ISVsp9

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1730 bp

Ends


IR Length : 17

IRL : GAGACTGTGTCAAAACTACTGAGAACGATCAATCAAGCTGCGGATGCTGC
IRR : GAGACTGTGTCAAAACTCACATCGTTCTCGTCGGTCCTTCGATCACGGCA

Insertion site


Left flankDirect repeatRight flankDR Length
CAATGCATGCTCACGAATGCATCC4

DNA sequence

GAGACTGTGTCAAAACTACTGAGAACGATCAATCAAGCTGCGGATGCTGCGCGATCATGAGTCGTTTCATCGCTGGTGCGGATCGGGATCAAGTGTGGTT
GTTGCCTGAACGCCTGGACGACTATGTATCCGAGGGCAACCCGGTGCGCTTCATTGATGCCTTTGTTGAGGGCCTGGACCCCCAGCAGGTGCCACTACTG
CTCACTGCCCCGGCAGCCACCGGCAGACCTCGTTATGCTCCTGGTGATCTGCTCAAGCTCTTTATCTACGGCTATCTCAACCGGGTCCGTTCCAGCCGGG
AGCTTGAGCATCTGACCCAACGCAATCTGGAGGTCATCTGGTTGCTCAAACGCCTGCGCCCCGACCACAAGACCATTAGTGAGTTTCGGCGCGTCCATCG
GGCGGCTTTCAAGCAGGTCTTCCGGCAGTTCAATGTCCTGTGCCGGGACCTGGCGCTCTTCGGCGCAGAACTCGTGGCCATCGATGGCACCTTCTTCAAG
GCCGTCAACTCCAGGAGCCGCAACTTCCCCCAGGCCAAGCTGGAGAACCTCATCAAGAACGTGGACAAGGGCATTGAGGGCTACCTCAAGGACCTTGAAC
TCAACGATGCCGCCGCAGACTCCCCTGACGCCCTGGGGACGGTCAAAGAGGCAAACGTCGACGATCTCAAGGAACGCATCGCCAAGCTCCAGAGTGCAAA
GGCGCGCTACGAGCAGATGCAGAAGGACCTTGAAGAGAGCGGTGAGAGCCAGGTGTCACTCACCGATCCTGACGCCCGCTTGCTCAACAAGAGCACGGCC
CAGGGCAGTGTCGTGGGCTACAACGTGCAGAGCGTGGTCGATGGAGAACATCATCTTATTGTCGAAATCGAAGCCACCAACCAGGGCAACGACTTTGGGC
AGTTCACCAAGATGGCGGTGCAGGCCAAGGAGCAGTTGCAAGTGGAGACGCTCATTGGCGTGGCCGACGGAGGGTACTATCAAATCAACGATCTGAAGGC
CGCCGAGGCCCAGGGCATCGAGGTGCATGTGCCCCAGCGGGAGGATCGCCTGGAGAAGAAGGGCTTGTTTGCCCGTGAGGAGTTGCGCTACGACAAGGAA
CAGGACTGCTATCATTGCCCTGGCGGAGCCAGGCTTGAACGGAAAAGCGACAACCAGATCCGCGGCCTTCGATATGAAGTGTACGCGAACTCTGCGGCCT
GCCGGGACTGTCCTTTGAGGAAGCAGTGCACCACGGGGAAGCTTCGCAAGATCCGCCATGAGGAGAACCCGGAGGTGATGAAGCGGGTGCGGGAGCGCAT
GGCGGCCCAGCCAGAGGTGTATGCGCGGCGCAAGGGGTTGGTGGAACACCCCTTTGGCACGATGAAGTTTTGGTGGGGGCAAGGATCCCTGCTGACGCGT
GGACTGGCAGCGGTGAATGCGGAGGTGACGCTCAGTGCCCTGGCCTACAACATGAAGCGTGCGCTCAAAGTGGTGGGAGTGCGCGCATTGCTTGAGCGGG
TGAGCCCGGCCCTGCTGGCATCAGCCAGCTAGGAGGGGCGGAGGGGTGCTTTTTGCGGGGGTGCAACGCTGCAGGAAGCCTTCAAGCGGCATCAGAAGAC
CAAAATCGTGGAAACGAAAAGTCATGTGGCAGAAGGGGGAAGCGAAGAGCGCCCACGCATTCGAAAATAGCGCCTCCAACTGCCGTGATCGAAGGACCGA
CGAGAACGATGTGAGTTTTGACACAGTCTC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1476 bp491 aa571532+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSRFIAGADRDQVWLLPERLDDYVSEGNPVRFIDAFVEGLDPQQVPLLLTAPAATGRPRYAPGDLLKLFIYGYLNRVRSSRELEHLTQRNLEVIWLLKRL
RPDHKTISEFRRVHRAAFKQVFRQFNVLCRDLALFGAELVAIDGTFFKAVNSRSRNFPQAKLENLIKNVDKGIEGYLKDLELNDAAADSPDALGTVKEAN
VDDLKERIAKLQSAKARYEQMQKDLEESGESQVSLTDPDARLLNKSTAQGSVVGYNVQSVVDGEHHLIVEIEATNQGNDFGQFTKMAVQAKEQLQVETLI
GVADGGYYQINDLKAAEAQGIEVHVPQREDRLEKKGLFAREELRYDKEQDCYHCPGGARLERKSDNQIRGLRYEVYANSAACRDCPLRKQCTTGKLRKIR
HEENPEVMKRVRERMAAQPEVYARRKGLVEHPFGTMKFWWGQGSLLTRGLAAVNAEVTLSALAYNMKRALKVVGVRALLERVSPALLASAS

 

Blast result :
Comments
ISVsp9 is 61% aa similar to ISPpu16.
There is 1 copy of ISVsp9 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1]DeBoy, R. (2010) Direct submission