ISCco1
- Family IS200/IS605
- Group IS605
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
ND | Campylobacter coli | Campylobacter coli RM2228 |
DNA section
IS Length : 1871 bp
Ends
Left end : CAATTTCCAAGCAAGAAAACTCTCGCTTCTATAAGCGAGAGATGAATTGCTTTTTTTCTAAAAATTATAACATATTTCAGTAAAATTTGCTATAATTATC II struct. : Yes
Right end : AACTAGCCTATTAGACTATAAACAAGAAGCCTTGCGTGTTAGCTGACATTGGTTGGCTTTAGTAAGGAAGCACCTACTTCTATAAGTAGGTGTGGTTCAC II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
TTGATGGCATTTAATT | TTAT | CAAGAGATTTGATTTACTT | TCAC |
AGAATATTTTTTTATT | TTGT | TTAATTCTTTAGATAAAAA | TCAC |
ATCTTCTTTTTTATTT | TTAT | TTTTAAATCTTTTATATTA | TCAC |
AATGGGGAACTAAAAT | TTAT | TTTAACTTGGTTTTGAAGG | TCAC |
TTTATATGCTAGTTTT | TTAT | GTATTAAAAATTTGTTAAT | TCAC |
DNA sequence
CAATTTCCAAGCAAGAAAACTCTCGCTTCTATAAGCGAGAGATGAATTGCTTTTTTTCTAAAAATTATAACATATTTCAGTAAAATTTGCTATAATTATC
TTATGAAAATAGAATATGAGAGAAATTTACATTCAGTATTTTTGTTACAATATCACTTAATATTAGTAGTGAAGTATCGTAAAAAGGTAATTACTGATGA
GATATGTTGTAGATTAAAAGAGATTTTTGAGTATATTGCTAAATCTAGTAATTATCAATTAGAAATAATCGAGTTTAACCACGATATTGACCATTTGCAT
ATCTTATTTAAGGCAAAGCCTAAAAGTGAACTACTAAAATTCATAAATGCTTATAAGTCTGCTAGTAGTAGACTTATAAAAAAAGAATTTAGTGAAATTA
AAAAATATCTTTGGAAAGAATATTTTTGGAGTGGTAGTTATTTTTTAGCTACCACAGGTGGAGTTAGCTTAGATGTTCTAAAAGCATATGTGCAAAATCA
AGGTATAGAAGATAATAGAGTAAAAAAGCAATATAACTCTAAACACAAACGACTGAAAGAGCAAGAACTATGCAAATAACCAAAGGCTTTAAGTATAGGC
TATATCCAAACAAAGAGCAAAGCTTAAAGCTTTCTCATCAATGTTTCATCTATAATCAAGCCTATAATATTTGCCTAAACTTACAACAAGAACAATGGCT
AAAAAATAAAGAATTAGATAAAAAAGAAAGAACTTATTTAAGTGCTACTCAAATCGATAATCAAGTAAAACTAGCCTTAAAAGCTAGAAACTTAGAGTTT
AAAAGTGTAGTAGCACAACAAGCTAGAATAAATGCTAATAGAGCATTAGAACAAGCAATAAAAGATAAAAATAAAGGTTTTCCAAAGTTTAAAAACTCTA
AATTGGCAAAGCAAAGTTTCAATTGGAATAATCAAGGCTATCAAATTCTAGAATTTAACGATAAGTTTAAAATATTTAGACTTATGTCTATGCCTATAAA
AATGCGTTATCATAGAGCTTTGCCAAATAATTATAAACTAAATCAAATAACTATTTCTAAAACTCATAATAAATACTTTGTCTCATTTAGTATAACTTAT
GATGAACCAAGTGTTGTTTTAATGTCTAGCAATAAAATAGACATTAACAGAGCAGTTGGCATTGATATGAATATCAATGAAATTGCTTTAAGCAATGGTG
CTTTGTTACTGACTTGTTCTAAGAGTATAAATAAAGCTAAATACTCTACTACTTTCAAACGCTTAATGCGAAAACAAAGTAAAAGAGTATTGAAAGCTAA
AAAGGATAAGATTAAGTTAGGTTCTAATTTTAGAAAAACTCAAATTAGACTTAATAAAATCTATGAAAGAGCTAGTAATATAAAAAAAGATTTAGCTCAT
