ISVsp15
- Family ISL3
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1302 bp
Ends
IR Length : 22/28
IRL : GGCTCTTCGTAAAAGCCCGTGGGATTTTTGGTTGGGCTGGATAGATTGCG
IRR : GGTTCTTCGTTAGTTTCCGTGGGATTTTGACAAGGCGGGGAGCATGTCGA
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CCAGCACCCG | AATAAATT | CTTGCTTATC | 8 |
DNA sequence
GGCTCTTCGTAAAAGCCCGTGGGATTTTTGGTTGGGCTGGATAGATTGCGCCTCATGCAGGACACAGAGTTTTATGAGCGGTTGCTGGGCTTGAGCAAGC
CTTGGAAGGTGACGGATGTCGACATGGACATAGCCGCTGGTGAAGTCCGGGTGAAGGTGACTTGCAATACCACTGTTTGGGTGGGGGATGCGGGACAACG
TCTCCATGTTCACGGCCACGAACAGCGTCGCTGGCGGCATTTGGACACCTGCCAGTTTCGCACCATCATCGAAGCCTCGGTGCCCCGTGTGCTTGACCCT
GCCGATGGCAAAACACAGATGGTGCAGGTTCCCTGGGCGGGGCCACGCAGCGGATGGACCCTCATGTTTGAGCACTTTGTCGTCCGGGTCCTGCTAGCTT
GCACCACTCTCAGTGATGCTCTGCGTCTTACCGGGCTGGAGTGGCACCAGGCTCAAGGGATCATGAGCAGAGCCGTTGAGCGTGGCCTGCAAAGGCGCAA
GCTGGAGCAGGTTGACTATGTGGGGCTGGACGAGAAGAGCTTTCGGCGGGGGCAGGACTACATCTCTGTGATGACTGACCTTGTGGCTCAGCGGGTGCTG
GAGGTGCAACCCGGACGGGACACCGCCGCAGTGCTGAAGCTTTGGGAACTGTTGCCCGAAAACACCCGACAGCAGGTGCAAGCGGCGGCCATGGACTTTG
GAGCGGCCTATGCAGCGGCAACGCGCCAGGCGGTGCCGCATGCGCTCATTGTCTATGACAAGTTCCATGTGAGCCAGATGTTGAGCAAGGCGGTGGACAC
CGTGCGACGTCAGGAACACAAGATCTTGATGGGACAGGGTGATGACACGCTCAAAGGCTCCAGATATGTCTGGCTGCGTGGACTTGAAAAGATGAGCGAC
GCGGAGTTTTTGAACTTCCAGCAACTGGTGGAACTCTCGTTGAAGACCTCGCGGGCGTGGGAGCACAAGGAGCTGTTTGCGGCCTTCTGGGAACAGCGCA
CTGCCGCAGAAGGGGCCAAGTTCTTTGCCCGATGGTTGAAGCGGGTCATGAGTTCACGTCTTGAGCCCGTCAAGAAAGCAGCGCGCACGTTGAAGACGCA
CCTACAGGGGTTGCTCAACTACTTTACCCACCCCATCACCAACGCGCTGACAGAAGGGCTCAACAGCCGCATTCAACTGCTCAAGGCGTCGGCACGGGGC
TTTCGCAACTTCGACAACTACCGCATACGCATCCTGTTCTTCCTCGGCGGGCTCGACATGCTCCCCGCCTTGTCAAAATCCCACGGAAACTAACGAAGAA
CC
CTTGGAAGGTGACGGATGTCGACATGGACATAGCCGCTGGTGAAGTCCGGGTGAAGGTGACTTGCAATACCACTGTTTGGGTGGGGGATGCGGGACAACG
TCTCCATGTTCACGGCCACGAACAGCGTCGCTGGCGGCATTTGGACACCTGCCAGTTTCGCACCATCATCGAAGCCTCGGTGCCCCGTGTGCTTGACCCT
GCCGATGGCAAAACACAGATGGTGCAGGTTCCCTGGGCGGGGCCACGCAGCGGATGGACCCTCATGTTTGAGCACTTTGTCGTCCGGGTCCTGCTAGCTT
