ISVsp7
- Family ISAs1
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_ABIZ00000000.1 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1237 bp
Ends
IR Length : 17
IRL : CAGGGCTTACGCATGAACAGAGTGAGAAAACTTAACATCTCTTAACGATA
IRR : CAGGGCTTACGCATGAAGGAGGCCTAGCATTTGGAGCCTGAAGGCCGGGT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| GGTATCCAGA | GCGGAGGTG | GAGGAGTGGC | 9 |
| TCACAAGCTT | GTCATGTTC | AGGGTGCAAC | 9 |
| TGGTCTCCGC | AGCCTGGAT | GCACAGGGCG | 9 |
| ACGTCTGCGA | ACCCCGTCC | GGGGTGGCAA | 9 |
| GAATTGCCTA | TGTTTGGTC | GCCGTTTAAC | 9 |
DNA sequence
CAGGGCTTACGCATGAACAGAGTGAGAAAACTTAACATCTCTTAACGATATGATTTTTCTACAGGGCACCGCTGTTTAAGCTGGGAGAGTGACCCACTCC
CTTCCTCCTCAAGGCACTTTGGAAGCCCTCCGGGCCAAGTTTGCCCAGATTCATGATCCCCGCCAGGCTGGCAAAGTACGTCATCGCATTGATGAGGTGC
TCATCATCGCTTTCTGTTCGACTCTCTGCGATGGCGAAAGCTATTTGGATATGGGGGATTTTGCCCAGAGCCAGCTGTCGTGGCTGCAAAGCTTTCTTCC
TCTGAAGCATGGGGCTCCGTCCCACGACGTGTTTCGCAATGTGCTCATGGCCATACAACCGCAGGCCCTGCTTGAGGTGCTCACGGGCTGGTGTGGCGAC
CTTGAGGGCAGACATATTGCCATAGATGGCAAAGCTCTGCGCGGCACTCACAACGCTGAAACCGGCAGGCACTTGGTCCATTTACTACGGGCCTGGGTGG
ACGACTACCACCTCAGCGCCGGGCAGATCACCTGCCATGAGAAGAGCAACGAAATTGAGGCCATTCCCCGTCTGCTGGAAAGCCTGCAACTCAAAGGGGC
CACCGTCACCATTGATGCCATGGGCACCCAAGCTCACATTGCCGAGCAAATCACCGGGGCAGGGGCCGATTATGTCCTGGCACTCAAGGCCAACCACCCA
AGGGCTCATGAGACTGTAAGAAAGCACTTCACGGAAGCCGAGCGCCTGGACCTCAGCCCCTCCCACCATCGCAAAAGCGTGACGCTGGAACTCTCCCACG
GGCGCTGTGAAAGACGTGAGTACACCATCACTGAGGAACTTGACTGGTACCACAAGAGCTGGAAATGGGCCGGACTGCAAAGCGTGGCACAGGTGCGCCG
CCAGGTGCAGCGCAGCCACGATGGGCCGCCGTTGGAAGAGGTGCACTACTTCCTGTGCAGCTTCAAAGCCGATGTGGAACGCCTTGCCAAACTGGTGCGC
GGACACTGGAGTGTTGAAAACCGCTGCCACTGGGTGCTGGATGTGACCTTCAATGAGGACCACTGCCAGGTGAGGGACCGCAACGCGGCCCACAACCTCA
CCATCCTGCGCGAAATGGTCATCCCCACCCTGCACCGGCACCCAGCAAAAGTCAGCCTGCGCAGGAAGCGCAAACTCGCCACCATGGACCCGGCCTTCAG
GCTCCAAATGCTAGGCCTCCTTCATGCGTAAGCCCTG
CTTCCTCCTCAAGGCACTTTGGAAGCCCTCCGGGCCAAGTTTGCCCAGATTCATGATCCCCGCCAGGCTGGCAAAGTACGTCATCGCATTGATGAGGTGC
TCATCATCGCTTTCTGTTCGACTCTCTGCGATGGCGAAAGCTATTTGGATATGGGGGATTTTGCCCAGAGCCAGCTGTCGTGGCTGCAAAGCTTTCTTCC
TCTGAAGCATGGGGCTCCGTCCCACGACGTGTTTCGCAATGTGCTCATGGCCATACAACCGCAGGCCCTGCTTGAGGTGCTCACGGGCTGGTGTGGCGAC
CTTGAGGGCAGACATATTGCCATAGATGGCAAAGCTCTGCGCGGCACTCACAACGCTGAAACCGGCAGGCACTTGGTCCATTTACTACGGGCCTGGGTGG
ACGACTACCACCTCAGCGCCGGGCAGATCACCTGCCATGAGAAGAGCAACGAAATTGAGGCCATTCCCCGTCTGCTGGAAAGCCTGCAACTCAAAGGGGC
CACCGTCACCATTGATGCCATGGGCACCCAAGCTCACATTGCCGAGCAAATCACCGGGGCAGGGGCCGATTATGTCCTGGCACTCAAGGCCAACCACCCA
AGGGCTCATGAGACTGTAAGAAAGCACTTCACGGAAGCCGAGCGCCTGGACCTCAGCCCCTCCCACCATCGCAAAAGCGTGACGCTGGAACTCTCCCACG
GGCGCTGTGAAAGACGTGAGTACACCATCACTGAGGAACTTGACTGGTACCACAAGAGCTGGAAATGGGCCGGACTGCAAAGCGTGGCACAGGTGCGCCG
CCAGGTGCAGCGCAGCCACGATGGGCCGCCGTTGGAAGAGGTGCACTACTTCCTGTGCAGCTTCAAAGCCGATGTGGAACGCCTTGCCAAACTGGTGCGC
GGACACTGGAGTGTTGAAAACCGCTGCCACTGGGTGCTGGATGTGACCTTCAATGAGGACCACTGCCAGGTGAGGGACCGCAACGCGGCCCACAACCTCA
CCATCCTGCGCGAAATGGTCATCCCCACCCTGCACCGGCACCCAGCAAAAGTCAGCCTGCGCAGGAAGCGCAAACTCGCCACCATGGACCCGGCCTTCAG
GCTCCAAATGCTAGGCCTCCTTCATGCGTAAGCCCTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1143 bp | 380 aa | 89 | 1231 | + | No |
Chemistry : Unknow
ORF sequence :
MTHSLPPQGTLEALRAKFAQIHDPRQAGKVRHRIDEVLIIAFCSTLCDGESYLDMGDFAQSQLSWLQSFLPLKHGAPSHDVFRNVLMAIQPQALLEVLTG
WCGDLEGRHIAIDGKALRGTHNAETGRHLVHLLRAWVDDYHLSAGQITCHEKSNEIEAIPRLLESLQLKGATVTIDAMGTQAHIAEQITGAGADYVLALK
ANHPRAHETVRKHFTEAERLDLSPSHHRKSVTLELSHGRCERREYTITEELDWYHKSWKWAGLQSVAQVRRQVQRSHDGPPLEEVHYFLCSFKADVERLA
KLVRGHWSVENRCHWVLDVTFNEDHCQVRDRNAAHNLTILREMVIPTLHRHPAKVSLRRKRKLATMDPAFRLQMLGLLHA
WCGDLEGRHIAIDGKALRGTHNAETGRHLVHLLRAWVDDYHLSAGQITCHEKSNEIEAIPRLLESLQLKGATVTIDAMGTQAHIAEQITGAGADYVLALK
ANHPRAHETVRKHFTEAERLDLSPSHHRKSVTLELSHGRCERREYTITEELDWYHKSWKWAGLQSVAQVRRQVQRSHDGPPLEEVHYFLCSFKADVERLA
KLVRGHWSVENRCHWVLDVTFNEDHCQVRDRNAAHNLTILREMVIPTLHRHPAKVSLRRKRKLATMDPAFRLQMLGLLHA
Blast result :
Comments
ISVsp7 is 55% aa similar to ISAzo3.
There are 5 intact copies of ISVsp7 in the chromosome of Verrucomicrobium spinosum DSM 4136. In addition, there are several degenerate ISVsp7, transposase genes.
There are 5 intact copies of ISVsp7 in the chromosome of Verrucomicrobium spinosum DSM 4136. In addition, there are several degenerate ISVsp7, transposase genes.
References
1]DeBoy, R. (2010) Direct submission