ISBmu23

  • Family IS5
  • Group IS5
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_010805 ND Burkholderia multivorans
Burkholderia multivorans ATCC 17616 chromosome 2
DNA section
IS Length : 1210 bp

Ends


IR Length : 15/16

IRL : GGAAACACTGATCAATTCGGCTTGGCGGTCATCGCTGACGAGGCCAAGGG
IRR : GGAAACGCTGATCAATGAGCCTGTCGTCCGCATAACGGACGAGGCAGGTT

Insertion site


Left flankDirect repeatRight flankDR Length
GCCGCGGTTCCTAATGGGACGACG4

DNA sequence

GGAAACACTGATCAATTCGGCTTGGCGGTCATCGCTGACGAGGCCAAGGGCGTTGTAGAAAGAAGCTCACGGAACGGACCCACGACGATGCAGCGGCAGA
TCGGTTTTGCGGAAGCGGAAAGTGCGGGCAAGAAGCGGGTGACCAAGCGTCAACGCTTTCTGGCCGAGATGGAGAAGGTCGTCCCTTGGTCGCGGCTGCT
GTCGGTGATCGGGCCGTATTACCCGAAGGGCGAGCGTGGCCGGCCGCCGATTGGCCTGGAACGGATGCTGCGGATCTACTTGCTGCAGCAGTGGTACGGG
TTGTCGGACGAAGGGCTTGAAGATGCGCTCTACGACAGCATCGCGATGCGCGCCTTCGCGGGCATCGACCTGGCGCGCGAGAACGTGCCGGACGCCACCA
CGCTGTTGAAATTCCGGCGCCTGCTGGTCGAGCACGCACTGACGCGAAAGCTGTTCGACGAGATCGGCATCGAGTTGTGCGAGCGCGGGCTGATGATGAA
GGAAGGCACGCTGGTGGATGCGACGATCTTCGAGGCTGCGCCGTCCACGAAGAACGCCGGGAAGAGCCGTGACCCGGAGATGCATCAGACGAAGAAGGGC
AACGACTGGTATTTCGGCATGAAGGCCCATGTCGGCGTCGACGCCGACTCGGGTCTGGTGCATAGCGTGGTCACCACGGCGGCCAACGAGCCGGACGTAT
CGCAGGCCCACGCCCTGCTGCACGGTCATGAGCAGGAAGCGTTTGGCGATGCGGGCTACACCGGCGTGGACAAGCGCGAGGAGATGAAGGGCAAGACGGT
GAAGTGGCACGTGGCGCTCAAGCGCGGAAAGATCAGGGCGATGCAGGAAGGTCCGCTGAAGGACCTCGTGATCGCGGTCGAGCGAACCAAGGCGCAGATC
CGCGCCCGGGTCGAGCATCCGTTTCATGTCGTGAAGAACCTGTTTCGTCATCGCAAGGTGCGCTACAAGGGTCTAGCCAGGAACACGGCACAGCTGTTCA
GTCTGTTCGCGCTGGCGAACCTGGTGATCGCGAAAAATCAGCTGTTGTCGACTCATGGGAGCAATCCGTCATGTGTGTGAAAAACGCGGGAAGTGAGGCC
CGAATACGAGCGAAACTCACCTCGCATGTCGTCAAATTCCTACGTCAATCTGAAAATTGCAACCTGCCTCGTCCGTTATGCGGACGACAGGCTCATTGAT
CAGCGTTTCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
993 bp330 aa881080+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MQRQIGFAEAESAGKKRVTKRQRFLAEMEKVVPWSRLLSVIGPYYPKGERGRPPIGLERMLRIYLLQQWYGLSDEGLEDALYDSIAMRAFAGIDLARENV
PDATTLLKFRRLLVEHALTRKLFDEIGIELCERGLMMKEGTLVDATIFEAAPSTKNAGKSRDPEMHQTKKGNDWYFGMKAHVGVDADSGLVHSVVTTAAN
EPDVSQAHALLHGHEQEAFGDAGYTGVDKREEMKGKTVKWHVALKRGKIRAMQEGPLKDLVIAVERTKAQIRARVEHPFHVVKNLFRHRKVRYKGLARNT
AQLFSLFALANLVIAKNQLLSTHGSNPSCV

 

Blast result :
Comments
ISBmu23 is 91% aa similar to ISBmu2.
References
1] Ohtsubo,Y., Yuji,N. and Tsuda,M. (2007) Direct submission GenBank.