ISNemu1A

  • Family IS5
  • Group ISL2
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_ACDX02000021 ND Neisseria mucosa
Neisseria mucosa ATCC 25996
DNA section
IS Length : 855 bp

Ends


IR Length : 18/19

IRL : AGACCTCTTGCGAAAGTATCCTGAAGATTTACAATTCCCAAATGAAATAC
IRR : AGACCTCTTGCGAAAATATTCATCCCATTGCATTAATCAGCCCCGCAATC

Insertion site


Left flankDirect repeatRight flankDR Length
TAATCCATATAATGAAGCCAGAG3
ATAAGATATTAATAAACAAG0

DNA sequence

AGACCTCTTGCGAAAGTATCCTGAAGATTTACAATTCCCAAATGAAATACGAAAACCTCATCCAAAGAAGCGACAGGGAATTCAAACGGCTCACAGGTGT
AACGCCCGTCCTTTTTCACGAAATGCTGCAAATCACCACAGAAGCAGAAAGCCGGAAGGTCAAGTCAGGCAGGCCGCATACGCTCAGCTTGGCAGACCAA
CTGCTGCTTACCCTAAGCTATCTGCGCCATTACCATACCCAACTCGAATTGGCCGCCATCTACGGCCTTTCCGAAAGTAATGTCTGCCGCACCATCCGTA
AAACCGAGGACGCCCTCATCCGTTGCAAACGCTTCTCCCTGCCAAAGCACAAGAATCCGGGCGACCATACGGTCCTCATTGACGTTACCGAAAGCCCGAT
TGAACGTCCCAAAAAACAGCGGCAGTATTACAGCGGCAAGAAAAAGCGGCACACGGTTAAAATCCAGGTCATATACGGCAGAGAAACTGAAAAAATCATC
AGCATCCGGACGGGGATGGGTGCTCAGCATGATATGCGTTTAGCTAGGAGGCACCTTACAGAGCTTTATCCCTACAAAATAGTCATTGCGGATAAGGGTT
ATCAAGGATTGGCTAAAACCGGATTACAGACCCCGAAAAAGAAATCCAAACATCATCTGCTGAACAAACAGGATAAAGAGGCGAATAGGCGGTTAGGCAA
ACTCAGAACCGTCATCGAGCACATCAATAGGAAGCTGAAAATATTCAAAATATTGTCTCTACCTTACCGCAACAGGCGGAAACGCTTCGGATTAAGGGCA
AATCTGATTGCGGGGCTGATTAATGCAATGGGATGAATATTTTCGCAAGAGGTCT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
795 bp264 aa42836+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKYENLIQRSDREFKRLTGVTPVLFHEMLQITTEAESRKVKSGRPHTLSLADQLLLTLSYLRHYHTQLELAAIYGLSESNVCRTIRKTEDALIRCKRFSL
PKHKNPGDHTVLIDVTESPIERPKKQRQYYSGKKKRHTVKIQVIYGRETEKIISIRTGMGAQHDMRLARRHLTELYPYKIVIADKGYQGLAKTGLQTPKK
KSKHHLLNKQDKEANRRLGKLRTVIEHINRKLKIFKILSLPYRNRRKRFGLRANLIAGLINAMG

 

Blast result :
Comments
ISNemu1 is 61% aa similar to ISCaa3.

ISNemu1B is an isoform of ISNemu1A. ISNemu1B carry a frameshift may be induced by a ponctual mutation.
References
1] ISfinder annotation (2010).

2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.