ISVsp1
- Family IS1634
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Verrucomicrobium spinosum | Verrucomicrobium spinosum DSM 4136 |
DNA section
IS Length : 2082 bp
Ends
IR Length : 18/21
IRL : CCCAACTTGGCGGATTCGCGGCCGATTTTGGCATTTTTGGGCCTGCCATC
IRR : CCCGACTTGGCGGATTGCCGGGGTTGATGATCCTCCAGCCCTTGATTTTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CCTGCCTGC | CTAC | GGATTTCTCG | 4 |
ACGAAGGGG | CTAA | GTCAGCAAAT | 4 |
CGTGACCGC | CTAA | AGGCGGAACT | 4 |
TTGTTCTTG | CTAG | ACGCTGCGCC | 4 |
DNA sequence
CCCAACTTGGCGGATTCGCGGCCGATTTTGGCATTTTTGGGCCTGCCATCGAGCTGCAACCCTTGATTTTGCGAGGGTCCGTTTCAAAAACGGCTTGTAG
TGCAGACCTTGGTGGTTGCACGCGCGTTTTGCTGGCTAACTTCTTGGGCCATCATGTTCCTGCGTTCCACCAAACGGCTCAAGGATGGCAAAGAGCACCT
CTACTGGAGCATCGTCGAAAACCGGCGGATCAGTTCCCGGCAGGTGGTCCAGCGGCACGTCCTTTATCTGGGTGAACTCAATGGTCGTCAGGAAGCCTCC
TGGCGCAAGACGGTTGAACTCTTCGGCAAAGACCAGAGCGCTCCTCAACAGGTGGCCCTCTTTGCCGAAGATCATGCTCCCGAGCAGGTCGGTGTTGATG
AGTTGCCCATTGTGCGTCTGCGCCTTGCGGCCATGCGGCTGGAACGGCCCCGGCAATGGGGGGCCTGCTGGCTGGCCTGCCTGCTCTGGGAGCAGTTGCT
CCTGGCTGACTTCTGGCGACCACGTCTGCCGCCCAGTCGTGAGGGCACCCGCTGGGATCTGGTGCTCCAGACCCTGGTGCTCTACCGGCTCATCGAACCG
GGCAGCGAATGGCGGCTGCACCGCCACTGGTTTGACCAGACGGCCATTGCCGACCTGCTGGGCGCGGACTTCGCCCTGGCCGAGATCCACCGTCTCTACG
AATGCCATGACAAGATCCTGGCCCACAAGCGTGCCTTGTTTGATCATCTCACCGAGCGCTGGCGCGACCTGTTTGGAGCCCGTTATGAGGTGCTGCTGTA
TGATCTGACCAGCACCTACTTTGAAAGCAACCCGCCGGACAACCCCACCGGTCTGCGCCGCTTTGGTTACAGCCGCGACAAGCGCAGCGACTGCGTGCAG
GTGGTCATTGCCCTCATCGTCACCCCCGAAGGCTTCCCGCTGGCCTATGAGGTGCTGCCGGGCAACACCACCGACAAGAGCACCCTCAAGAGCTTCCTGG
CCAGGATCGAAGACCAGTACGGCAAGGCCCAACGCATCTGGGTCATGGACCGGGGCATCCCGACTGAAGAGACCCTTGAACAGATGCGGCAGAGCACTCC
GCCGGTGAGCTATCTGGTGGGCACGCCCAAAGGACGCTTGAGCAAGCTGGAGGAGTCACTGGCCCGGCAACCCTGGCAGCAGGCCCGCCCCCAGGTGCGC
GTCAAACTGCTGCCGCATGAAGGGGAGACTTATGTACTGGCCCAAAGCCAGGACCGTGTGGCCAAGGAACGCTCGATGCGTCGGCGCCGGCTGCGCAAGT
ATCTGGATGCCCTGGAAGGGTTGCGCAAGCGCAAGCGCCCCCTGCACCGTGATGCGATGTACGAAGCGTTGGGTGCCGCCAAAAAGGAGGCGGGGCGGGA
TGCGCGCTTTGTCAAGGTCAGCGTGCAGTTGCAGCCAGCAACAGGCAAAGACCAGAGCAAGAGCAAGAGCAAGGGCAAGGGCCGGCAGCGGGCGACTCTG
AGCTGGGAGCTGGACCGCAAGCTGTTGCGTGAAGGATGGCGGCGGGAGGGGCGTTACCTGCTGCGCACCAATTTGACGGAGACCGATCCCGCGAAGCTCT
