ISVsp12
- Family IS630
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1125 bp
Ends
IR Length : 25/28
IRL : TACTTCTCTGCATGAAGATTTCGGATTCGGTTGTTATGTGGTTGCTAGTA
IRR : TACTTCTCTGCATTAAGAATTCGGGATTTCAAAGAGCTGGAAGTTTTCAG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTGCCGATAC | TA | TGACGCGTTG | 2 |
| GTCCCCAAAC | TA | CTTATTCTTC | 2 |
| ATCGGGCGAC | TA | GACGCTGCGG | 2 |
DNA sequence
TACTTCTCTGCATGAAGATTTCGGATTCGGTTGTTATGTGGTTGCTAGTAGGTTCGATGGAAGTACTATAGACACATGATCAAGATTGATTTGTGCAGCG
AAGACCTTGAAGCTATTGCCGAAGAACTCGACGATCCAGAGATTGACCTGCGGACCCGCCACCGGTTGATGACGGTGCGGCTGCATCATCTCAAGGTCCC
ACATCAGGCCATTGCCCAGGCGCTCAGCCTCTGCGAGGACACCGTCACCAACTATCTCAAGCTCTACCGTGATGGCGGGTTGGCCGGGCTCTTGGAGGAC
CGCTATTACAGGCCCACCAGCAGTGTTGCTCCATGGCTGGAGCACATTGCCAAGTCTTTTGAGCAAGATCCGGTCGCCACCTCAGGTGAAGGTGCTGCCA
GAATCGAGCAAATCAGCGGCATCCGGCTCTCCGACGCCCAGGCCAGGAGGATCATGATCGGCTTGGGCTTGAAGTTTCGCAAGACCGCCGCGGTGCCCGG
GGGAGCAGATGTGCAACTGCAATTTGAGTTCCTTCATGAAGAGTTGCTGCCCCGCCTGGACGAGGCTCAGCAGGGGCGAAGGCGGGTTTTTTTCGTTGAT
GCCGCCCATTTTGTGCTGGGTTCGTTTTTGGGCATGATCTGGTCTTTCACCCGGATCTTCGTACCCAGCGCCAGTGGGCGGCAACGTTACAACGTGCTGG
GAGCCGTGGAGACCCGCGATCATGATTTTGTCAGCATTCGCACCACGGACTCGATCAATGAGCAGGTGGTGTGTGACTTGATCACCAAGATATACGAAAC
CTATGGAAACGAGCCCATAACCCTGGTGATGGACAACGCTCGGTATCAAAGAAGCCGGCTGGTGGGGGAGGTGGCTGAAGGGCTTGGCATAGAGCTACTC
TACCTGCCACCCTACTCACCGAATTTGAATCTTATCGAGCGGGTGTGGCGACTGGTGAAGACTCGATGCTTGAGAAACAAGTACTTTGAGAGCTTTGCGC
TCTTCAGGGCGGCAATCGATGAGTATCTTGACTCACTGAGCGAAGCCAATCGCAGATATCTGCAATCCTTGGTAACTGAAAACTTCCAGCTCTTTGAAAT
CCCGAATTCTTAATGCAGAGAAGTA
AAGACCTTGAAGCTATTGCCGAAGAACTCGACGATCCAGAGATTGACCTGCGGACCCGCCACCGGTTGATGACGGTGCGGCTGCATCATCTCAAGGTCCC
ACATCAGGCCATTGCCCAGGCGCTCAGCCTCTGCGAGGACACCGTCACCAACTATCTCAAGCTCTACCGTGATGGCGGGTTGGCCGGGCTCTTGGAGGAC
CGCTATTACAGGCCCACCAGCAGTGTTGCTCCATGGCTGGAGCACATTGCCAAGTCTTTTGAGCAAGATCCGGTCGCCACCTCAGGTGAAGGTGCTGCCA
GAATCGAGCAAATCAGCGGCATCCGGCTCTCCGACGCCCAGGCCAGGAGGATCATGATCGGCTTGGGCTTGAAGTTTCGCAAGACCGCCGCGGTGCCCGG
GGGAGCAGATGTGCAACTGCAATTTGAGTTCCTTCATGAAGAGTTGCTGCCCCGCCTGGACGAGGCTCAGCAGGGGCGAAGGCGGGTTTTTTTCGTTGAT
GCCGCCCATTTTGTGCTGGGTTCGTTTTTGGGCATGATCTGGTCTTTCACCCGGATCTTCGTACCCAGCGCCAGTGGGCGGCAACGTTACAACGTGCTGG
GAGCCGTGGAGACCCGCGATCATGATTTTGTCAGCATTCGCACCACGGACTCGATCAATGAGCAGGTGGTGTGTGACTTGATCACCAAGATATACGAAAC
CTATGGAAACGAGCCCATAACCCTGGTGATGGACAACGCTCGGTATCAAAGAAGCCGGCTGGTGGGGGAGGTGGCTGAAGGGCTTGGCATAGAGCTACTC
TACCTGCCACCCTACTCACCGAATTTGAATCTTATCGAGCGGGTGTGGCGACTGGTGAAGACTCGATGCTTGAGAAACAAGTACTTTGAGAGCTTTGCGC
TCTTCAGGGCGGCAATCGATGAGTATCTTGACTCACTGAGCGAAGCCAATCGCAGATATCTGCAATCCTTGGTAACTGAAAACTTCCAGCTCTTTGAAAT
CCCGAATTCTTAATGCAGAGAAGTA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1038 bp | 345 aa | 76 | 1113 | + | No |
Chemistry : DDE
ORF sequence :
MIKIDLCSEDLEAIAEELDDPEIDLRTRHRLMTVRLHHLKVPHQAIAQALSLCEDTVTNYLKLYRDGGLAGLLEDRYYRPTSSVAPWLEHIAKSFEQDPV
ATSGEGAARIEQISGIRLSDAQARRIMIGLGLKFRKTAAVPGGADVQLQFEFLHEELLPRLDEAQQGRRRVFFVDAAHFVLGSFLGMIWSFTRIFVPSAS
GRQRYNVLGAVETRDHDFVSIRTTDSINEQVVCDLITKIYETYGNEPITLVMDNARYQRSRLVGEVAEGLGIELLYLPPYSPNLNLIERVWRLVKTRCLR
NKYFESFALFRAAIDEYLDSLSEANRRYLQSLVTENFQLFEIPNS
ATSGEGAARIEQISGIRLSDAQARRIMIGLGLKFRKTAAVPGGADVQLQFEFLHEELLPRLDEAQQGRRRVFFVDAAHFVLGSFLGMIWSFTRIFVPSAS
GRQRYNVLGAVETRDHDFVSIRTTDSINEQVVCDLITKIYETYGNEPITLVMDNARYQRSRLVGEVAEGLGIELLYLPPYSPNLNLIERVWRLVKTRCLR
NKYFESFALFRAAIDEYLDSLSEANRRYLQSLVTENFQLFEIPNS
Blast result :
Comments
ISVsp12 is 57% aa similar to ISAcma14.
There are 3 copies of ISVsp12 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There are 3 copies of ISVsp12 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission