ISVsp5
- Family IS4
- Group IS4Sa
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ABIZ00000000 | ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 1426 bp
Ends
IR Length : 19/26
IRL : CACAGCCGTCCCACAGCGAAACAAAAAGGTGACTGGCGGCCTACCCCACA
IRR : CACAGTCATCCCATAGCCCTGCAAAAGCAGCGCCAGAGGCTTGAGTTGGT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCCCAATAAA | AAGTCTGTT | GTAGAATACT | 9 |
AAAAATGATG | AATTAGGAA | TTAGGAATGA | 9 |
GGCAATGCTT | TTTCCAACT | GACGAAATTG | 9 |
CGTCCTTCAT | AGATTCATG | ATGTGAGCAC | 9 |
CATCTGTATT | GATCAGGCT | TACTTCGCCT | 9 |
AAGATAATAT | ACATGGTAT | TGACAGTTTC | 9 |
CAAGGATCCG | TACCGGTTT | GATTTTTTAG | 9 |
GCAACTCACA | GGTCCACTT | TACTATTCAT | 9 |
GAGGGCACAG | TTTTGATGA | GAAAAATCAT | 9 |
GATTTTTTAG | ACAGAATTT | ACAAAATAAC | 9 |
GGATTTCATA | AAGGGGATA | CTGATTGTCT | 9 |
DNA sequence
CACAGCCGTCCCACAGCGAAACAAAAAGGTGACTGGCGGCCTACCCCACACAGGGTAGGCCTGAGATGAAATTCAAACCAGCCAAAGTCATTGGAAGCGT
TCTGGGGCAGCTTTGCAAGCTCATTCCCGGGCACTTGGTCGCGAACCTCTGCGCTCAACACCACCACGGCAGCCAGCCGCGCACCTTCAGTTCCTGGAGT
CACGTGGTCAGCCTGCTCTACGCGCAACTGACACACTCCATCAGTCTCAACGATGTGTGCGACAGCTTGAGGCATCATGCCGGGGCCCTCGCTGCCATCC
GCGGAGCGACACCGCCAGCCCGCAACACCCTGTCCCATGCCAATAAGAATCGGGACAGCGACCTGATGGAGACCCTCTTTTGGAAGATGTTGGATCATCT
CCAGCATCGGCACCCCGGGTTTGGCCTGCGCTATGAAGGACTGCCCCGGCGGTTTAGACGGGCCATCTACGCCATCGACTCCAGCACCATCGCCCTGGTG
GCCAACTGTATGAGTTGGGCCAAGCACCGGCAGCGCAAGGCGGCGGCCAAGCTCCATTTGCGTCTCAACCTGCAAACCTTCCTGCCAGCCTTTGCCATCA
TCGAAGAAGCCTCTCATCATGATGACTCGCGCTCCCGCGCGCTTTGTGCCAGCCTCAAAGACGGGGAAATTGCCTTGTTTGACAAGGCTTACATCAACTT
TGCCCACCTCTGGGAGTTGACCGGGCGGGGCATCTTCTGGGTCACCCGTGCCAAGGACAACATGAGCTACCGGGTGACGCGCAAGCTCCAGGCACGGCCG
CAAGGCAAGGTGCTGCGCGATGACCTCATTGTGCTCAAAGGAGCCAGGAGCCTTTCGCAACATCCCGGCCCGCTGCGCCGGGTGGAGATGCTCGTGGAGC
TTGACGGCAAGGAAGTGCGCATGGCCTTTATCACCAACCAGACAGAATGGGCCGCCAGCACGGTAGGAGAACTCTACCAGAGCCGCTGGGGCATTGAAGT
GTTCTTCAAGCAGATCAAGCAAACGCTCTGCATCTGTGATTTTTTGGGACATAGCAAAAACGCGATCCGCTGGCAGCTCTGGGCGGCCCTGTTGCTCTAT
GTGCTGCTGCGGTTCCTGGCACAAGTATCGGGCTGGCCGCACAGCTTCACCCGCCTCTTCACGATGATCCGAGGGGTGACTTGGAGCCGGGTGGATCTGC
TCAGATTGCTGGCGTTCTATGGGACAGCAGGCGGTCCATGGAAGATGCGAGCCAGCCCGCAAAGCGTGTATCTGCCTGGGCTGGAGCCCCCCGTCTATGG
GACAGCAGGCGTCGCATAACGGAGCAGGACCGCCCCGTTTGAGAAATCACTTTCGCAAAAGGCACTTCAAAACATCACCAACTCAAGCCTCTGGCGCTGC
TTTTGCAGGGCTATGGGATGACTGTG
TCTGGGGCAGCTTTGCAAGCTCATTCCCGGGCACTTGGTCGCGAACCTCTGCGCTCAACACCACCACGGCAGCCAGCCGCGCACCTTCAGTTCCTGGAGT
CACGTGGTCAGCCTGCTCTACGCGCAACTGACACACTCCATCAGTCTCAACGATGTGTGCGACAGCTTGAGGCATCATGCCGGGGCCCTCGCTGCCATCC