GGGAGTATTACCTGCAACTGGTGGAGGTGGAGCAGGCGTTCAAGGAGCTCAAACACGATCTGGGGATCCGGCCGGTGCACCACCAGTTGGACCATCGCAT
TGAAGCGCACCTCTTCGTGTCGTTCCTGGCGTACTGCCTGCAGGTGACGCTCAAGGCGCGCTTGAGGCTGACGGCCAGCGGGCTGACACCGCGAAGTGTG
CTGGAGAAGTTCGCGACGGTGCAGATGCTCGATGTGCATCTGCCCACAACTGATGGAAGGGAGGTGGTGATGAGCCGCCACACGCAGCCTTCAAAGGATC
TGCAACTGCTGCTGGACCAGCTCAAGATCACGCTGCCTGAACAGGCCCCGCCCAAAATCACTGGTTGAAGCAGACCCCGGAAGGTCGCGAAATGGCGGAA
GATGTAGTGAAGACTTTTTGAACCCAATGTCGCAAAATCAAGGGCTGGAGGATCATCAACCCCGGCAATCCGCCAAGTCGGG
TGCAGACCTTGGTGGTTGCACGCGCGTTTTGCTGGCTAACTTCTTGGGCCATCATGTTCCTGCGTTCCACCAAACGGCTCAAGGATGGCAAAGAGCACCT
CTACTGGAGCATCGTCGAAAACCGGCGGATCAGTTCCCGGCAGGTGGTCCAGCGGCACGTCCTTTATCTGGGTGAACTCAATGGTCGTCAGGAAGCCTCC
TGGCGCAAGACGGTTGAACTCTTCGGCAAAGACCAGAGCGCTCCTCAACAGGTGGCCCTCTTTGCCGAAGATCATGCTCCCGAGCAGGTCGGTGTTGATG
AGTTGCCCATTGTGCGTCTGCGCCTTGCGGCCATGCGGCTGGAACGGCCCCGGCAATGGGGGGCCTGCTGGCTGGCCTGCCTGCTCTGGGAGCAGTTGCT
CCTGGCTGACTTCTGGCGACCACGTCTGCCGCCCAGTCGTGAGGGCACCCGCTGGGATCTGGTGCTCCAGACCCTGGTGCTCTACCGGCTCATCGAACCG
GGCAGCGAATGGCGGCTGCACCGCCACTGGTTTGACCAGACGGCCATTGCCGACCTGCTGGGCGCGGACTTCGCCCTGGCCGAGATCCACCGTCTCTACG
AATGCCATGACAAGATCCTGGCCCACAAGCGTGCCTTGTTTGATCATCTCACCGAGCGCTGGCGCGACCTGTTTGGAGCCCGTTATGAGGTGCTGCTGTA
TGATCTGACCAGCACCTACTTTGAAAGCAACCCGCCGGACAACCCCACCGGTCTGCGCCGCTTTGGTTACAGCCGCGACAAGCGCAGCGACTGCGTGCAG
GTGGTCATTGCCCTCATCGTCACCCCCGAAGGCTTCCCGCTGGCCTATGAGGTGCTGCCGGGCAACACCACCGACAAGAGCACCCTCAAGAGCTTCCTGG
CCAGGATCGAAGACCAGTACGGCAAGGCCCAACGCATCTGGGTCATGGACCGGGGCATCCCGACTGAAGAGACCCTTGAACAGATGCGGCAGAGCACTCC
GCCGGTGAGCTATCTGGTGGGCACGCCCAAAGGACGCTTGAGCAAGCTGGAGGAGTCACTGGCCCGGCAACCCTGGCAGCAGGCCCGCCCCCAGGTGCGC
GTCAAACTGCTGCCGCATGAAGGGGAGACTTATGTACTGGCCCAAAGCCAGGACCGTGTGGCCAAGGAACGCTCGATGCGTCGGCGCCGGCTGCGCAAGT
ATCTGGATGCCCTGGAAGGGTTGCGCAAGCGCAAGCGCCCCCTGCACCGTGATGCGATGTACGAAGCGTTGGGTGCCGCCAAAAAGGAGGCGGGGCGGGA
TGCGCGCTTTGTCAAGGTCAGCGTGCAGTTGCAGCCAGCAACAGGCAAAGACCAGAGCAAGAGCAAGAGCAAGGGCAAGGGCCGGCAGCGGGCGACTCTG
AGCTGGGAGCTGGACCGCAAGCTGTTGCGTGAAGGATGGCGGCGGGAGGGGCGTTACCTGCTGCGCACCAATTTGACGGAGACCGATCCCGCGAAGCTCT
GGGAGTATTACCTGCAACTGGTGGAGGTGGAGCAGGCGTTCAAGGAGCTCAAACACGATCTGGGGATCCGGCCGGTGCACCACCAGTTGGACCATCGCAT
