ISVsp10
- Family IS110
- Group IS1111
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1614 bp
Ends
IR Length : 10/11
IRL : gacgccATGATGGCGGGATCAGCAAACATCAGGCAACATGCCTGGTGCCA
IRR : ---cctATGAGGCGGGTCAATTGGTTTGTGAGGTGACTTGCGGTTTTCTT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| gccatgcata | agccatgggt | 0 | |
| accatgagta | agccatgggt | 0 |
DNA sequence
GACGCCATGATGGCGGGATCAGCAAACATCAGGCAACATGCCTGGTGCCACGAGAAAGGCACTGACCCACACCATCATGACCACCTATACTTTGCACACC
CCCATCCCTTGTCACGCAGCGATCTGCAAGGCCCTCAACCTTGCTGGCCAGGAACGCCGTGTCACCCTGGGCCTGGATCTGGAGCTAAACACGCCCGCAG
GTTCCCTGGTCGTCGCCGGAGGCCAGCCGCTCAATCTGGGCAAGCACCCTCGCAGCCTCTGGGTCGAACTGGTTGGCTGGCTCGTCAATCAAGGCTGTGA
AGTCCACTGCGTCCAGGAGGCTTGTGGCTTTGGCTGGGAGTTTCACCGCGAGTTGGAAGGTGCTGGAGCTCATAGTGTGGTGGTTGCTCCCCAGGAACTC
AGCGGCAAACGCAAGACCGACAAGCGTGACGCCCGCATGCTGGCCACCCTGCTCTGGGACTACGTGAGCCGGGGCAACCGAGCCTGCCTGCGCCCGGTCA
GGGTCCCCACGGTGGAGAAGCAGCAGCAACGAGGGAGTCACCGCCGCCGAGAGCAGGTGATCAAGCTGCGTGGTCAGATTGCATCCCAGGGACGCAGCTT
GCTATGGGACCATGGCTGGTTGAGGGATCTCGACAGCTGGTGGGCACCCAAGAACTGGGAGCAGCTCAGAGCCGATCTGCTCGCCGCCGGCCGCACGTGG
CTGGTGGACATGATCGAGCCCATGCAGAGAATGTGCCTGCAATTAAATGGTTATAGCGAGGAGCTCAAAAAGAAGGCCATCAGCGAAGTCAAACCTCCGA
AGACTGCCATCAAGAAGTCCGAACCAGGCTTGATCTTGAATGCAGCCGAGCCTCCCAGAGCGTCGGAGGAGGCCCCAGCAGCCCAGGTTCGGCCCAAAGG
ACTCGGCGAACTCAGCTATGCGATCATCGCCGCAGAGGTGGGTGACTGGAACCGGTTCAAGAACCGGGGACAGCCCGGCTCGTTCATCGGCTGCTGCCCC
AGTGAGTACAGTAGCGGGGAAAAGCAAAAGCTTGGGCAGATTGACCGGATGGGCAGCTCGCGGATCCGCACGACGCTGGTGGAAGCGGCGTGGAGGATCT
GCAGGCTCAATCCGAACTGGAGGGGGGTGAGGAAATATCCTGAGGAACTGGGGCCGCAAGGCACGGTCCGTGGAGCCAGGAAGCGCAAGGCCATCGTGGC
CTGTGCCCGGATGCTCATGGTTGATCTTTGGAGATTGCACATGGGGACGGCAACGTTGGAAGGCCTGGGCTTGGAGCCAGCCACCACCTAAGACACCCCC
TGTTGAAACACTTTCAGTCGGAGAATCTGATCGACCCATGGCTTGGCCGCCGCAAGGCTTAGCCCGCAGCAGTAGAATGATCGATTCCTGACTGATCCTT
GTAGCCCGCAAGGGCGCGATGCACGGCCCTGAGGGCCTGTGCGGATAGGAGCATGAGAGCAGGAGTAAAGCTGCTCAACAGCGCGTGTCATAGACCGGGC
TGCATCAAGGATCAGACGACAGAAAGAATCACGACGAACCCTCCACCCTCAAAGAGCAGCAACGCCGAAGAAAACCGCAAGTCACCTCACAAACCAATTG
ACCCGCCTCATAGG
CCCATCCCTTGTCACGCAGCGATCTGCAAGGCCCTCAACCTTGCTGGCCAGGAACGCCGTGTCACCCTGGGCCTGGATCTGGAGCTAAACACGCCCGCAG
GTTCCCTGGTCGTCGCCGGAGGCCAGCCGCTCAATCTGGGCAAGCACCCTCGCAGCCTCTGGGTCGAACTGGTTGGCTGGCTCGTCAATCAAGGCTGTGA
AGTCCACTGCGTCCAGGAGGCTTGTGGCTTTGGCTGGGAGTTTCACCGCGAGTTGGAAGGTGCTGGAGCTCATAGTGTGGTGGTTGCTCCCCAGGAACTC
AGCGGCAAACGCAAGACCGACAAGCGTGACGCCCGCATGCTGGCCACCCTGCTCTGGGACTACGTGAGCCGGGGCAACCGAGCCTGCCTGCGCCCGGTCA
