ISVsp1

  • Family IS1634
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
ND Verrucomicrobium spinosum
Verrucomicrobium spinosum DSM 4136
DNA section
IS Length : 2082 bp

Ends


IR Length : 18/21

IRL : CCCAACTTGGCGGATTCGCGGCCGATTTTGGCATTTTTGGGCCTGCCATC
IRR : CCCGACTTGGCGGATTGCCGGGGTTGATGATCCTCCAGCCCTTGATTTTG

Insertion site


Left flankDirect repeatRight flankDR Length
CCTGCCTGCCTACGGATTTCTCG4
ACGAAGGGGCTAAGTCAGCAAAT4
CGTGACCGCCTAAAGGCGGAACT4
TTGTTCTTGCTAGACGCTGCGCC4

DNA sequence

CCCAACTTGGCGGATTCGCGGCCGATTTTGGCATTTTTGGGCCTGCCATCGAGCTGCAACCCTTGATTTTGCGAGGGTCCGTTTCAAAAACGGCTTGTAG
TGCAGACCTTGGTGGTTGCACGCGCGTTTTGCTGGCTAACTTCTTGGGCCATCATGTTCCTGCGTTCCACCAAACGGCTCAAGGATGGCAAAGAGCACCT
CTACTGGAGCATCGTCGAAAACCGGCGGATCAGTTCCCGGCAGGTGGTCCAGCGGCACGTCCTTTATCTGGGTGAACTCAATGGTCGTCAGGAAGCCTCC
TGGCGCAAGACGGTTGAACTCTTCGGCAAAGACCAGAGCGCTCCTCAACAGGTGGCCCTCTTTGCCGAAGATCATGCTCCCGAGCAGGTCGGTGTTGATG
AGTTGCCCATTGTGCGTCTGCGCCTTGCGGCCATGCGGCTGGAACGGCCCCGGCAATGGGGGGCCTGCTGGCTGGCCTGCCTGCTCTGGGAGCAGTTGCT
CCTGGCTGACTTCTGGCGACCACGTCTGCCGCCCAGTCGTGAGGGCACCCGCTGGGATCTGGTGCTCCAGACCCTGGTGCTCTACCGGCTCATCGAACCG
GGCAGCGAATGGCGGCTGCACCGCCACTGGTTTGACCAGACGGCCATTGCCGACCTGCTGGGCGCGGACTTCGCCCTGGCCGAGATCCACCGTCTCTACG
AATGCCATGACAAGATCCTGGCCCACAAGCGTGCCTTGTTTGATCATCTCACCGAGCGCTGGCGCGACCTGTTTGGAGCCCGTTATGAGGTGCTGCTGTA
TGATCTGACCAGCACCTACTTTGAAAGCAACCCGCCGGACAACCCCACCGGTCTGCGCCGCTTTGGTTACAGCCGCGACAAGCGCAGCGACTGCGTGCAG
GTGGTCATTGCCCTCATCGTCACCCCCGAAGGCTTCCCGCTGGCCTATGAGGTGCTGCCGGGCAACACCACCGACAAGAGCACCCTCAAGAGCTTCCTGG
CCAGGATCGAAGACCAGTACGGCAAGGCCCAACGCATCTGGGTCATGGACCGGGGCATCCCGACTGAAGAGACCCTTGAACAGATGCGGCAGAGCACTCC
GCCGGTGAGCTATCTGGTGGGCACGCCCAAAGGACGCTTGAGCAAGCTGGAGGAGTCACTGGCCCGGCAACCCTGGCAGCAGGCCCGCCCCCAGGTGCGC
GTCAAACTGCTGCCGCATGAAGGGGAGACTTATGTACTGGCCCAAAGCCAGGACCGTGTGGCCAAGGAACGCTCGATGCGTCGGCGCCGGCTGCGCAAGT
ATCTGGATGCCCTGGAAGGGTTGCGCAAGCGCAAGCGCCCCCTGCACCGTGATGCGATGTACGAAGCGTTGGGTGCCGCCAAAAAGGAGGCGGGGCGGGA
TGCGCGCTTTGTCAAGGTCAGCGTGCAGTTGCAGCCAGCAACAGGCAAAGACCAGAGCAAGAGCAAGAGCAAGGGCAAGGGCCGGCAGCGGGCGACTCTG
AGCTGGGAGCTGGACCGCAAGCTGTTGCGTGAAGGATGGCGGCGGGAGGGGCGTTACCTGCTGCGCACCAATTTGACGGAGACCGATCCCGCGAAGCTCT
GGGAGTATTACCTGCAACTGGTGGAGGTGGAGCAGGCGTTCAAGGAGCTCAAACACGATCTGGGGATCCGGCCGGTGCACCACCAGTTGGACCATCGCAT
TGAAGCGCACCTCTTCGTGTCGTTCCTGGCGTACTGCCTGCAGGTGACGCTCAAGGCGCGCTTGAGGCTGACGGCCAGCGGGCTGACACCGCGAAGTGTG
CTGGAGAAGTTCGCGACGGTGCAGATGCTCGATGTGCATCTGCCCACAACTGATGGAAGGGAGGTGGTGATGAGCCGCCACACGCAGCCTTCAAAGGATC
TGCAACTGCTGCTGGACCAGCTCAAGATCACGCTGCCTGAACAGGCCCCGCCCAAAATCACTGGTTGAAGCAGACCCCGGAAGGTCGCGAAATGGCGGAA
GATGTAGTGAAGACTTTTTGAACCCAATGTCGCAAAATCAAGGGCTGGAGGATCATCAACCCCGGCAATCCGCCAAGTCGGG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1869 bp622 aa1001968+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQTLVVARAFCWLTSWAIMFLRSTKRLKDGKEHLYWSIVENRRISSRQVVQRHVLYLGELNGRQEASWRKTVELFGKDQSAPQQVALFAEDHAPEQVGVD
ELPIVRLRLAAMRLERPRQWGACWLACLLWEQLLLADFWRPRLPPSREGTRWDLVLQTLVLYRLIEPGSEWRLHRHWFDQTAIADLLGADFALAEIHRLY
ECHDKILAHKRALFDHLTERWRDLFGARYEVLLYDLTSTYFESNPPDNPTGLRRFGYSRDKRSDCVQVVIALIVTPEGFPLAYEVLPGNTTDKSTLKSFL
ARIEDQYGKAQRIWVMDRGIPTEETLEQMRQSTPPVSYLVGTPKGRLSKLEESLARQPWQQARPQVRVKLLPHEGETYVLAQSQDRVAKERSMRRRRLRK
YLDALEGLRKRKRPLHRDAMYEALGAAKKEAGRDARFVKVSVQLQPATGKDQSKSKSKGKGRQRATLSWELDRKLLREGWRREGRYLLRTNLTETDPAKL
WEYYLQLVEVEQAFKELKHDLGIRPVHHQLDHRIEAHLFVSFLAYCLQVTLKARLRLTASGLTPRSVLEKFATVQMLDVHLPTTDGREVVMSRHTQPSKD
LQLLLDQLKITLPEQAPPKITG

 

Blast result :
Comments
There are 4 intact copies of ISVsp1 in the chromosome of Verrucomicrobium spinosum DSM 4136. ISVsp1 is closely related to ISVsp2 at the protein level.
ISVsp1 is 45% aa similat to ISAzo6.
Genome in progress. Accession number: NZ_ABIZ00000000.
References
1] DeBoy, R. (2010) Direct submission