ISVsp14

  • Family IS4
  • Group IS231
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1351 bp

Ends


IR Length : 17

IRL : CATAAGCGCTAACTTAACATAGACATGGTAGGATTTTTTGGCTAGCGTGC
IRR : CATAAGCGCTAACTTAAGAGGCTTTGAACACGCGGCATTCTTTTTCGCTT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTATCCCTGGGGCGCTGCCCCAGGCTGGTA11
TACCAGCCTGGGGCAACGCCCCAGGGATAGA11

DNA sequence

CATAAGCGCTAACTTAACATAGACATGGTAGGATTTTTTGGCTAGCGTGCGGCATGCCCTCCTTGCCCGATGAGAACTGGGATTACCTTTTGAGTCTGCT
TCCGGAGAATTGGGAGTCATTGGCCAAGACGACCGGGGCCGTCCAGCGCCTGCGTGGCGCGGAGTCTTTGAGCAGTCTGTTGCGTGTTTTACTGCTGCAT
GCAGGTCACGGCTGTTCTTTGCGCACTGCTTCTGTGGTAGGCAAGGCAGCAGGCTGGATCAGCATGTCTGATGTGGCCCTGCACAAGAGGTTTGCTCTGT
GCGAGGGGTGGCTGCAGCAGCTTTGCGCAGGGCTTTTTGCCCAAAGTCGGTTGCAACTGCCGGCGGCTTACCGCGGCTTGAAGCTGCGCTTGGTGGATGG
CACGACCATCAAGGAGCCCGGCGCCACGGGCAGTCAATGGCGCATCCACTACAGCTTGCGAGTGCCTGATTGGCATTGTGACTTTTTCCGTCTCAATCCA
GTCAGGGGCTCTGGCAATGGCGAATCGCTCAAGCATTTTGAAGTTGCCCCTGGAGACTGCTTCTTGGCAGACCGCGGCTTTAGCCACCTGTTGGGGATCG
AGCATGTCTATCGGGGCGGGGCGCATGTGATCATGCGGCTTAACGAACAAAACACCCCATTGGAAGATGAGCAGGGACGTCCAGTTGTCCTGCTGCCCTG
GCTCCGCAAGCTCAAGCAGCCGGGAGCGGCGGCGGGCCTGGATCTTTGGGTGCGCCCACGTAAGGAGGACTCCTTGGAAAAGCGTGTGCCAGTGCGTCTG
TGCGCCGTGCGCAAAAGCGTGGAAGCTGCCGCTTTGGCACAACGCAAAGTGCAGCGACGCGCTCAACAAGATCAGACCAAACTGCGCGCAGCCACCTTGG
AGCACACGGCTTGGATCGTGGTGCTGACCACCGTGCCAAGGGACACGCTGAGCGATGTAGAGGTGCTTCAATGGTATCGGGTGCGCTGGCAAATTGAACT
GGCTTTCAAGAGGCTCAAATCACTGGGAGATGTCGGACACCTGCCCAAAAGTGATGAGCGATCCAGTCGAGCGTGGGTCTACGCCAAACTGCTCATTGCT
TTACTCAGTGAAAAGATGCAGCGCCACGCGGCGGCCCTTTCCCCCTGGGGAGGACGTTGGCTGGAGAATGAAACGCCCCCGCAGCCACTGGCGGGAGACT
GAGTGGCTCATTGAGTTGATCCAGGCGGCTACTTGGCCGCCGCTGCGAATCGCTGACTGTCTGAGTTCCTGGAATCAGATCGCTCAAGACTCGCCGAACG
AAAGCGAAAAAGAATGCCGCGTGTTCAAAGCCTCTTAAGTTAGCGCTTATG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1149 bp382 aa541202+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MPSLPDENWDYLLSLLPENWESLAKTTGAVQRLRGAESLSSLLRVLLLHAGHGCSLRTASVVGKAAGWISMSDVALHKRFALCEGWLQQLCAGLFAQSRL
QLPAAYRGLKLRLVDGTTIKEPGATGSQWRIHYSLRVPDWHCDFFRLNPVRGSGNGESLKHFEVAPGDCFLADRGFSHLLGIEHVYRGGAHVIMRLNEQN
TPLEDEQGRPVVLLPWLRKLKQPGAAAGLDLWVRPRKEDSLEKRVPVRLCAVRKSVEAAALAQRKVQRRAQQDQTKLRAATLEHTAWIVVLTTVPRDTLS
DVEVLQWYRVRWQIELAFKRLKSLGDVGHLPKSDERSSRAWVYAKLLIALLSEKMQRHAAALSPWGGRWLENETPPQPLAGD

 

Blast result :
Comments
ISVsp14 is 61% aa similar to ISCku3.
References
1] DeBoy, R. (2010) Direct submission