ISPse1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
GQ868753 | ND | Paracoccus seriniphilus | Paracoccus seriniphilus DSM 14827 |
DNA section
IS Length : 1653 bp
Ends
IR Length : 16
IRL : GAGGCTGTGTGGAAACTGAAGTCCATGGTATACTTCCGCGAGGCAGCGGG
IRR : GAGGCTGTGTGGAAACGTGCTGGCAAAACCTACCTGATGCTGGTTTCCCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GGCTTGTATG | GGCC | AGTTAAAGAA | 4 |
DNA sequence
GAGGCTGTGTGGAAACTGAAGTCCATGGTATACTTCCGCGAGGCAGCGGGAGGCATGGATGGCGGGTTTCATTGATGGCATCGACCGGGAGCAAGCCACG
CTTTTCCCCGAGCGTCTCGAAGATTGGATTGGGGAGGATCATCTGGTCCGTGTTGTCGACCTCTTCGTCGATGAGCTCGATCTTCTCGCGCTCGGGTTCG
GACGCTGTGTGCCTGCTCGAACCGGTCGCCCGGGCTACCATCCATCCGTCCTCCTGAAGCTCTTCATCTATGGCTACCTGAACCGGATCCCGTCCAGCCG
CCGCCTGGAACGCGAAGCCGGTCGCAATGTCGAGCTGATGTGGCTAACCGGTCGCCTGGTGCCCGACCACAAAACCATCTCTGACTTCCGGCGGGACAAT
GGCCCGGCCATCCGCAGGACCTGCGCACAGTTTGTGGAACTTTGCCGCCGGATCGGCGTGCTGAAGGGGGATTGCGTTGCCATCGACGGCAGTAAGTTCA
AGGCAGTGAATAACCGCGACCACAACTTCACGAAGAACAAGATCGCCAGCCGTCTGGCACATCTCGAGAGCGATGTTGAGCGCTACATCGATGAGATGGT
GCGCATAGACCGTCAAGAGGAGGGTAAGGCCCGGGCCGAAAAGGTTGCCCATCTCGCCCGTCGCTATGGCCGCATCCGGCAGGAGATCGCGCGGCTGAAG
TCAATGGAGAAGGCTTTGGCCGATGCGCCCGACGGGCAGATATCCCTGACCGATCCCGATGCCCGCGCCATGTCGACCAGCGCCCGGCACAGCGGCATGG
TCGGCTACAATGTGCAGACAGCGGTCGATACCGAGACGCATCTGGTCGTGGCACACGACGTTACCAATCAGGGTTTCGATCGCGACCAGCTCAGCCCAAT
GGCGACCGCCGCCAAGGAAGCCCTGCAGCGCGACGACCTGCACGCCGTCGCCGACAAGGGATATTTCAGTGGGTCTCAAATCCTGGCTTGCCATCAAGCG
GGGATCACCACGACCGTGCCGCGCCCGGAAACCTCGGGCAACCGGGCCAAAGGTATGTATGTGAAGGCCGATTTTGCCTATGACCCGGCACGCGATGTCT
ATACCTGCCCCGCGGGTGAAGAGTTGACCTACCGCTACACGCGCGAGGAAGACGGGCTGCAGGTCGGTCGCTACTGGACCAATGCCTGTCAGCATTGTCC
GGTTCGGCACCGCTGCACCAGTGGCAAAGAACGCCGGATCACGCGATGGGACCATGAGCATCTGGTCGATGCGATGCGCGAAAGGCTGAGCGGGGACGCG
GACCCGATGACCCTACGCCGCTGCACGGTCGAACACCCGTTCGGCACGATCAAGGCTTGGATGGGGCACACCCATTTCCTGACGCGGAGGCTGAAGAATG
TCAGCACCGAAATGGCGCTCAATGTTCTGGCCTATAATATCAAGCGAGTGATCGCGTTGATTGGCCTCCGGCGCCTGATGCAGGCCATTCCGGCCTGATC
GGGTAGCCGCCCCGGGCTCAGTCGTCACGCTCTGCCCAGCAAGGGCTCATCAGGCCGCCATGCGCGCGAAGGAATGGTCGGAGGTCGCTAAAAACGAGCA
GTGCGGGAAACCAGCATCAGGTAGGTTTTGCCAGCACGTTTCCACACAGCCTC
CTTTTCCCCGAGCGTCTCGAAGATTGGATTGGGGAGGATCATCTGGTCCGTGTTGTCGACCTCTTCGTCGATGAGCTCGATCTTCTCGCGCTCGGGTTCG
GACGCTGTGTGCCTGCTCGAACCGGTCGCCCGGGCTACCATCCATCCGTCCTCCTGAAGCTCTTCATCTATGGCTACCTGAACCGGATCCCGTCCAGCCG
CCGCCTGGAACGCGAAGCCGGTCGCAATGTCGAGCTGATGTGGCTAACCGGTCGCCTGGTGCCCGACCACAAAACCATCTCTGACTTCCGGCGGGACAAT
GGCCCGGCCATCCGCAGGACCTGCGCACAGTTTGTGGAACTTTGCCGCCGGATCGGCGTGCTGAAGGGGGATTGCGTTGCCATCGACGGCAGTAAGTTCA
AGGCAGTGAATAACCGCGACCACAACTTCACGAAGAACAAGATCGCCAGCCGTCTGGCACATCTCGAGAGCGATGTTGAGCGCTACATCGATGAGATGGT
GCGCATAGACCGTCAAGAGGAGGGTAAGGCCCGGGCCGAAAAGGTTGCCCATCTCGCCCGTCGCTATGGCCGCATCCGGCAGGAGATCGCGCGGCTGAAG
TCAATGGAGAAGGCTTTGGCCGATGCGCCCGACGGGCAGATATCCCTGACCGATCCCGATGCCCGCGCCATGTCGACCAGCGCCCGGCACAGCGGCATGG
TCGGCTACAATGTGCAGACAGCGGTCGATACCGAGACGCATCTGGTCGTGGCACACGACGTTACCAATCAGGGTTTCGATCGCGACCAGCTCAGCCCAAT
GGCGACCGCCGCCAAGGAAGCCCTGCAGCGCGACGACCTGCACGCCGTCGCCGACAAGGGATATTTCAGTGGGTCTCAAATCCTGGCTTGCCATCAAGCG
GGGATCACCACGACCGTGCCGCGCCCGGAAACCTCGGGCAACCGGGCCAAAGGTATGTATGTGAAGGCCGATTTTGCCTATGACCCGGCACGCGATGTCT
ATACCTGCCCCGCGGGTGAAGAGTTGACCTACCGCTACACGCGCGAGGAAGACGGGCTGCAGGTCGGTCGCTACTGGACCAATGCCTGTCAGCATTGTCC
GGTTCGGCACCGCTGCACCAGTGGCAAAGAACGCCGGATCACGCGATGGGACCATGAGCATCTGGTCGATGCGATGCGCGAAAGGCTGAGCGGGGACGCG
GACCCGATGACCCTACGCCGCTGCACGGTCGAACACCCGTTCGGCACGATCAAGGCTTGGATGGGGCACACCCATTTCCTGACGCGGAGGCTGAAGAATG
TCAGCACCGAAATGGCGCTCAATGTTCTGGCCTATAATATCAAGCGAGTGATCGCGTTGATTGGCCTCCGGCGCCTGATGCAGGCCATTCCGGCCTGATC
GGGTAGCCGCCCCGGGCTCAGTCGTCACGCTCTGCCCAGCAAGGGCTCATCAGGCCGCCATGCGCGCGAAGGAATGGTCGGAGGTCGCTAAAAACGAGCA
GTGCGGGAAACCAGCATCAGGTAGGTTTTGCCAGCACGTTTCCACACAGCCTC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1440 bp | 479 aa | 59 | 1498 | + | No |
Chemistry : DDE
ORF sequence :
MAGFIDGIDREQATLFPERLEDWIGEDHLVRVVDLFVDELDLLALGFGRCVPARTGRPGYHPSVLLKLFIYGYLNRIPSSRRLEREAGRNVELMWLTGRL
VPDHKTISDFRRDNGPAIRRTCAQFVELCRRIGVLKGDCVAIDGSKFKAVNNRDHNFTKNKIASRLAHLESDVERYIDEMVRIDRQEEGKARAEKVAHLA
RRYGRIRQEIARLKSMEKALADAPDGQISLTDPDARAMSTSARHSGMVGYNVQTAVDTETHLVVAHDVTNQGFDRDQLSPMATAAKEALQRDDLHAVADK
GYFSGSQILACHQAGITTTVPRPETSGNRAKGMYVKADFAYDPARDVYTCPAGEELTYRYTREEDGLQVGRYWTNACQHCPVRHRCTSGKERRITRWDHE
HLVDAMRERLSGDADPMTLRRCTVEHPFGTIKAWMGHTHFLTRRLKNVSTEMALNVLAYNIKRVIALIGLRRLMQAIPA
VPDHKTISDFRRDNGPAIRRTCAQFVELCRRIGVLKGDCVAIDGSKFKAVNNRDHNFTKNKIASRLAHLESDVERYIDEMVRIDRQEEGKARAEKVAHLA
RRYGRIRQEIARLKSMEKALADAPDGQISLTDPDARAMSTSARHSGMVGYNVQTAVDTETHLVVAHDVTNQGFDRDQLSPMATAAKEALQRDDLHAVADK
GYFSGSQILACHQAGITTTVPRPETSGNRAKGMYVKADFAYDPARDVYTCPAGEELTYRYTREEDGLQVGRYWTNACQHCPVRHRCTSGKERRITRWDHE
HLVDAMRERLSGDADPMTLRRCTVEHPFGTIKAWMGHTHFLTRRLKNVSTEMALNVLAYNIKRVIALIGLRRLMQAIPA
Blast result :
Comments
ISPse1 is 72% aa similar to ISppu16.
ISPse1 has been identified by its transposition into entrapment vector pMAT1 (sacB cassette). As judged from DNA hybridization analysis ISPse1 is present in single copy in P. seriniphilus DSM 14827. Homologous sequence has been also detected by DNA hybridization in P. aestuarii DSM 19484.
ISPse1 has been identified by its transposition into entrapment vector pMAT1 (sacB cassette). As judged from DNA hybridization analysis ISPse1 is present in single copy in P. seriniphilus DSM 14827. Homologous sequence has been also detected by DNA hybridization in P. aestuarii DSM 19484.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277