ISVsp5

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ABIZ00000000 ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 1426 bp

Ends


IR Length : 19/26

IRL : CACAGCCGTCCCACAGCGAAACAAAAAGGTGACTGGCGGCCTACCCCACA
IRR : CACAGTCATCCCATAGCCCTGCAAAAGCAGCGCCAGAGGCTTGAGTTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCCAATAAAAAGTCTGTTGTAGAATACT9
AAAAATGATGAATTAGGAATTAGGAATGA9
GGCAATGCTTTTTCCAACTGACGAAATTG9
CGTCCTTCATAGATTCATGATGTGAGCAC9
CATCTGTATTGATCAGGCTTACTTCGCCT9
AAGATAATATACATGGTATTGACAGTTTC9
CAAGGATCCGTACCGGTTTGATTTTTTAG9
GCAACTCACAGGTCCACTTTACTATTCAT9
GAGGGCACAGTTTTGATGAGAAAAATCAT9
GATTTTTTAGACAGAATTTACAAAATAAC9
GGATTTCATAAAGGGGATACTGATTGTCT9

DNA sequence

CACAGCCGTCCCACAGCGAAACAAAAAGGTGACTGGCGGCCTACCCCACACAGGGTAGGCCTGAGATGAAATTCAAACCAGCCAAAGTCATTGGAAGCGT
TCTGGGGCAGCTTTGCAAGCTCATTCCCGGGCACTTGGTCGCGAACCTCTGCGCTCAACACCACCACGGCAGCCAGCCGCGCACCTTCAGTTCCTGGAGT
CACGTGGTCAGCCTGCTCTACGCGCAACTGACACACTCCATCAGTCTCAACGATGTGTGCGACAGCTTGAGGCATCATGCCGGGGCCCTCGCTGCCATCC
GCGGAGCGACACCGCCAGCCCGCAACACCCTGTCCCATGCCAATAAGAATCGGGACAGCGACCTGATGGAGACCCTCTTTTGGAAGATGTTGGATCATCT
CCAGCATCGGCACCCCGGGTTTGGCCTGCGCTATGAAGGACTGCCCCGGCGGTTTAGACGGGCCATCTACGCCATCGACTCCAGCACCATCGCCCTGGTG
GCCAACTGTATGAGTTGGGCCAAGCACCGGCAGCGCAAGGCGGCGGCCAAGCTCCATTTGCGTCTCAACCTGCAAACCTTCCTGCCAGCCTTTGCCATCA
TCGAAGAAGCCTCTCATCATGATGACTCGCGCTCCCGCGCGCTTTGTGCCAGCCTCAAAGACGGGGAAATTGCCTTGTTTGACAAGGCTTACATCAACTT
TGCCCACCTCTGGGAGTTGACCGGGCGGGGCATCTTCTGGGTCACCCGTGCCAAGGACAACATGAGCTACCGGGTGACGCGCAAGCTCCAGGCACGGCCG
CAAGGCAAGGTGCTGCGCGATGACCTCATTGTGCTCAAAGGAGCCAGGAGCCTTTCGCAACATCCCGGCCCGCTGCGCCGGGTGGAGATGCTCGTGGAGC
TTGACGGCAAGGAAGTGCGCATGGCCTTTATCACCAACCAGACAGAATGGGCCGCCAGCACGGTAGGAGAACTCTACCAGAGCCGCTGGGGCATTGAAGT
GTTCTTCAAGCAGATCAAGCAAACGCTCTGCATCTGTGATTTTTTGGGACATAGCAAAAACGCGATCCGCTGGCAGCTCTGGGCGGCCCTGTTGCTCTAT
GTGCTGCTGCGGTTCCTGGCACAAGTATCGGGCTGGCCGCACAGCTTCACCCGCCTCTTCACGATGATCCGAGGGGTGACTTGGAGCCGGGTGGATCTGC
TCAGATTGCTGGCGTTCTATGGGACAGCAGGCGGTCCATGGAAGATGCGAGCCAGCCCGCAAAGCGTGTATCTGCCTGGGCTGGAGCCCCCCGTCTATGG
GACAGCAGGCGTCGCATAACGGAGCAGGACCGCCCCGTTTGAGAAATCACTTTCGCAAAAGGCACTTCAAAACATCACCAACTCAAGCCTCTGGCGCTGC
TTTTGCAGGGCTATGGGATGACTGTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa661319+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKFKPAKVIGSVLGQLCKLIPGHLVANLCAQHHHGSQPRTFSSWSHVVSLLYAQLTHSISLNDVCDSLRHHAGALAAIRGATPPARNTLSHANKNRDSDL
METLFWKMLDHLQHRHPGFGLRYEGLPRRFRRAIYAIDSSTIALVANCMSWAKHRQRKAAAKLHLRLNLQTFLPAFAIIEEASHHDDSRSRALCASLKDG
EIALFDKAYINFAHLWELTGRGIFWVTRAKDNMSYRVTRKLQARPQGKVLRDDLIVLKGARSLSQHPGPLRRVEMLVELDGKEVRMAFITNQTEWAASTV
GELYQSRWGIEVFFKQIKQTLCICDFLGHSKNAIRWQLWAALLLYVLLRFLAQVSGWPHSFTRLFTMIRGVTWSRVDLLRLLAFYGTAGGPWKMRASPQS
VYLPGLEPPVYGTAGVA

 

Blast result :
Comments
ISVsp5 is 52% aa similar to ISPca1.
There are 11 intact copies of ISVsp5 in the chromosome of Verrucomicrobium spinosum DSM 4136. There are also at least 2 remnants including a truncated ISVsp5 transposase gene.
References
1] DeBoy, R. (2010) Direct submission