GCACCACTCTCAGTGATGCTCTGCGTCTTACCGGGCTGGAGTGGCACCAGGCTCAAGGGATCATGAGCAGAGCCGTTGAGCGTGGCCTGCAAAGGCGCAA
GCTGGAGCAGGTTGACTATGTGGGGCTGGACGAGAAGAGCTTTCGGCGGGGGCAGGACTACATCTCTGTGATGACTGACCTTGTGGCTCAGCGGGTGCTG
GAGGTGCAACCCGGACGGGACACCGCCGCAGTGCTGAAGCTTTGGGAACTGTTGCCCGAAAACACCCGACAGCAGGTGCAAGCGGCGGCCATGGACTTTG
GAGCGGCCTATGCAGCGGCAACGCGCCAGGCGGTGCCGCATGCGCTCATTGTCTATGACAAGTTCCATGTGAGCCAGATGTTGAGCAAGGCGGTGGACAC
CGTGCGACGTCAGGAACACAAGATCTTGATGGGACAGGGTGATGACACGCTCAAAGGCTCCAGATATGTCTGGCTGCGTGGACTTGAAAAGATGAGCGAC
GCGGAGTTTTTGAACTTCCAGCAACTGGTGGAACTCTCGTTGAAGACCTCGCGGGCGTGGGAGCACAAGGAGCTGTTTGCGGCCTTCTGGGAACAGCGCA
CTGCCGCAGAAGGGGCCAAGTTCTTTGCCCGATGGTTGAAGCGGGTCATGAGTTCACGTCTTGAGCCCGTCAAGAAAGCAGCGCGCACGTTGAAGACGCA
CCTACAGGGGTTGCTCAACTACTTTACCCACCCCATCACCAACGCGCTGACAGAAGGGCTCAACAGCCGCATTCAACTGCTCAAGGCGTCGGCACGGGGC
TTTCGCAACTTCGACAACTACCGCATACGCATCCTGTTCTTCCTCGGCGGGCTCGACATGCTCCCCGCCTTGTCAAAATCCCACGGAAACTAACGAAGAA
CC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1239 bp | 412 aa | 55 | 1293 | + | No |
Chemistry : Unknow
ORF sequence :
MQDTEFYERLLGLSKPWKVTDVDMDIAAGEVRVKVTCNTTVWVGDAGQRLHVHGHEQRRWRHLDTCQFRTIIEASVPRVLDPADGKTQMVQVPWAGPRSG
WTLMFEHFVVRVLLACTTLSDALRLTGLEWHQAQGIMSRAVERGLQRRKLEQVDYVGLDEKSFRRGQDYISVMTDLVAQRVLEVQPGRDTAAVLKLWELL
PENTRQQVQAAAMDFGAAYAAATRQAVPHALIVYDKFHVSQMLSKAVDTVRRQEHKILMGQGDDTLKGSRYVWLRGLEKMSDAEFLNFQQLVELSLKTSR
AWEHKELFAAFWEQRTAAEGAKFFARWLKRVMSSRLEPVKKAARTLKTHLQGLLNYFTHPITNALTEGLNSRIQLLKASARGFRNFDNYRIRILFFLGGL
DMLPALSKSHGN
WTLMFEHFVVRVLLACTTLSDALRLTGLEWHQAQGIMSRAVERGLQRRKLEQVDYVGLDEKSFRRGQDYISVMTDLVAQRVLEVQPGRDTAAVLKLWELL
PENTRQQVQAAAMDFGAAYAAATRQAVPHALIVYDKFHVSQMLSKAVDTVRRQEHKILMGQGDDTLKGSRYVWLRGLEKMSDAEFLNFQQLVELSLKTSR
AWEHKELFAAFWEQRTAAEGAKFFARWLKRVMSSRLEPVKKAARTLKTHLQGLLNYFTHPITNALTEGLNSRIQLLKASARGFRNFDNYRIRILFFLGGL
DMLPALSKSHGN
Blast result :
Comments
ISVsp15 is 60% aa similar to ISCARN113.
There is 1 copy of ISVsp15 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There is 1 copy of ISVsp15 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1] DeBoy, R. (2010) Direct submission