GCGGAGCGACACCGCCAGCCCGCAACACCCTGTCCCATGCCAATAAGAATCGGGACAGCGACCTGATGGAGACCCTCTTTTGGAAGATGTTGGATCATCT
CCAGCATCGGCACCCCGGGTTTGGCCTGCGCTATGAAGGACTGCCCCGGCGGTTTAGACGGGCCATCTACGCCATCGACTCCAGCACCATCGCCCTGGTG
GCCAACTGTATGAGTTGGGCCAAGCACCGGCAGCGCAAGGCGGCGGCCAAGCTCCATTTGCGTCTCAACCTGCAAACCTTCCTGCCAGCCTTTGCCATCA
TCGAAGAAGCCTCTCATCATGATGACTCGCGCTCCCGCGCGCTTTGTGCCAGCCTCAAAGACGGGGAAATTGCCTTGTTTGACAAGGCTTACATCAACTT
TGCCCACCTCTGGGAGTTGACCGGGCGGGGCATCTTCTGGGTCACCCGTGCCAAGGACAACATGAGCTACCGGGTGACGCGCAAGCTCCAGGCACGGCCG
CAAGGCAAGGTGCTGCGCGATGACCTCATTGTGCTCAAAGGAGCCAGGAGCCTTTCGCAACATCCCGGCCCGCTGCGCCGGGTGGAGATGCTCGTGGAGC
TTGACGGCAAGGAAGTGCGCATGGCCTTTATCACCAACCAGACAGAATGGGCCGCCAGCACGGTAGGAGAACTCTACCAGAGCCGCTGGGGCATTGAAGT
GTTCTTCAAGCAGATCAAGCAAACGCTCTGCATCTGTGATTTTTTGGGACATAGCAAAAACGCGATCCGCTGGCAGCTCTGGGCGGCCCTGTTGCTCTAT
GTGCTGCTGCGGTTCCTGGCACAAGTATCGGGCTGGCCGCACAGCTTCACCCGCCTCTTCACGATGATCCGAGGGGTGACTTGGAGCCGGGTGGATCTGC
TCAGATTGCTGGCGTTCTATGGGACAGCAGGCGGTCCATGGAAGATGCGAGCCAGCCCGCAAAGCGTGTATCTGCCTGGGCTGGAGCCCCCCGTCTATGG
GACAGCAGGCGTCGCATAACGGAGCAGGACCGCCCCGTTTGAGAAATCACTTTCGCAAAAGGCACTTCAAAACATCACCAACTCAAGCCTCTGGCGCTGC
TTTTGCAGGGCTATGGGATGACTGTG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1254 bp | 417 aa | 66 | 1319 | + | No |
Chemistry : DDE
ORF sequence :
MKFKPAKVIGSVLGQLCKLIPGHLVANLCAQHHHGSQPRTFSSWSHVVSLLYAQLTHSISLNDVCDSLRHHAGALAAIRGATPPARNTLSHANKNRDSDL
METLFWKMLDHLQHRHPGFGLRYEGLPRRFRRAIYAIDSSTIALVANCMSWAKHRQRKAAAKLHLRLNLQTFLPAFAIIEEASHHDDSRSRALCASLKDG
EIALFDKAYINFAHLWELTGRGIFWVTRAKDNMSYRVTRKLQARPQGKVLRDDLIVLKGARSLSQHPGPLRRVEMLVELDGKEVRMAFITNQTEWAASTV
GELYQSRWGIEVFFKQIKQTLCICDFLGHSKNAIRWQLWAALLLYVLLRFLAQVSGWPHSFTRLFTMIRGVTWSRVDLLRLLAFYGTAGGPWKMRASPQS
VYLPGLEPPVYGTAGVA
METLFWKMLDHLQHRHPGFGLRYEGLPRRFRRAIYAIDSSTIALVANCMSWAKHRQRKAAAKLHLRLNLQTFLPAFAIIEEASHHDDSRSRALCASLKDG
EIALFDKAYINFAHLWELTGRGIFWVTRAKDNMSYRVTRKLQARPQGKVLRDDLIVLKGARSLSQHPGPLRRVEMLVELDGKEVRMAFITNQTEWAASTV
GELYQSRWGIEVFFKQIKQTLCICDFLGHSKNAIRWQLWAALLLYVLLRFLAQVSGWPHSFTRLFTMIRGVTWSRVDLLRLLAFYGTAGGPWKMRASPQS
VYLPGLEPPVYGTAGVA
Blast result :
Comments
ISVsp5 is 52% aa similar to ISPca1.
There are 11 intact copies of ISVsp5 in the chromosome of Verrucomicrobium spinosum DSM 4136. There are also at least 2 remnants including a truncated ISVsp5 transposase gene.
There are 11 intact copies of ISVsp5 in the chromosome of Verrucomicrobium spinosum DSM 4136. There are also at least 2 remnants including a truncated ISVsp5 transposase gene.
References
1] DeBoy, R. (2010) Direct submission