ISVsp9
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1730 bp
Ends
IR Length : 17
IRL : GAGACTGTGTCAAAACTACTGAGAACGATCAATCAAGCTGCGGATGCTGC
IRR : GAGACTGTGTCAAAACTCACATCGTTCTCGTCGGTCCTTCGATCACGGCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAATGCATGC | TCAC | GAATGCATCC | 4 |
DNA sequence
GAGACTGTGTCAAAACTACTGAGAACGATCAATCAAGCTGCGGATGCTGCGCGATCATGAGTCGTTTCATCGCTGGTGCGGATCGGGATCAAGTGTGGTT
GTTGCCTGAACGCCTGGACGACTATGTATCCGAGGGCAACCCGGTGCGCTTCATTGATGCCTTTGTTGAGGGCCTGGACCCCCAGCAGGTGCCACTACTG
CTCACTGCCCCGGCAGCCACCGGCAGACCTCGTTATGCTCCTGGTGATCTGCTCAAGCTCTTTATCTACGGCTATCTCAACCGGGTCCGTTCCAGCCGGG
AGCTTGAGCATCTGACCCAACGCAATCTGGAGGTCATCTGGTTGCTCAAACGCCTGCGCCCCGACCACAAGACCATTAGTGAGTTTCGGCGCGTCCATCG
GGCGGCTTTCAAGCAGGTCTTCCGGCAGTTCAATGTCCTGTGCCGGGACCTGGCGCTCTTCGGCGCAGAACTCGTGGCCATCGATGGCACCTTCTTCAAG
GCCGTCAACTCCAGGAGCCGCAACTTCCCCCAGGCCAAGCTGGAGAACCTCATCAAGAACGTGGACAAGGGCATTGAGGGCTACCTCAAGGACCTTGAAC
TCAACGATGCCGCCGCAGACTCCCCTGACGCCCTGGGGACGGTCAAAGAGGCAAACGTCGACGATCTCAAGGAACGCATCGCCAAGCTCCAGAGTGCAAA
GGCGCGCTACGAGCAGATGCAGAAGGACCTTGAAGAGAGCGGTGAGAGCCAGGTGTCACTCACCGATCCTGACGCCCGCTTGCTCAACAAGAGCACGGCC
CAGGGCAGTGTCGTGGGCTACAACGTGCAGAGCGTGGTCGATGGAGAACATCATCTTATTGTCGAAATCGAAGCCACCAACCAGGGCAACGACTTTGGGC
AGTTCACCAAGATGGCGGTGCAGGCCAAGGAGCAGTTGCAAGTGGAGACGCTCATTGGCGTGGCCGACGGAGGGTACTATCAAATCAACGATCTGAAGGC
CGCCGAGGCCCAGGGCATCGAGGTGCATGTGCCCCAGCGGGAGGATCGCCTGGAGAAGAAGGGCTTGTTTGCCCGTGAGGAGTTGCGCTACGACAAGGAA
CAGGACTGCTATCATTGCCCTGGCGGAGCCAGGCTTGAACGGAAAAGCGACAACCAGATCCGCGGCCTTCGATATGAAGTGTACGCGAACTCTGCGGCCT
GCCGGGACTGTCCTTTGAGGAAGCAGTGCACCACGGGGAAGCTTCGCAAGATCCGCCATGAGGAGAACCCGGAGGTGATGAAGCGGGTGCGGGAGCGCAT
GGCGGCCCAGCCAGAGGTGTATGCGCGGCGCAAGGGGTTGGTGGAACACCCCTTTGGCACGATGAAGTTTTGGTGGGGGCAAGGATCCCTGCTGACGCGT
GGACTGGCAGCGGTGAATGCGGAGGTGACGCTCAGTGCCCTGGCCTACAACATGAAGCGTGCGCTCAAAGTGGTGGGAGTGCGCGCATTGCTTGAGCGGG
TGAGCCCGGCCCTGCTGGCATCAGCCAGCTAGGAGGGGCGGAGGGGTGCTTTTTGCGGGGGTGCAACGCTGCAGGAAGCCTTCAAGCGGCATCAGAAGAC
CAAAATCGTGGAAACGAAAAGTCATGTGGCAGAAGGGGGAAGCGAAGAGCGCCCACGCATTCGAAAATAGCGCCTCCAACTGCCGTGATCGAAGGACCGA
CGAGAACGATGTGAGTTTTGACACAGTCTC
GTTGCCTGAACGCCTGGACGACTATGTATCCGAGGGCAACCCGGTGCGCTTCATTGATGCCTTTGTTGAGGGCCTGGACCCCCAGCAGGTGCCACTACTG
CTCACTGCCCCGGCAGCCACCGGCAGACCTCGTTATGCTCCTGGTGATCTGCTCAAGCTCTTTATCTACGGCTATCTCAACCGGGTCCGTTCCAGCCGGG
AGCTTGAGCATCTGACCCAACGCAATCTGGAGGTCATCTGGTTGCTCAAACGCCTGCGCCCCGACCACAAGACCATTAGTGAGTTTCGGCGCGTCCATCG
GGCGGCTTTCAAGCAGGTCTTCCGGCAGTTCAATGTCCTGTGCCGGGACCTGGCGCTCTTCGGCGCAGAACTCGTGGCCATCGATGGCACCTTCTTCAAG
