ISBmu20
- Family IS5
- Group IS5
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010801 | ND | Burkholderia multivorans | Burkholderia multivorans ATCC 17616 chromosome 3 |
DNA section
IS Length : 1158 bp
Ends
IR Length : 16
IRL : GGAAGGTCTGCATAAACCGCCCGGACATGTGCTTGGCGCCGGCCTGATTG
IRR : GGAAGGTCTGCACAAATGAGCGCTGACCATGGTTGGGTGCACTGACATGA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
ATCAGTACTC | CTAA | GGGTTGATGT | 4 |
DNA sequence
GGAAGGTCTGCATAAACCGCCCGGACATGTGCTTGGCGCCGGCCTGATTGCCTGAGACCATTGATCCCATGAAGCAGAGCAGCCTTGGATTGGGAACGTC
GACGAAGCGCACGCGCCGTCGGGAGTTCCTCGACGAGATGGACCGGGTGGTGCCGTGGTCCGACCTGGTGGCGCAGATCGCGCCGTTCATGCCCGAGGGC
AAACGCGGCCGTCCGCCGTTCCCAGTGGAGTCGCTGCTGCGCATCCACTTCATGCAGCAGTGGTTCACGCTGAGCGACCCGGCCATGGAAGACGCGCTGC
ATGACATGCCGCTGTTCCGTGACTTCGCCGGCCTGGGCGGCTGGGATGACCGGCTGCCCGACGAGAGCACCATCTTGCGCTTCCCTCATGTGCTGGAGAA
GCACAAGCTGGCCGAGCGGATCCTGGCGACCGTCAACCTGCTGCTGGGTGCCAAGGGTCTGATGCTGCGCAGCGGCACGGTGGTCGATGCCACGCTGATC
TCGGCGCCGAGCTCGACCAAGAACGCCAGCGGTGAGCGCGACCCGGAGATGCACCAGAGCAAGAAGGGCCAGCAGTGGTTCTTCGGCATGAAGGCGCACA
TCGGCGTGGACGCCGACTCGGGTCTGGTTCACACCGTGCGTGGCACATCGGGCAACGTCAACGATGTGGTCGAAGCCAACAGCTTGCTGCACGGGCAAGA
GACGGATGCCTTTGCCGATGCCGGCTATCAAGGCGCGCACAAGCGGCCCGACGCCAAAGAGGATGTGCAGTGGCATGTGGCCATGCGCCCGGGCTTGCGC
AAGCTGCTGGACAAGGCAGACCCGGCGGACGCGCTGACCGAGCAGGTCGAGCGCATCAAGGCCAGCATCCGCGCCAAGGTGGAGCACCCGTTCCGTGTCA
TCAAGCGCCAGTTCGGCCATGTGAAGGTGCGCTACCGCGGCTTGGCCAAGAACACGGCGCAGTTGCACACGCTGTTCGCGCTGGCCAATCTGTGGATGGT
GCGCAAGCGTTTGACGGGGAGCCTGGCATGAGTGCGCCTGCTGCACGGGAAATAAGCGCGAAACGCGCCCAAAACACCTGCCAGCAGAGCGTTCAACCGC
CAATCTGGTCATGTCAGTGCACCCAACCATGGTCAGCGCTCATTTGTGCAGACCTTCC
GACGAAGCGCACGCGCCGTCGGGAGTTCCTCGACGAGATGGACCGGGTGGTGCCGTGGTCCGACCTGGTGGCGCAGATCGCGCCGTTCATGCCCGAGGGC
AAACGCGGCCGTCCGCCGTTCCCAGTGGAGTCGCTGCTGCGCATCCACTTCATGCAGCAGTGGTTCACGCTGAGCGACCCGGCCATGGAAGACGCGCTGC
ATGACATGCCGCTGTTCCGTGACTTCGCCGGCCTGGGCGGCTGGGATGACCGGCTGCCCGACGAGAGCACCATCTTGCGCTTCCCTCATGTGCTGGAGAA
GCACAAGCTGGCCGAGCGGATCCTGGCGACCGTCAACCTGCTGCTGGGTGCCAAGGGTCTGATGCTGCGCAGCGGCACGGTGGTCGATGCCACGCTGATC
TCGGCGCCGAGCTCGACCAAGAACGCCAGCGGTGAGCGCGACCCGGAGATGCACCAGAGCAAGAAGGGCCAGCAGTGGTTCTTCGGCATGAAGGCGCACA
TCGGCGTGGACGCCGACTCGGGTCTGGTTCACACCGTGCGTGGCACATCGGGCAACGTCAACGATGTGGTCGAAGCCAACAGCTTGCTGCACGGGCAAGA
GACGGATGCCTTTGCCGATGCCGGCTATCAAGGCGCGCACAAGCGGCCCGACGCCAAAGAGGATGTGCAGTGGCATGTGGCCATGCGCCCGGGCTTGCGC
AAGCTGCTGGACAAGGCAGACCCGGCGGACGCGCTGACCGAGCAGGTCGAGCGCATCAAGGCCAGCATCCGCGCCAAGGTGGAGCACCCGTTCCGTGTCA
TCAAGCGCCAGTTCGGCCATGTGAAGGTGCGCTACCGCGGCTTGGCCAAGAACACGGCGCAGTTGCACACGCTGTTCGCGCTGGCCAATCTGTGGATGGT
GCGCAAGCGTTTGACGGGGAGCCTGGCATGAGTGCGCCTGCTGCACGGGAAATAAGCGCGAAACGCGCCCAAAACACCTGCCAGCAGAGCGTTCAACCGC
CAATCTGGTCATGTCAGTGCACCCAACCATGGTCAGCGCTCATTTGTGCAGACCTTCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
963 bp | 320 aa | 69 | 1031 | + | No |
Chemistry : DDE
ORF sequence :
MKQSSLGLGTSTKRTRRREFLDEMDRVVPWSDLVAQIAPFMPEGKRGRPPFPVESLLRIHFMQQWFTLSDPAMEDALHDMPLFRDFAGLGGWDDRLPDES
TILRFPHVLEKHKLAERILATVNLLLGAKGLMLRSGTVVDATLISAPSSTKNASGERDPEMHQSKKGQQWFFGMKAHIGVDADSGLVHTVRGTSGNVNDV
VEANSLLHGQETDAFADAGYQGAHKRPDAKEDVQWHVAMRPGLRKLLDKADPADALTEQVERIKASIRAKVEHPFRVIKRQFGHVKVRYRGLAKNTAQLH
TLFALANLWMVRKRLTGSLA
TILRFPHVLEKHKLAERILATVNLLLGAKGLMLRSGTVVDATLISAPSSTKNASGERDPEMHQSKKGQQWFFGMKAHIGVDADSGLVHTVRGTSGNVNDV
VEANSLLHGQETDAFADAGYQGAHKRPDAKEDVQWHVAMRPGLRKLLDKADPADALTEQVERIKASIRAKVEHPFRVIKRQFGHVKVRYRGLAKNTAQLH
TLFALANLWMVRKRLTGSLA
Blast result :
Comments
ISBmu20 is 87% aa similar to ISAau3.
References
1]Ohtsubo,Y., Yuji,N. and Tsuda,M.(2007) Direct submission GenBank.