AAGATAAGTAATCAAATAGTAAAAAACTTTGATTTGATAGTAGTAGAAAATCTAAAAGTGAAAAATATGACTAAACGAGCAAAGCTTAAAAATGTAAAAG
CTAAAAGTGGCTTAAATAAGTCTATATTAGATACTTCTTTCTATCAATTTTTAAGCTTTGTGGAATATAAAGCTATGCATAATGGCAAAGTATTTACTAA
GATAGAACCACAATATACAAGCAAAGCTTGTTGCAAATGTGGAACTATAAAAGAGAATTTAACTCTAAAAGATAGAGTTTTTACTTGCGATAATTGTGGA
TATGTAGAACATAGAGATATAAATGCAAGTAAAAATATCTTGGATAGAGGCTTGAAGTCGTTTGGGCTAGGAACTAGCCTATTAGACTATAAACAAGAAG
CCTTGCGTGTTAGCTGACATTGGTTGGCTTTAGTAAGGAAGCACCTACTTCTATAAGTAGGTGTGGTTCAC
TTATGAAAATAGAATATGAGAGAAATTTACATTCAGTATTTTTGTTACAATATCACTTAATATTAGTAGTGAAGTATCGTAAAAAGGTAATTACTGATGA
GATATGTTGTAGATTAAAAGAGATTTTTGAGTATATTGCTAAATCTAGTAATTATCAATTAGAAATAATCGAGTTTAACCACGATATTGACCATTTGCAT
ATCTTATTTAAGGCAAAGCCTAAAAGTGAACTACTAAAATTCATAAATGCTTATAAGTCTGCTAGTAGTAGACTTATAAAAAAAGAATTTAGTGAAATTA
AAAAATATCTTTGGAAAGAATATTTTTGGAGTGGTAGTTATTTTTTAGCTACCACAGGTGGAGTTAGCTTAGATGTTCTAAAAGCATATGTGCAAAATCA
AGGTATAGAAGATAATAGAGTAAAAAAGCAATATAACTCTAAACACAAACGACTGAAAGAGCAAGAACTATGCAAATAACCAAAGGCTTTAAGTATAGGC
TATATCCAAACAAAGAGCAAAGCTTAAAGCTTTCTCATCAATGTTTCATCTATAATCAAGCCTATAATATTTGCCTAAACTTACAACAAGAACAATGGCT
AAAAAATAAAGAATTAGATAAAAAAGAAAGAACTTATTTAAGTGCTACTCAAATCGATAATCAAGTAAAACTAGCCTTAAAAGCTAGAAACTTAGAGTTT
AAAAGTGTAGTAGCACAACAAGCTAGAATAAATGCTAATAGAGCATTAGAACAAGCAATAAAAGATAAAAATAAAGGTTTTCCAAAGTTTAAAAACTCTA
AATTGGCAAAGCAAAGTTTCAATTGGAATAATCAAGGCTATCAAATTCTAGAATTTAACGATAAGTTTAAAATATTTAGACTTATGTCTATGCCTATAAA
AATGCGTTATCATAGAGCTTTGCCAAATAATTATAAACTAAATCAAATAACTATTTCTAAAACTCATAATAAATACTTTGTCTCATTTAGTATAACTTAT
GATGAACCAAGTGTTGTTTTAATGTCTAGCAATAAAATAGACATTAACAGAGCAGTTGGCATTGATATGAATATCAATGAAATTGCTTTAAGCAATGGTG
CTTTGTTACTGACTTGTTCTAAGAGTATAAATAAAGCTAAATACTCTACTACTTTCAAACGCTTAATGCGAAAACAAAGTAAAAGAGTATTGAAAGCTAA
AAAGGATAAGATTAAGTTAGGTTCTAATTTTAGAAAAACTCAAATTAGACTTAATAAAATCTATGAAAGAGCTAGTAATATAAAAAAAGATTTAGCTCAT
AAGATAAGTAATCAAATAGTAAAAAACTTTGATTTGATAGTAGTAGAAAATCTAAAAGTGAAAAATATGACTAAACGAGCAAAGCTTAAAAATGTAAAAG
CTAAAAGTGGCTTAAATAAGTCTATATTAGATACTTCTTTCTATCAATTTTTAAGCTTTGTGGAATATAAAGCTATGCATAATGGCAAAGTATTTACTAA
GATAGAACCACAATATACAAGCAAAGCTTGTTGCAAATGTGGAACTATAAAAGAGAATTTAACTCTAAAAGATAGAGTTTTTACTTGCGATAATTGTGGA
