ISRssp3
- Family IS6
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMV01000007 | ND | Roseovarius sp. | Roseovarius sp. 217 |
DNA section
IS Length : 810 bp
Ends
IR Length : 20/24
IRL : GGCTTTGTCAGGTTATTAACGCGCCCAGGCTGCACGCATAGCCATCTTTC
IRR : GGCTTTGTCAGGTTGTTATGTCGCGACGTGACCAAGATCCGCGTCCCGAT
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| ACGCCTCGAC | AGTTAGACCT | 0 |
DNA sequence
GGCTTTGTCAGGTTATTAACGCGCCCAGGCTGCACGCATAGCCATCTTTCATGATCAGCAAAGTTTCACAGCCTCGCCTGAAAGCCTTCCGGTTCCCTCG
GTCCATCATCTCCTATGCCGTTTGGGCGTACCATCGGTTTGCCCTGAGCCTGCGCGATCTCGAGGATTTGTTGGTCGAACGGGGCGTAAGCGTTTCGTAT
GAAAGCATCCGAGTGTGGTGCCAACGGTTCAGAACGCTGATAGCGGCCAAGATCCGTCACAACCGCCCAGTTCCTGCCGACAAATGGCACCTCGATGAGG
TCGTGATTTCAGTTCGAGGGCGAAAACATTGGCTTTGGCGAGCGGTCGACGCCAACGGAGACGTGCTGGAGATCCTGATGCAAAGCCGCAGAAATGCCCA
TGCTGCCAAGCGTTTCCTGATGAAGTTGATGAAGCGATGGGGTGTGCCACGCGCGCTCGTGACAGACAAACTGCGCAGTTATGGCGTGGCCGTCCGTGAC
CTTTGCCCAAGCGTCGATCATCGTTCCCACAAGGGGTTGAACAACCGATCCGAGGCGTCGCATCGACCCACACGACGAAGAGAAAAGATCATGGGTCGTT
TCAAATCCCCACACCATGCACAGCGTTTTCTATCCGTCGACGATCAGACTGCCACCATCTTTCGTCCAAAACGCCACCGCCTTTCCGCAGCATCCTACCG
CCAATCCCGGGCTGACGCGTTCAGCCTGTGGAACAACTATGCGGCCGAAATTGCTGCCTGATCGGGACGCGGATCTTGGTCACGTCGCGACATAACAACC
TGACAAAGCC
GTCCATCATCTCCTATGCCGTTTGGGCGTACCATCGGTTTGCCCTGAGCCTGCGCGATCTCGAGGATTTGTTGGTCGAACGGGGCGTAAGCGTTTCGTAT
GAAAGCATCCGAGTGTGGTGCCAACGGTTCAGAACGCTGATAGCGGCCAAGATCCGTCACAACCGCCCAGTTCCTGCCGACAAATGGCACCTCGATGAGG
TCGTGATTTCAGTTCGAGGGCGAAAACATTGGCTTTGGCGAGCGGTCGACGCCAACGGAGACGTGCTGGAGATCCTGATGCAAAGCCGCAGAAATGCCCA
TGCTGCCAAGCGTTTCCTGATGAAGTTGATGAAGCGATGGGGTGTGCCACGCGCGCTCGTGACAGACAAACTGCGCAGTTATGGCGTGGCCGTCCGTGAC
CTTTGCCCAAGCGTCGATCATCGTTCCCACAAGGGGTTGAACAACCGATCCGAGGCGTCGCATCGACCCACACGACGAAGAGAAAAGATCATGGGTCGTT
TCAAATCCCCACACCATGCACAGCGTTTTCTATCCGTCGACGATCAGACTGCCACCATCTTTCGTCCAAAACGCCACCGCCTTTCCGCAGCATCCTACCG
CCAATCCCGGGCTGACGCGTTCAGCCTGTGGAACAACTATGCGGCCGAAATTGCTGCCTGATCGGGACGCGGATCTTGGTCACGTCGCGACATAACAACC
TGACAAAGCC
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 711 bp | 236 aa | 51 | 761 | + | No |
Chemistry : DDE
ORF sequence :
MISKVSQPRLKAFRFPRSIISYAVWAYHRFALSLRDLEDLLVERGVSVSYESIRVWCQRFRTLIAAKIRHNRPVPADKWHLDEVVISVRGRKHWLWRAVD
ANGDVLEILMQSRRNAHAAKRFLMKLMKRWGVPRALVTDKLRSYGVAVRDLCPSVDHRSHKGLNNRSEASHRPTRRREKIMGRFKSPHHAQRFLSVDDQT
ATIFRPKRHRLSAASYRQSRADAFSLWNNYAAEIAA
ANGDVLEILMQSRRNAHAAKRFLMKLMKRWGVPRALVTDKLRSYGVAVRDLCPSVDHRSHKGLNNRSEASHRPTRRREKIMGRFKSPHHAQRFLSVDDQT
ATIFRPKRHRLSAASYRQSRADAFSLWNNYAAEIAA
Blast result :
Comments
ISRssp3 is 79% aa similar to ISPpa9.
References
1] ISfinder annotation (2010)
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.