ISVsp16
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1579 bp
Ends
IR Length : 12
IRL : CAGCCTGTCGGACTTTGAAAATGCGATTGGGCTGTGTTAGGTAGAGCGAT
IRR : CAGCCTGTCGGATTTGCTGGATGCTGCAGGAGTGCGATCGGGGAACCGGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGGGGCTTCC | CTAG | TGCGGGGCGA | 4 |
ATCATTTCCA | CTAG | AAAGGCGGCA | 4 |
DNA sequence
CAGCCTGTCGGACTTTGAAAATGCGATTGGGCTGTGTTAGGTAGAGCGATGGCGAGCCGGTTTGTAGTCATTGATCACGACACCCCTCTGTTGCTGCCTC
CTGACCTGAGGGACTGGCTTCCCGAGGACCATCTGGTGCATTTTATCATGGATGCGGTCAAACTGCTGGATCTGTGCCAGGCCAGGGTCAACACCCGGGG
CACAGGTTACGCCCAGTACCCTCCTGGCATGATGCTGGGGCTGCTGATCTATTGCTATGCCACGGGCACCTTCAGCAGCCGCAAGATCGAGACGCTCACT
TATGAGAGCGTGGCGGTGCGTTATCTGTGTGCGGACACCCACCCCGATCACGACAGCATCTGCAAGTTCCGGCGTGAGAACAAGGAGCTGCTGGAAAGCA
GTTTTCATCAGGTGCTGGAGTGTGCCGCACGGCTCAACGTGCTGCAAGTGGGGCAGGTGGTGTTGTCGGTGGATGGCACCAAGATTTTGGCCAGCGCCAG
CAAGCACAGCGCCGTGAGCCATGGGCACGCCCAGCAGCAGTTGCTGCTGCTGGAGGAGCAGATCAAAGAGCTCACGGCCAAAGCCGAGGCCGCAGACAGC
ACGCCGTTGCGCGAGGGGCTGAGTCTGCCTGAGGAGATCCGGCGGCGTCAGAAGCGGCAGGAAAAGCTGCGGGAGGCAGTGCAGGTCATCGAGCAAAGAG
CTCGTGAGCGGCATCAGCAGGAGCAGGCGGCCTATGAACGCAAGCTTCAGGAGCGCCAGGACCGGGAACAAGCGCGGGGCAAAAAGACCGGAGGCAAGGC
CCCTCAACCACCCAAGGAAGGGCCTCAAGCCAAAGACCAGTACAACTTTACCGATCCACAGAGCCGGATCATGAAACACGGCGGTGGGGAGCACTTTGAG
CAAAGTTACAATGCGCAAGCGGCCGTTGAGGTGCAAAGCCGCCTTGTGGTGAGCCAGCTGGTCAGCGATGCGCCCAACGACAAGGAGCAGCTGGTGCCGG
TGCTGGAAAACAAAAGCCCCGTTGTGCAGAGCCTCAGCGTGGTGCTGGTGGACAGCGGTTACTACAGTGAGGCGGCGATCCGACAGGTGGAGGTGCCTGA
TGCAGACACCGGGGTGAGTCCGCAGGTGTATGCGGCGACGCGACGGCACAAGCACGGGCGTAGTGTCAAGGACCTTGAGCAGCATGACGATCCGCCGCCA
CCACCGCCCGGAGCGCCGGTCAAAGCGATCATGGAGCAGCGGTTGGAAACCCAGGAGGGCAAAGCCCTCTACGGGTTGCGCAAGCAGACGGTGGAACCTG
TGTTTGGCATCATCAAATCTGCGATGGGCTTTCGTCGGTTCAGCCTGCGCGGGCTCACGAAAGTGGGGCTGGAGTGGACGCTGGTCACGCTCAGTTACAA
TCTCAAGCGTCTGTATCACCTTGGGACAAGGCTCCCAGCCTGAAGAAAGCGGCTCAAGCGAGCTCAGCGGCGGGAAATGCAACGACACGGCTGGCTCCAA
CCGCGCCTCATCCATCTGACACGACGACTCCGGTTCCCCGATCGCACTCCTGCAGCATCCAGCAAATCCGACAGGCTG
CTGACCTGAGGGACTGGCTTCCCGAGGACCATCTGGTGCATTTTATCATGGATGCGGTCAAACTGCTGGATCTGTGCCAGGCCAGGGTCAACACCCGGGG
CACAGGTTACGCCCAGTACCCTCCTGGCATGATGCTGGGGCTGCTGATCTATTGCTATGCCACGGGCACCTTCAGCAGCCGCAAGATCGAGACGCTCACT
TATGAGAGCGTGGCGGTGCGTTATCTGTGTGCGGACACCCACCCCGATCACGACAGCATCTGCAAGTTCCGGCGTGAGAACAAGGAGCTGCTGGAAAGCA
GTTTTCATCAGGTGCTGGAGTGTGCCGCACGGCTCAACGTGCTGCAAGTGGGGCAGGTGGTGTTGTCGGTGGATGGCACCAAGATTTTGGCCAGCGCCAG