TGAAGCGCACCTCTTCGTGTCGTTCCTGGCGTACTGCCTGCAGGTGACGCTCAAGGCGCGCTTGAGGCTGACGGCCAGCGGGCTGACACCGCGAAGTGTG
CTGGAGAAGTTCGCGACGGTGCAGATGCTCGATGTGCATCTGCCCACAACTGATGGAAGGGAGGTGGTGATGAGCCGCCACACGCAGCCTTCAAAGGATC
TGCAACTGCTGCTGGACCAGCTCAAGATCACGCTGCCTGAACAGGCCCCGCCCAAAATCACTGGTTGAAGCAGACCCCGGAAGGTCGCGAAATGGCGGAA
GATGTAGTGAAGACTTTTTGAACCCAATGTCGCAAAATCAAGGGCTGGAGGATCATCAACCCCGGCAATCCGCCAAGTCGGG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1869 bp | 622 aa | 100 | 1968 | + | No |
Chemistry : DDE
ORF sequence :
MQTLVVARAFCWLTSWAIMFLRSTKRLKDGKEHLYWSIVENRRISSRQVVQRHVLYLGELNGRQEASWRKTVELFGKDQSAPQQVALFAEDHAPEQVGVD
ELPIVRLRLAAMRLERPRQWGACWLACLLWEQLLLADFWRPRLPPSREGTRWDLVLQTLVLYRLIEPGSEWRLHRHWFDQTAIADLLGADFALAEIHRLY
ECHDKILAHKRALFDHLTERWRDLFGARYEVLLYDLTSTYFESNPPDNPTGLRRFGYSRDKRSDCVQVVIALIVTPEGFPLAYEVLPGNTTDKSTLKSFL
ARIEDQYGKAQRIWVMDRGIPTEETLEQMRQSTPPVSYLVGTPKGRLSKLEESLARQPWQQARPQVRVKLLPHEGETYVLAQSQDRVAKERSMRRRRLRK
YLDALEGLRKRKRPLHRDAMYEALGAAKKEAGRDARFVKVSVQLQPATGKDQSKSKSKGKGRQRATLSWELDRKLLREGWRREGRYLLRTNLTETDPAKL
WEYYLQLVEVEQAFKELKHDLGIRPVHHQLDHRIEAHLFVSFLAYCLQVTLKARLRLTASGLTPRSVLEKFATVQMLDVHLPTTDGREVVMSRHTQPSKD
LQLLLDQLKITLPEQAPPKITG
ELPIVRLRLAAMRLERPRQWGACWLACLLWEQLLLADFWRPRLPPSREGTRWDLVLQTLVLYRLIEPGSEWRLHRHWFDQTAIADLLGADFALAEIHRLY
ECHDKILAHKRALFDHLTERWRDLFGARYEVLLYDLTSTYFESNPPDNPTGLRRFGYSRDKRSDCVQVVIALIVTPEGFPLAYEVLPGNTTDKSTLKSFL
ARIEDQYGKAQRIWVMDRGIPTEETLEQMRQSTPPVSYLVGTPKGRLSKLEESLARQPWQQARPQVRVKLLPHEGETYVLAQSQDRVAKERSMRRRRLRK
YLDALEGLRKRKRPLHRDAMYEALGAAKKEAGRDARFVKVSVQLQPATGKDQSKSKSKGKGRQRATLSWELDRKLLREGWRREGRYLLRTNLTETDPAKL
WEYYLQLVEVEQAFKELKHDLGIRPVHHQLDHRIEAHLFVSFLAYCLQVTLKARLRLTASGLTPRSVLEKFATVQMLDVHLPTTDGREVVMSRHTQPSKD
LQLLLDQLKITLPEQAPPKITG
Blast result :
Comments
There are 4 intact copies of ISVsp1 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp1 is closely related to ISVsp2 at the protein level.
ISVsp1 is 45% aa similat to ISAzo6.
Genome in progress. Accession number: NZ_ABIZ00000000.
ISVsp1 is 45% aa similat to ISAzo6.
Genome in progress. Accession number: NZ_ABIZ00000000.
References
1] DeBoy, R. (2010) Direct submission