ISPko1
- Family IS5
- Group IS903
Isoform Synonym(s) ISPkr2
Accession number | Transposition | Origin | Host |
---|---|---|---|
GQ868751 | Y | Paracoccus kondratievae | Paracoccus koreensis JCM 21670 Paracoccus kondratievae NCIMB 13773 |
DNA section
IS Length : 1050 bp
Ends
IR Length : 18
IRL : GGCTCTGTTGCACAAATCCCGTGTGGGATTCATCTCATGAATCCAGCGTG
IRR : GGCTCTGTTGCACAAATCGGCTGATGGCCTGGGTTCCCCTTTCCCCGGAC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAAATCTATC | ACCGCAAGG | GATAAATATC | 9 |
DNA sequence
GGCTCTGTTGCACAAATCCCGTGTGGGATTCATCTCATGAATCCAGCGTGGTAGCTGGGATACATGAGCAGACCTACACCCCCGACCTACAGGACCAGGA
ACTGGCCAGCCTACAATGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTCGATCCCGAGATGAGCTGGGATGCCGCGCCGACAGGTAGGCGTGG
CCGCCAGCAGACCTACAGCGATGCCGCCATCCAGACATGCCTTTCGATGAAGGTGCTGTTCGGCATGGCGCTTCGGCAGACGACAGGCTTCGTCGAAAGC
CTACTGCGGCTGGTCGGCCTCGACTGGGCGGTGCCCGACTTCAGCACCCTGTCCCGCCGCCAGAAGACCCTGGCCGTGAACATCCCGTATCGCGGCTCCA
AGGGGCCGCTGCACCTGCTGATCGACAGCACGGGTATCAAAGTCGAGGGCGAAGGCGAGTGGCACGCCCGCAAGCATGGCGGCCCGAAACGGCGCGTCTG
GCGCAAGATCCATCTCGGGATCGACGAGGAAACACTGGAGGTTCGCGCAGTCGAGGTCACAGGTAGCCATATCGGCGATGCACCGGTCTTACCCGACCTG
CTCAACCAGATCCCAGCGTACGAGCAGATCAGCAGCGTCACTGCCGACGGTGCCTACGACACCCGCAAATGCCACGATGCAATCGCTGACCGCGGCGCCC
GCGCTGTCATTCCGCCTCGCAAGAATGCCAAGCCGTGGAAGACCGTCACCGCCGGCGCGGTCGCACGAAACGAAGCGCTGCGGGCATCGAAATACCTCGG
TCGTGCTCTCTGGCGACGATGGAGCGGATACCACCGCCGAAGCCGCGTCGAAACGAAGATGCACTGTGTGAAACTGCTGGGGCAGCGCCTCATGGCGCGG
GACTTCGACCGACAGGTCGCGGAGCTTCAGGTCCGTATCGCCGTTCTGAACGGCTACACCGCGCTCGGCATCCCTGTCACAGAGCCCGTGGGATAAGTCT
GTCCGGGGAAAGGGGAACCCAGGCCATCAGCCGATTTGTGCAACAGAGCC
ACTGGCCAGCCTACAATGAAGCGCTCAAGCGCCGCGGCTCGCTGACGATCTGGTTCGATCCCGAGATGAGCTGGGATGCCGCGCCGACAGGTAGGCGTGG
CCGCCAGCAGACCTACAGCGATGCCGCCATCCAGACATGCCTTTCGATGAAGGTGCTGTTCGGCATGGCGCTTCGGCAGACGACAGGCTTCGTCGAAAGC
CTACTGCGGCTGGTCGGCCTCGACTGGGCGGTGCCCGACTTCAGCACCCTGTCCCGCCGCCAGAAGACCCTGGCCGTGAACATCCCGTATCGCGGCTCCA
AGGGGCCGCTGCACCTGCTGATCGACAGCACGGGTATCAAAGTCGAGGGCGAAGGCGAGTGGCACGCCCGCAAGCATGGCGGCCCGAAACGGCGCGTCTG
GCGCAAGATCCATCTCGGGATCGACGAGGAAACACTGGAGGTTCGCGCAGTCGAGGTCACAGGTAGCCATATCGGCGATGCACCGGTCTTACCCGACCTG
CTCAACCAGATCCCAGCGTACGAGCAGATCAGCAGCGTCACTGCCGACGGTGCCTACGACACCCGCAAATGCCACGATGCAATCGCTGACCGCGGCGCCC
GCGCTGTCATTCCGCCTCGCAAGAATGCCAAGCCGTGGAAGACCGTCACCGCCGGCGCGGTCGCACGAAACGAAGCGCTGCGGGCATCGAAATACCTCGG
TCGTGCTCTCTGGCGACGATGGAGCGGATACCACCGCCGAAGCCGCGTCGAAACGAAGATGCACTGTGTGAAACTGCTGGGGCAGCGCCTCATGGCGCGG
GACTTCGACCGACAGGTCGCGGAGCTTCAGGTCCGTATCGCCGTTCTGAACGGCTACACCGCGCTCGGCATCCCTGTCACAGAGCCCGTGGGATAAGTCT
GTCCGGGGAAAGGGGAACCCAGGCCATCAGCCGATTTGTGCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
933 bp | 310 aa | 64 | 996 | + | No |
Chemistry : DDE
ORF sequence :
MSRPTPPTYRTRNWPAYNEALKRRGSLTIWFDPEMSWDAAPTGRRGRQQTYSDAAIQTCLSMKVLFGMALRQTTGFVESLLRLVGLDWAVPDFSTLSRRQ
KTLAVNIPYRGSKGPLHLLIDSTGIKVEGEGEWHARKHGGPKRRVWRKIHLGIDEETLEVRAVEVTGSHIGDAPVLPDLLNQIPAYEQISSVTADGAYDT
RKCHDAIADRGARAVIPPRKNAKPWKTVTAGAVARNEALRASKYLGRALWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAELQVRIAVLNGYTA
LGIPVTEPVG
KTLAVNIPYRGSKGPLHLLIDSTGIKVEGEGEWHARKHGGPKRRVWRKIHLGIDEETLEVRAVEVTGSHIGDAPVLPDLLNQIPAYEQISSVTADGAYDT
RKCHDAIADRGARAVIPPRKNAKPWKTVTAGAVARNEALRASKYLGRALWRRWSGYHRRSRVETKMHCVKLLGQRLMARDFDRQVAELQVRIAVLNGYTA
LGIPVTEPVG
Blast result :
Comments
References
1] Dziewit, L., Baj, J., Szuplewska, M., Maj A., Tabin, M., Czyzkowska, A., Skrzypczyk, G., Adamczuk, M., Sitarek, T., Stawinski, P., Tudek, A., Wanasz, K., Wardal, E., Piechucka, E., Bartosik, D. (2012) PLoS ONE 7: e32277