TATGTAGAACATAGAGATATAAATGCAAGTAAAAATATCTTGGATAGAGGCTTGAAGTCGTTTGGGCTAGGAACTAGCCTATTAGACTATAAACAAGAAG
CCTTGCGTGTTAGCTGACATTGGTTGGCTTTAGTAAGGAAGCACCTACTTCTATAAGTAGGTGTGGTTCAC
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
477 bp | 158 aa | 103 | 579 | + | No |
Chemistry : Y1
ORF sequence :
MKIEYERNLHSVFLLQYHLILVVKYRKKVITDEICCRLKEIFEYIAKSSNYQLEIIEFNHDIDHLHILFKAKPKSELLKFINAYKSASSRLIKKEFSEIK
KYLWKEYFWSGSYFLATTGGVSLDVLKAYVQNQGIEDNRVKKQYNSKHKRLKEQELCK
KYLWKEYFWSGSYFLATTGGVSLDVLKAYVQNQGIEDNRVKKQYNSKHKRLKEQELCK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1248 bp | 415 aa | 570 | 1817 | + | No |
AG : TnpB
ORF sequence :
MQITKGFKYRLYPNKEQSLKLSHQCFIYNQAYNICLNLQQEQWLKNKELDKKERTYLSATQIDNQVKLALKARNLEFKSVVAQQARINANRALEQAIKDK
NKGFPKFKNSKLAKQSFNWNNQGYQILEFNDKFKIFRLMSMPIKMRYHRALPNNYKLNQITISKTHNKYFVSFSITYDEPSVVLMSSNKIDINRAVGIDM
NINEIALSNGALLLTCSKSINKAKYSTTFKRLMRKQSKRVLKAKKDKIKLGSNFRKTQIRLNKIYERASNIKKDLAHKISNQIVKNFDLIVVENLKVKNM
TKRAKLKNVKAKSGLNKSILDTSFYQFLSFVEYKAMHNGKVFTKIEPQYTSKACCKCGTIKENLTLKDRVFTCDNCGYVEHRDINASKNILDRGLKSFGL
GTSLLDYKQEALRVS
NKGFPKFKNSKLAKQSFNWNNQGYQILEFNDKFKIFRLMSMPIKMRYHRALPNNYKLNQITISKTHNKYFVSFSITYDEPSVVLMSSNKIDINRAVGIDM
NINEIALSNGALLLTCSKSINKAKYSTTFKRLMRKQSKRVLKAKKDKIKLGSNFRKTQIRLNKIYERASNIKKDLAHKISNQIVKNFDLIVVENLKVKNM
TKRAKLKNVKAKSGLNKSILDTSFYQFLSFVEYKAMHNGKVFTKIEPQYTSKACCKCGTIKENLTLKDRVFTCDNCGYVEHRDINASKNILDRGLKSFGL
GTSLLDYKQEALRVS
Blast result :
Comments
ISCco1 is 78% (ORFA, the transposase) aa similar to ISEfa4 and 66% (ORFB) to IS606.
References
1] ISfinder annotation (2010)
2] Fouts,D.E., Mongodin,E.F., Mandrell,R.E., Miller,W.G., Rasko,D.A., Jacques,R.J., Brinkac,L.M., DeBoy,R.T., Parker,C.T., Daugherty,S.C., Dodson,R.J., Durkin,A.S., Madupu,R.R., Sullivan,S.A., Shetty,J.U., Ayodeji,M.A., Shvartsbeyn,A.A., Schatz,M.C., Badger,J.H., Fraser,C.M. and Nelson,K.E. (2004) Direct submission GenBank.
2] Fouts,D.E., Mongodin,E.F., Mandrell,R.E., Miller,W.G., Rasko,D.A., Jacques,R.J., Brinkac,L.M., DeBoy,R.T., Parker,C.T., Daugherty,S.C., Dodson,R.J., Durkin,A.S., Madupu,R.R., Sullivan,S.A., Shetty,J.U., Ayodeji,M.A., Shvartsbeyn,A.A., Schatz,M.C., Badger,J.H., Fraser,C.M. and Nelson,K.E. (2004) Direct submission GenBank.