GGGTCCCCACGGTGGAGAAGCAGCAGCAACGAGGGAGTCACCGCCGCCGAGAGCAGGTGATCAAGCTGCGTGGTCAGATTGCATCCCAGGGACGCAGCTT
GCTATGGGACCATGGCTGGTTGAGGGATCTCGACAGCTGGTGGGCACCCAAGAACTGGGAGCAGCTCAGAGCCGATCTGCTCGCCGCCGGCCGCACGTGG
CTGGTGGACATGATCGAGCCCATGCAGAGAATGTGCCTGCAATTAAATGGTTATAGCGAGGAGCTCAAAAAGAAGGCCATCAGCGAAGTCAAACCTCCGA
AGACTGCCATCAAGAAGTCCGAACCAGGCTTGATCTTGAATGCAGCCGAGCCTCCCAGAGCGTCGGAGGAGGCCCCAGCAGCCCAGGTTCGGCCCAAAGG
ACTCGGCGAACTCAGCTATGCGATCATCGCCGCAGAGGTGGGTGACTGGAACCGGTTCAAGAACCGGGGACAGCCCGGCTCGTTCATCGGCTGCTGCCCC
AGTGAGTACAGTAGCGGGGAAAAGCAAAAGCTTGGGCAGATTGACCGGATGGGCAGCTCGCGGATCCGCACGACGCTGGTGGAAGCGGCGTGGAGGATCT
GCAGGCTCAATCCGAACTGGAGGGGGGTGAGGAAATATCCTGAGGAACTGGGGCCGCAAGGCACGGTCCGTGGAGCCAGGAAGCGCAAGGCCATCGTGGC
CTGTGCCCGGATGCTCATGGTTGATCTTTGGAGATTGCACATGGGGACGGCAACGTTGGAAGGCCTGGGCTTGGAGCCAGCCACCACCTAAGACACCCCC
TGTTGAAACACTTTCAGTCGGAGAATCTGATCGACCCATGGCTTGGCCGCCGCAAGGCTTAGCCCGCAGCAGTAGAATGATCGATTCCTGACTGATCCTT
GTAGCCCGCAAGGGCGCGATGCACGGCCCTGAGGGCCTGTGCGGATAGGAGCATGAGAGCAGGAGTAAAGCTGCTCAACAGCGCGTGTCATAGACCGGGC
TGCATCAAGGATCAGACGACAGAAAGAATCACGACGAACCCTCCACCCTCAAAGAGCAGCAACGCCGAAGAAAACCGCAAGTCACCTCACAAACCAATTG
ACCCGCCTCATAGG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1215 bp | 404 aa | 77 | 1291 | + | No |
Chemistry : DEDD
ORF sequence :
MTTYTLHTPIPCHAAICKALNLAGQERRVTLGLDLELNTPAGSLVVAGGQPLNLGKHPRSLWVELVGWLVNQGCEVHCVQEACGFGWEFHRELEGAGAHS
VVVAPQELSGKRKTDKRDARMLATLLWDYVSRGNRACLRPVRVPTVEKQQQRGSHRRREQVIKLRGQIASQGRSLLWDHGWLRDLDSWWAPKNWEQLRAD
LLAAGRTWLVDMIEPMQRMCLQLNGYSEELKKKAISEVKPPKTAIKKSEPGLILNAAEPPRASEEAPAAQVRPKGLGELSYAIIAAEVGDWNRFKNRGQP
GSFIGCCPSEYSSGEKQKLGQIDRMGSSRIRTTLVEAAWRICRLNPNWRGVRKYPEELGPQGTVRGARKRKAIVACARMLMVDLWRLHMGTATLEGLGLE
PATT
VVVAPQELSGKRKTDKRDARMLATLLWDYVSRGNRACLRPVRVPTVEKQQQRGSHRRREQVIKLRGQIASQGRSLLWDHGWLRDLDSWWAPKNWEQLRAD
LLAAGRTWLVDMIEPMQRMCLQLNGYSEELKKKAISEVKPPKTAIKKSEPGLILNAAEPPRASEEAPAAQVRPKGLGELSYAIIAAEVGDWNRFKNRGQP
GSFIGCCPSEYSSGEKQKLGQIDRMGSSRIRTTLVEAAWRICRLNPNWRGVRKYPEELGPQGTVRGARKRKAIVACARMLMVDLWRLHMGTATLEGLGLE
PATT
Blast result :
Comments
ISVsp10 is 46% aa similar to ISGdi7.
There are 2 copies of ISVsp10 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp10 inserts at a specific position in an abundant and inexact 110 bp repeat sequence.
There are 2 copies of ISVsp10 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp10 inserts at a specific position in an abundant and inexact 110 bp repeat sequence.
References
1] DeBoy, R. (2010) Direct submission