ISPpa9
- Family IS6
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
EU909903 | ND | Paracoccus pantotrophus | Paracoccus pantotrophus DSM 65 |
DNA section
IS Length : 812 bp
Ends
IR Length : 15
IRL : GGCATTGCCAAGTTGTTGTGTCGTGAAGCGCCTGCTACAGGATCTCGGAT
IRR : GGCATTGCCAAGTTGGGTGATTGTGGGCGCAAAGGGGGGCGAAGCGTGAG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|
DNA sequence
GGCATTGCCAAGTTGTTGTGTCGTGAAGCGCCTGCTACAGGATCTCGGATGAAAACGCCATCATCCATGCCGCGCCTGAAGGGGTTTCGCTTTCCCCGTG
AGATCATTGCCTACGCCGTCTGGGCATATCACCGCTTCGCCCTGAGCGGGGCTGACGTCGAGGACCTTCTGGCAGAGCGCGGCGTGATCGTCAGCCGCGA
GAGCATCAGGCTTTGGGTTAACCGCTTTGGCGCGCAGTTTGCCACCTGCATCCGGCGCGATAGGCCGGGGCCGTCGGACAAGTGGCATCTGGACGAGGTC
GTCATCCCGATACGCGGCAGGAAACACTGGCTCTGGCGGGCGGTTGACGCCAATGGCCACACGCTCGACATCCTCGTGCAAACCCGCCGGAACGCCAGAG
CCGCAAGGCGCTTTCTGGCAAGGCTCATCGCGCAATTCGGCCAGCCGCGTGTGATGATCACCGACAAGCTGCGCAGCTACTTCAAGCCAATCCGGAACCT
GGCTCCCGACGCCGACCACAGGGCACACAAGGGGCTGAACAACCTGGTCGAGGGCTCACACAGACCAACGCGACGGCGAGAGAAGATCATGGGACGCTTC
AAGTCCCAACGACAGGCGCAGAGATTCCTCGCCGCCCATGACCAGATCAACACCCTCTTCCGTCCCCGCCGCTATCGTCTCACCGCATCTTCATACCGCC
ACGCACGGGCTGACGCCTTCAGCCTGTGGAACGACTATGCGCTCGAGATGAACGCATAAGCGCTCACGCTTCGCCCCCCTTTGCGCCCACAATCACCCAA
CTTGGCAATGCC
AGATCATTGCCTACGCCGTCTGGGCATATCACCGCTTCGCCCTGAGCGGGGCTGACGTCGAGGACCTTCTGGCAGAGCGCGGCGTGATCGTCAGCCGCGA
GAGCATCAGGCTTTGGGTTAACCGCTTTGGCGCGCAGTTTGCCACCTGCATCCGGCGCGATAGGCCGGGGCCGTCGGACAAGTGGCATCTGGACGAGGTC
GTCATCCCGATACGCGGCAGGAAACACTGGCTCTGGCGGGCGGTTGACGCCAATGGCCACACGCTCGACATCCTCGTGCAAACCCGCCGGAACGCCAGAG
CCGCAAGGCGCTTTCTGGCAAGGCTCATCGCGCAATTCGGCCAGCCGCGTGTGATGATCACCGACAAGCTGCGCAGCTACTTCAAGCCAATCCGGAACCT
GGCTCCCGACGCCGACCACAGGGCACACAAGGGGCTGAACAACCTGGTCGAGGGCTCACACAGACCAACGCGACGGCGAGAGAAGATCATGGGACGCTTC
AAGTCCCAACGACAGGCGCAGAGATTCCTCGCCGCCCATGACCAGATCAACACCCTCTTCCGTCCCCGCCGCTATCGTCTCACCGCATCTTCATACCGCC
ACGCACGGGCTGACGCCTTCAGCCTGTGGAACGACTATGCGCTCGAGATGAACGCATAAGCGCTCACGCTTCGCCCCCCTTTGCGCCCACAATCACCCAA
CTTGGCAATGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
531 bp | 236 aa | 49 | 579 | + | No |
Chemistry : DDE
ORF sequence :
MKTPSSMPRLKGFRFPREIIAYAVWAYHRFALSGADVEDLLAERGVIVSRESIRLWVNRFGAQFATCIRRDRPGPSDKWHLDEVVIPIRGRKHWLWRAVD
ANGHTLDILVQTRRNARAARRFLARLIAQFGQPRVMITDKLRSYFKPIRNLAPDADHRAHKGLNNLVEGSHRPTRRREKIMGRFKSQRQAQRFLAAHDQI
NTLFRPRRYRLTASSYRHARADAFSLWNDYALEMNA
ANGHTLDILVQTRRNARAARRFLARLIAQFGQPRVMITDKLRSYFKPIRNLAPDADHRAHKGLNNLVEGSHRPTRRREKIMGRFKSQRQAQRFLAAHDQI
NTLFRPRRYRLTASSYRHARADAFSLWNDYALEMNA
Blast result :
Comments
ISPpa9 is 67% aa similar to ISRsp9.
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277