ISPpa9

  • Family IS6
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
EU909903 ND Paracoccus pantotrophus
Paracoccus pantotrophus DSM 65
DNA section
IS Length : 812 bp

Ends


IR Length : 15

IRL : GGCATTGCCAAGTTGTTGTGTCGTGAAGCGCCTGCTACAGGATCTCGGAT
IRR : GGCATTGCCAAGTTGGGTGATTGTGGGCGCAAAGGGGGGCGAAGCGTGAG

Insertion site


Left flankDirect repeatRight flankDR Length

DNA sequence

GGCATTGCCAAGTTGTTGTGTCGTGAAGCGCCTGCTACAGGATCTCGGATGAAAACGCCATCATCCATGCCGCGCCTGAAGGGGTTTCGCTTTCCCCGTG
AGATCATTGCCTACGCCGTCTGGGCATATCACCGCTTCGCCCTGAGCGGGGCTGACGTCGAGGACCTTCTGGCAGAGCGCGGCGTGATCGTCAGCCGCGA
GAGCATCAGGCTTTGGGTTAACCGCTTTGGCGCGCAGTTTGCCACCTGCATCCGGCGCGATAGGCCGGGGCCGTCGGACAAGTGGCATCTGGACGAGGTC
GTCATCCCGATACGCGGCAGGAAACACTGGCTCTGGCGGGCGGTTGACGCCAATGGCCACACGCTCGACATCCTCGTGCAAACCCGCCGGAACGCCAGAG
CCGCAAGGCGCTTTCTGGCAAGGCTCATCGCGCAATTCGGCCAGCCGCGTGTGATGATCACCGACAAGCTGCGCAGCTACTTCAAGCCAATCCGGAACCT
GGCTCCCGACGCCGACCACAGGGCACACAAGGGGCTGAACAACCTGGTCGAGGGCTCACACAGACCAACGCGACGGCGAGAGAAGATCATGGGACGCTTC
AAGTCCCAACGACAGGCGCAGAGATTCCTCGCCGCCCATGACCAGATCAACACCCTCTTCCGTCCCCGCCGCTATCGTCTCACCGCATCTTCATACCGCC
ACGCACGGGCTGACGCCTTCAGCCTGTGGAACGACTATGCGCTCGAGATGAACGCATAAGCGCTCACGCTTCGCCCCCCTTTGCGCCCACAATCACCCAA
CTTGGCAATGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
531 bp236 aa49579+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKTPSSMPRLKGFRFPREIIAYAVWAYHRFALSGADVEDLLAERGVIVSRESIRLWVNRFGAQFATCIRRDRPGPSDKWHLDEVVIPIRGRKHWLWRAVD
ANGHTLDILVQTRRNARAARRFLARLIAQFGQPRVMITDKLRSYFKPIRNLAPDADHRAHKGLNNLVEGSHRPTRRREKIMGRFKSQRQAQRFLAAHDQI
NTLFRPRRYRLTASSYRHARADAFSLWNDYALEMNA

 

Blast result :
Comments
ISPpa9 is 67% aa similar to ISRsp9.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277