ISVsp8
- Family IS1380
- Group
Isoform ISVsp19Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1802 bp
Ends
IR Length : 16
IRL : CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTA
IRR : CCCGCATTTCTCATACCCCCTGACTTGACAACCCAAGATCAGCGGGTTTT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATCTGTCCC | CTAG | TTGCAGCCGC | 4 |
TTCATCATTC | CTAG | TTTCCGAAGC | 4 |
CGTCTCGGAC | TTAG | CGTGAAGACC | 4 |
CCGCCGCTCC | TTAG | GGGGCTGAAA | 4 |
AACGCATCGT | CTAg/a | AGGAAGTACT | 6 |
DNA sequence
CCCGCATTTCTCATACGCGAGAAGCTTGAGCCGGGTGCAGCGGCGCATTAGTCTTTGATTACCAAGGCAAAAACCAAGGCATGCACCAGACTCAAGCAGC
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGTGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
GACACAGTGTACACAGGCCAAGTTGGAGTTTCAAGCGCTGGGTGGCAGGCGTGTGGAGGCGGATTTCTCAGGAGGTTACCTCTCCAGTGAAGGGGGCAGC
CTCCTGTTGCGCCAGATCGACCAGAAGCTGGGCCTGTGTGAGAAGCTGGCGGGTTGTTTCACTGACCGACGCGACCAGCGCTTCGTCGAACACGATCTGG
CGGGCATGCTGCGTCAGCGTATTTTTGGTCTGGCCCTGGGCTACGAAGACCTCAATGACCACGACTGTCTGCGCCGAGATCCCCTCCTGGCTGCCGCTTG
CGGGCGGGCCGATGTCTTGGGGCAGGAGCGGCATCATGCGCAGGATGCAGGCTGCCCCCTGGCGGGCAAGAGCACCCTCAACCGCATGGAGCTGGGTGCC
CAGGAACACGCGCTCACCAAAAAGATCCACGCTGATGCCGACAGGATCCAAGACCTGCTTTTGCAGATGGCGGTGGCGGCCATCCCACGCAAAAGCGGGG
TCATTGTCCTGGACTTTGATGCCACCGACGACCTGCTTCACGGCCACCAGGAAGGCCGCTTCTATCACGGTTACTACAAAGGCTACTGTTACCTGCCCCT
TTATTGCTTTTGTGGGGATGTGCCTCTGTGGTCACAGTTGCGCACCGCCGACGGGGATGCGGCAGGCGGCACCCTGGAGGCCCTCCAGAAGATCGTGAAG
GCCATCCGCGGCCGGTTTGGCAGGCAGGTGGTCATCATTGTGCGTGCCGACAGCGGGTTCTGCCGCGATGAGCTCATGAGCTGGATCGAGACCCAGCCGC
AGCTGTACTATGTTTTTGGACTGGCCCGCAACGTCCGCTTGCAGGAGATGCTCGCCCCCACCTTCTGGCGGACGGCCGCGAAGCTCGATGCCGAGGCGGT
GCGCCTTGCAAAAGCTGCCGGAGCCAAGGCTCCGCCCGAACTGGAAGGAACCGCACGGGAGTTTGAGGAGTTGAGCTACAGCACGCTCAAGACCTGGAGC
CGGGAACGGCGTGTCATCGGCAAGGCCGAAATAACCCAGGGCAAGACCAACCCCCGTTTCATTGTCACCAACATCAGTTCCAGGGAGCCATGGGCGCAGG
GGGAGGAGCAGTTTGCCACGGGCAGCGGGTTGTATGAACGCTTCTATTGCGCCCGGGGCAACATGGAGAACCGCATCAAGGAACAGCAGCTGGACCTGTT
TGCCGACCGCACTTCAACTGCCTGGAAGAGCAGCAACCAGTTGCGTCTGTGGTTTTCGACTTTTGCCTATTTGCTGTTGAGCCAGATGCGTGCGGTGGCC
TTGCACGGCACGCCTCTGGCTACAGCCACGGTGGGCACGATCCGGCTGAAGTTGCTCAAAATCGCGGCCCTGATCACCGTGAGCGTGAGGCGCATTTATG
TGCAGCTGCCAAGTGCCTGCACTCTCAAAGAAGTCTATGGTCTGGCCCAGCGAAGACTGGCTGGATGCAGCCCCTGAGACCGGGGCCTTTTCACTCAAAG
GGACATCTGCAGCCCATGCAGAGGGATGCTTATGCCTTCGCACCCTGGGCAAAGAGCATCCAGGCCTCTTGAACACGCCCTGAGAGCCTTCAGTTCCCTG
GCCCGACCCATTCCGCCCACCAAGTCTCCCCCCCACAGAAGGCGCACACCCCAAAACCCGCTGATCTTGGGTTGTCAAGTCAGGGGGTATGAGAAATGCG
GG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1497 bp | 498 aa | 81 | 1577 | + | No |
Chemistry : DDE
ORF sequence :
MHQTQAATQCTQAKLEFQALGGRRVEADFSGGYLSSEGGSLLLRQIDQKLGLCEKLAGCFTDRRDQRFVEHDLAGMLRQRIFGLALGYEDLNDHDCLRRD
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP
PLLAAACGRADVLGQERHHAQDAGCPLAGKSTLNRMELGAQEHALTKKIHADADRIQDLLLQMAVAAIPRKSGVIVLDFDATDDLLHGHQEGRFYHGYYK
GYCYLPLYCFCGDVPLWSQLRTADGDAAGGTLEALQKIVKAIRGRFGRQVVIIVRADSGFCRDELMSWIETQPQLYYVFGLARNVRLQEMLAPTFWRTAA
KLDAEAVRLAKAAGAKAPPELEGTAREFEELSYSTLKTWSRERRVIGKAEITQGKTNPRFIVTNISSREPWAQGEEQFATGSGLYERFYCARGNMENRIK
EQQLDLFADRTSTAWKSSNQLRLWFSTFAYLLLSQMRAVALHGTPLATATVGTIRLKLLKIAALITVSVRRIYVQLPSACTLKEVYGLAQRRLAGCSP
Blast result :
Comments
ISVsp8 is 100% aa similar to ISVsp19.
There are 5 copies of ISVsp8 in the chromosome of Verrucomicrobium spinosum DSM 4136.
There are 5 copies of ISVsp8 in the chromosome of Verrucomicrobium spinosum DSM 4136.
References
1] DeBoy, R. (2010) Direct submission