CAAGCACAGCGCCGTGAGCCATGGGCACGCCCAGCAGCAGTTGCTGCTGCTGGAGGAGCAGATCAAAGAGCTCACGGCCAAAGCCGAGGCCGCAGACAGC
ACGCCGTTGCGCGAGGGGCTGAGTCTGCCTGAGGAGATCCGGCGGCGTCAGAAGCGGCAGGAAAAGCTGCGGGAGGCAGTGCAGGTCATCGAGCAAAGAG
CTCGTGAGCGGCATCAGCAGGAGCAGGCGGCCTATGAACGCAAGCTTCAGGAGCGCCAGGACCGGGAACAAGCGCGGGGCAAAAAGACCGGAGGCAAGGC
CCCTCAACCACCCAAGGAAGGGCCTCAAGCCAAAGACCAGTACAACTTTACCGATCCACAGAGCCGGATCATGAAACACGGCGGTGGGGAGCACTTTGAG
CAAAGTTACAATGCGCAAGCGGCCGTTGAGGTGCAAAGCCGCCTTGTGGTGAGCCAGCTGGTCAGCGATGCGCCCAACGACAAGGAGCAGCTGGTGCCGG
TGCTGGAAAACAAAAGCCCCGTTGTGCAGAGCCTCAGCGTGGTGCTGGTGGACAGCGGTTACTACAGTGAGGCGGCGATCCGACAGGTGGAGGTGCCTGA
TGCAGACACCGGGGTGAGTCCGCAGGTGTATGCGGCGACGCGACGGCACAAGCACGGGCGTAGTGTCAAGGACCTTGAGCAGCATGACGATCCGCCGCCA
CCACCGCCCGGAGCGCCGGTCAAAGCGATCATGGAGCAGCGGTTGGAAACCCAGGAGGGCAAAGCCCTCTACGGGTTGCGCAAGCAGACGGTGGAACCTG
TGTTTGGCATCATCAAATCTGCGATGGGCTTTCGTCGGTTCAGCCTGCGCGGGCTCACGAAAGTGGGGCTGGAGTGGACGCTGGTCACGCTCAGTTACAA
TCTCAAGCGTCTGTATCACCTTGGGACAAGGCTCCCAGCCTGAAGAAAGCGGCTCAAGCGAGCTCAGCGGCGGGAAATGCAACGACACGGCTGGCTCCAA
CCGCGCCTCATCCATCTGACACGACGACTCCGGTTCCCCGATCGCACTCCTGCAGCATCCAGCAAATCCGACAGGCTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1395 bp | 464 aa | 49 | 1443 | + | No |
Chemistry : DDE
ORF sequence :
MASRFVVIDHDTPLLLPPDLRDWLPEDHLVHFIMDAVKLLDLCQARVNTRGTGYAQYPPGMMLGLLIYCYATGTFSSRKIETLTYESVAVRYLCADTHPD
HDSICKFRRENKELLESSFHQVLECAARLNVLQVGQVVLSVDGTKILASASKHSAVSHGHAQQQLLLLEEQIKELTAKAEAADSTPLREGLSLPEEIRRR
QKRQEKLREAVQVIEQRARERHQQEQAAYERKLQERQDREQARGKKTGGKAPQPPKEGPQAKDQYNFTDPQSRIMKHGGGEHFEQSYNAQAAVEVQSRLV
VSQLVSDAPNDKEQLVPVLENKSPVVQSLSVVLVDSGYYSEAAIRQVEVPDADTGVSPQVYAATRRHKHGRSVKDLEQHDDPPPPPPGAPVKAIMEQRLE
TQEGKALYGLRKQTVEPVFGIIKSAMGFRRFSLRGLTKVGLEWTLVTLSYNLKRLYHLGTRLPA
HDSICKFRRENKELLESSFHQVLECAARLNVLQVGQVVLSVDGTKILASASKHSAVSHGHAQQQLLLLEEQIKELTAKAEAADSTPLREGLSLPEEIRRR
QKRQEKLREAVQVIEQRARERHQQEQAAYERKLQERQDREQARGKKTGGKAPQPPKEGPQAKDQYNFTDPQSRIMKHGGGEHFEQSYNAQAAVEVQSRLV
VSQLVSDAPNDKEQLVPVLENKSPVVQSLSVVLVDSGYYSEAAIRQVEVPDADTGVSPQVYAATRRHKHGRSVKDLEQHDDPPPPPPGAPVKAIMEQRLE
TQEGKALYGLRKQTVEPVFGIIKSAMGFRRFSLRGLTKVGLEWTLVTLSYNLKRLYHLGTRLPA
Blast result :
Comments
ISVsp16 is 62% aa similar to ISThsp16.
There are 2 copies of ISVsp16 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There are 2 copies of ISVsp16 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission