ISVsp14
- Family IS4
- Group IS231
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1351 bp
Ends
IR Length : 17
IRL : CATAAGCGCTAACTTAACATAGACATGGTAGGATTTTTTGGCTAGCGTGC
IRR : CATAAGCGCTAACTTAAGAGGCTTTGAACACGCGGCATTCTTTTTCGCTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCTATCCCTG | GGGCGCTGCCC | CAGGCTGGTA | 11 |
TACCAGCCTG | GGGCAACGCCC | CAGGGATAGA | 11 |
DNA sequence
CATAAGCGCTAACTTAACATAGACATGGTAGGATTTTTTGGCTAGCGTGCGGCATGCCCTCCTTGCCCGATGAGAACTGGGATTACCTTTTGAGTCTGCT
TCCGGAGAATTGGGAGTCATTGGCCAAGACGACCGGGGCCGTCCAGCGCCTGCGTGGCGCGGAGTCTTTGAGCAGTCTGTTGCGTGTTTTACTGCTGCAT
GCAGGTCACGGCTGTTCTTTGCGCACTGCTTCTGTGGTAGGCAAGGCAGCAGGCTGGATCAGCATGTCTGATGTGGCCCTGCACAAGAGGTTTGCTCTGT
GCGAGGGGTGGCTGCAGCAGCTTTGCGCAGGGCTTTTTGCCCAAAGTCGGTTGCAACTGCCGGCGGCTTACCGCGGCTTGAAGCTGCGCTTGGTGGATGG
CACGACCATCAAGGAGCCCGGCGCCACGGGCAGTCAATGGCGCATCCACTACAGCTTGCGAGTGCCTGATTGGCATTGTGACTTTTTCCGTCTCAATCCA
GTCAGGGGCTCTGGCAATGGCGAATCGCTCAAGCATTTTGAAGTTGCCCCTGGAGACTGCTTCTTGGCAGACCGCGGCTTTAGCCACCTGTTGGGGATCG
AGCATGTCTATCGGGGCGGGGCGCATGTGATCATGCGGCTTAACGAACAAAACACCCCATTGGAAGATGAGCAGGGACGTCCAGTTGTCCTGCTGCCCTG
GCTCCGCAAGCTCAAGCAGCCGGGAGCGGCGGCGGGCCTGGATCTTTGGGTGCGCCCACGTAAGGAGGACTCCTTGGAAAAGCGTGTGCCAGTGCGTCTG
TGCGCCGTGCGCAAAAGCGTGGAAGCTGCCGCTTTGGCACAACGCAAAGTGCAGCGACGCGCTCAACAAGATCAGACCAAACTGCGCGCAGCCACCTTGG
AGCACACGGCTTGGATCGTGGTGCTGACCACCGTGCCAAGGGACACGCTGAGCGATGTAGAGGTGCTTCAATGGTATCGGGTGCGCTGGCAAATTGAACT
GGCTTTCAAGAGGCTCAAATCACTGGGAGATGTCGGACACCTGCCCAAAAGTGATGAGCGATCCAGTCGAGCGTGGGTCTACGCCAAACTGCTCATTGCT
TTACTCAGTGAAAAGATGCAGCGCCACGCGGCGGCCCTTTCCCCCTGGGGAGGACGTTGGCTGGAGAATGAAACGCCCCCGCAGCCACTGGCGGGAGACT
GAGTGGCTCATTGAGTTGATCCAGGCGGCTACTTGGCCGCCGCTGCGAATCGCTGACTGTCTGAGTTCCTGGAATCAGATCGCTCAAGACTCGCCGAACG
AAAGCGAAAAAGAATGCCGCGTGTTCAAAGCCTCTTAAGTTAGCGCTTATG
TCCGGAGAATTGGGAGTCATTGGCCAAGACGACCGGGGCCGTCCAGCGCCTGCGTGGCGCGGAGTCTTTGAGCAGTCTGTTGCGTGTTTTACTGCTGCAT
GCAGGTCACGGCTGTTCTTTGCGCACTGCTTCTGTGGTAGGCAAGGCAGCAGGCTGGATCAGCATGTCTGATGTGGCCCTGCACAAGAGGTTTGCTCTGT
GCGAGGGGTGGCTGCAGCAGCTTTGCGCAGGGCTTTTTGCCCAAAGTCGGTTGCAACTGCCGGCGGCTTACCGCGGCTTGAAGCTGCGCTTGGTGGATGG
CACGACCATCAAGGAGCCCGGCGCCACGGGCAGTCAATGGCGCATCCACTACAGCTTGCGAGTGCCTGATTGGCATTGTGACTTTTTCCGTCTCAATCCA
GTCAGGGGCTCTGGCAATGGCGAATCGCTCAAGCATTTTGAAGTTGCCCCTGGAGACTGCTTCTTGGCAGACCGCGGCTTTAGCCACCTGTTGGGGATCG
AGCATGTCTATCGGGGCGGGGCGCATGTGATCATGCGGCTTAACGAACAAAACACCCCATTGGAAGATGAGCAGGGACGTCCAGTTGTCCTGCTGCCCTG
GCTCCGCAAGCTCAAGCAGCCGGGAGCGGCGGCGGGCCTGGATCTTTGGGTGCGCCCACGTAAGGAGGACTCCTTGGAAAAGCGTGTGCCAGTGCGTCTG
TGCGCCGTGCGCAAAAGCGTGGAAGCTGCCGCTTTGGCACAACGCAAAGTGCAGCGACGCGCTCAACAAGATCAGACCAAACTGCGCGCAGCCACCTTGG
AGCACACGGCTTGGATCGTGGTGCTGACCACCGTGCCAAGGGACACGCTGAGCGATGTAGAGGTGCTTCAATGGTATCGGGTGCGCTGGCAAATTGAACT
GGCTTTCAAGAGGCTCAAATCACTGGGAGATGTCGGACACCTGCCCAAAAGTGATGAGCGATCCAGTCGAGCGTGGGTCTACGCCAAACTGCTCATTGCT
TTACTCAGTGAAAAGATGCAGCGCCACGCGGCGGCCCTTTCCCCCTGGGGAGGACGTTGGCTGGAGAATGAAACGCCCCCGCAGCCACTGGCGGGAGACT
GAGTGGCTCATTGAGTTGATCCAGGCGGCTACTTGGCCGCCGCTGCGAATCGCTGACTGTCTGAGTTCCTGGAATCAGATCGCTCAAGACTCGCCGAACG
AAAGCGAAAAAGAATGCCGCGTGTTCAAAGCCTCTTAAGTTAGCGCTTATG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1149 bp | 382 aa | 54 | 1202 | + | No |
Chemistry : DDE
ORF sequence :
MPSLPDENWDYLLSLLPENWESLAKTTGAVQRLRGAESLSSLLRVLLLHAGHGCSLRTASVVGKAAGWISMSDVALHKRFALCEGWLQQLCAGLFAQSRL
QLPAAYRGLKLRLVDGTTIKEPGATGSQWRIHYSLRVPDWHCDFFRLNPVRGSGNGESLKHFEVAPGDCFLADRGFSHLLGIEHVYRGGAHVIMRLNEQN
TPLEDEQGRPVVLLPWLRKLKQPGAAAGLDLWVRPRKEDSLEKRVPVRLCAVRKSVEAAALAQRKVQRRAQQDQTKLRAATLEHTAWIVVLTTVPRDTLS
DVEVLQWYRVRWQIELAFKRLKSLGDVGHLPKSDERSSRAWVYAKLLIALLSEKMQRHAAALSPWGGRWLENETPPQPLAGD
QLPAAYRGLKLRLVDGTTIKEPGATGSQWRIHYSLRVPDWHCDFFRLNPVRGSGNGESLKHFEVAPGDCFLADRGFSHLLGIEHVYRGGAHVIMRLNEQN
TPLEDEQGRPVVLLPWLRKLKQPGAAAGLDLWVRPRKEDSLEKRVPVRLCAVRKSVEAAALAQRKVQRRAQQDQTKLRAATLEHTAWIVVLTTVPRDTLS
DVEVLQWYRVRWQIELAFKRLKSLGDVGHLPKSDERSSRAWVYAKLLIALLSEKMQRHAAALSPWGGRWLENETPPQPLAGD
Blast result :
Comments
ISVsp14 is 61% aa similar to ISCku3.
References
1] DeBoy, R. (2010) Direct submission