GCCGTCAACTCCAGGAGCCGCAACTTCCCCCAGGCCAAGCTGGAGAACCTCATCAAGAACGTGGACAAGGGCATTGAGGGCTACCTCAAGGACCTTGAAC
TCAACGATGCCGCCGCAGACTCCCCTGACGCCCTGGGGACGGTCAAAGAGGCAAACGTCGACGATCTCAAGGAACGCATCGCCAAGCTCCAGAGTGCAAA
GGCGCGCTACGAGCAGATGCAGAAGGACCTTGAAGAGAGCGGTGAGAGCCAGGTGTCACTCACCGATCCTGACGCCCGCTTGCTCAACAAGAGCACGGCC
CAGGGCAGTGTCGTGGGCTACAACGTGCAGAGCGTGGTCGATGGAGAACATCATCTTATTGTCGAAATCGAAGCCACCAACCAGGGCAACGACTTTGGGC
AGTTCACCAAGATGGCGGTGCAGGCCAAGGAGCAGTTGCAAGTGGAGACGCTCATTGGCGTGGCCGACGGAGGGTACTATCAAATCAACGATCTGAAGGC
CGCCGAGGCCCAGGGCATCGAGGTGCATGTGCCCCAGCGGGAGGATCGCCTGGAGAAGAAGGGCTTGTTTGCCCGTGAGGAGTTGCGCTACGACAAGGAA
CAGGACTGCTATCATTGCCCTGGCGGAGCCAGGCTTGAACGGAAAAGCGACAACCAGATCCGCGGCCTTCGATATGAAGTGTACGCGAACTCTGCGGCCT
GCCGGGACTGTCCTTTGAGGAAGCAGTGCACCACGGGGAAGCTTCGCAAGATCCGCCATGAGGAGAACCCGGAGGTGATGAAGCGGGTGCGGGAGCGCAT
GGCGGCCCAGCCAGAGGTGTATGCGCGGCGCAAGGGGTTGGTGGAACACCCCTTTGGCACGATGAAGTTTTGGTGGGGGCAAGGATCCCTGCTGACGCGT
GGACTGGCAGCGGTGAATGCGGAGGTGACGCTCAGTGCCCTGGCCTACAACATGAAGCGTGCGCTCAAAGTGGTGGGAGTGCGCGCATTGCTTGAGCGGG
TGAGCCCGGCCCTGCTGGCATCAGCCAGCTAGGAGGGGCGGAGGGGTGCTTTTTGCGGGGGTGCAACGCTGCAGGAAGCCTTCAAGCGGCATCAGAAGAC
CAAAATCGTGGAAACGAAAAGTCATGTGGCAGAAGGGGGAAGCGAAGAGCGCCCACGCATTCGAAAATAGCGCCTCCAACTGCCGTGATCGAAGGACCGA
CGAGAACGATGTGAGTTTTGACACAGTCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1476 bp | 491 aa | 57 | 1532 | + | No |
Chemistry : DDE
ORF sequence :
MSRFIAGADRDQVWLLPERLDDYVSEGNPVRFIDAFVEGLDPQQVPLLLTAPAATGRPRYAPGDLLKLFIYGYLNRVRSSRELEHLTQRNLEVIWLLKRL
RPDHKTISEFRRVHRAAFKQVFRQFNVLCRDLALFGAELVAIDGTFFKAVNSRSRNFPQAKLENLIKNVDKGIEGYLKDLELNDAAADSPDALGTVKEAN
VDDLKERIAKLQSAKARYEQMQKDLEESGESQVSLTDPDARLLNKSTAQGSVVGYNVQSVVDGEHHLIVEIEATNQGNDFGQFTKMAVQAKEQLQVETLI
GVADGGYYQINDLKAAEAQGIEVHVPQREDRLEKKGLFAREELRYDKEQDCYHCPGGARLERKSDNQIRGLRYEVYANSAACRDCPLRKQCTTGKLRKIR
HEENPEVMKRVRERMAAQPEVYARRKGLVEHPFGTMKFWWGQGSLLTRGLAAVNAEVTLSALAYNMKRALKVVGVRALLERVSPALLASAS
RPDHKTISEFRRVHRAAFKQVFRQFNVLCRDLALFGAELVAIDGTFFKAVNSRSRNFPQAKLENLIKNVDKGIEGYLKDLELNDAAADSPDALGTVKEAN
VDDLKERIAKLQSAKARYEQMQKDLEESGESQVSLTDPDARLLNKSTAQGSVVGYNVQSVVDGEHHLIVEIEATNQGNDFGQFTKMAVQAKEQLQVETLI
GVADGGYYQINDLKAAEAQGIEVHVPQREDRLEKKGLFAREELRYDKEQDCYHCPGGARLERKSDNQIRGLRYEVYANSAACRDCPLRKQCTTGKLRKIR
HEENPEVMKRVRERMAAQPEVYARRKGLVEHPFGTMKFWWGQGSLLTRGLAAVNAEVTLSALAYNMKRALKVVGVRALLERVSPALLASAS
Blast result :
Comments
ISVsp9 is 61% aa similar to ISPpu16.
There is 1 copy of ISVsp9 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There is 1 copy of ISVsp9 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission