGCTCAACGTGCTGCAAGTGGGGCAGGTGGTGTTGTCGGTGGATGGCACCAAGATTTTGGCCAGCGCCAG
CAAGCACAGCGCCGTGAGCCATGGGCACGCCCAGCAGCAGTTGCTGCTGCTGGAGGAGCAGATCAAAGAGCTCACGGCCAAAGCCGAGGCCGCAGACAGC
ACGCCGTTGCGCGAGGGGCTGAGTCTGCCTGAGGAGATCCGGCGGCGTCAGAAGCGGCAGGAAAAGCTGCGGGAGGCAGTGCAGGTCATCGAGCAAAGAG
CTCGTGAGCGGCATCAGCAGGAGCAGGCGGCCTATGAACGCAAGCTTCAGGAGCGCCAGGACCGGGAACAAGCGCGGGGCAAAAAGACCGGAGGCAAGGC
CCCTCAACCACCCAAGGAAGGGCCTCAAGCCAAAGACCAGTACAACTTTACCGATCCACAGAGCCGGATCATGAAACACGGCGGTGGGGAGCACTTTGAG
CAAAGTTACAATGCGCAAGCGGCCGTTGAGGTGCAAAGCCGCCTTGTGGTGAGCCAGCTGGTCAGCGATGCGCCCAACGACAAGGAGCAGCTGGTGCCGG
TGCTGGAAAACAAAAGCCCCGTTGTGCAGAGCCTCAGCGTGGTGCTGGTGGACAGCGGTTACTACAGTGAGGCGGCGATCCGACAGGTGGAGGTGCCTGA
TGCAGACACCGGGGTGAGTCCGCAGGTGTATGCGGCGACGCGACGGCACAAGCACGGGCGTAGTGTCAAGGACCTTGAGCAGCATGACGATCCGCCGCCA
CCACCGCCCGGAGCGCCGGTCAAAGCGATCATGGAGCAGCGGTTGGAAACCCAGGAGGGCAAAGCCCTCTACGGGTTGCGCAAGCAGACGGTGGAACCTG
TGTTTGGCATCATCAAATCTGCGATGGGCTTTCGTCGGTTCAGCCTGCGCGGGCTCACGAAAGTGGGGCTGGAGTGGACGCTGGTCACGCTCAGTTACAA
TCTCAAGCGTCTGTATCACCTTGGGACAAGGCTCCCAGCCTGAAGAAAGCGGCTCAAGCGAGCTCAGCGGCGGGAAATGCAACGACACGGCTGGCTCCAA
CCGCGCCTCATCCATCTGACACGACGACTCCGGTTCCCCGATCGCACTCCTGCAGCATCCAGCAAATCCGACAGGCTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1395 bp464 aa491443+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MASRFVVIDHDTPLLLPPDLRDWLPEDHLVHFIMDAVKLLDLCQARVNTRGTGYAQYPPGMMLGLLIYCYATGTFSSRKIETLTYESVAVRYLCADTHPD
HDSICKFRRENKELLESSFHQVLECAARLNVLQVGQVVLSVDGTKILASASKHSAVSHGHAQQQLLLLEEQIKELTAKAEAADSTPLREGLSLPEEIRRR
QKRQEKLREAVQVIEQRARERHQQEQAAYERKLQERQDREQARGKKTGGKAPQPPKEGPQAKDQYNFTDPQSRIMKHGGGEHFEQSYNAQAAVEVQSRLV
VSQLVSDAPNDKEQLVPVLENKSPVVQSLSVVLVDSGYYSEAAIRQVEVPDADTGVSPQVYAATRRHKHGRSVKDLEQHDDPPPPPPGAPVKAIMEQRLE
TQEGKALYGLRKQTVEPVFGIIKSAMGFRRFSLRGLTKVGLEWTLVTLSYNLKRLYHLGTRLPA

 

Blast result :
Comments
ISVsp16 is 62% aa similar to ISThsp16.
There are 2 copies of ISVsp16 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission