ISVsp8

  • Family IS1380
  • Group
MGE type ISRelated element(s) :
Isoform ISVsp19Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1802 bp

Ends


IR Length : 16

IRL : CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTA
IRR : CCCGCATTTCTCATACCCCCTGACTTGACAACCCAAGATCAGCGGGTTTT

Insertion site


Left flankDirect repeatRight flankDR Length
TATCTGTCCCCTAGTTGCAGCCGC4
TTCATCATTCCTAGTTTCCGAAGC4
CGTCTCGGACTTAGCGTGAAGACC4
CCGCCGCTCCTTAGGGGGCTGAAA4
AACGCATCGTCTAg/aAGGAAGTACT6

DNA sequence

CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTAGTCTTTGATTACCAAGGCAAAAACCAAGGCATGCACCAGACTCAAGCAGC
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGTGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1497 bp498 aa811577+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MHQTQAATQCTQAKLEFQALGGRRVEADFSGGYLSSEGGSLLLRQIDQKLGLCEKLAGCFTDRRDQRFVEHDLAGMLRQRIFGLALGYEDLNDHDCLRRD
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP

 

Blast result :
Comments
ISVsp8 is 100% aa similar to ISVsp19.
There are 5 copies of ISVsp8 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1] DeBoy, R. (2010) Direct submission