ISNemu1A
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_ACDX02000021 | ND | Neisseria mucosa | Neisseria mucosa ATCC 25996 |
DNA section
IS Length : 855 bp
Ends
IR Length : 18/19
IRL : AGACCTCTTGCGAAAGTATCCTGAAGATTTACAATTCCCAAATGAAATAC
IRR : AGACCTCTTGCGAAAATATTCATCCCATTGCATTAATCAGCCCCGCAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TAATCCATAT | AAT | GAAGCCAGAG | 3 |
ATAAGATATT | AATAAACAAG | 0 |
DNA sequence
AGACCTCTTGCGAAAGTATCCTGAAGATTTACAATTCCCAAATGAAATACGAAAACCTCATCCAAAGAAGCGACAGGGAATTCAAACGGCTCACAGGTGT
AACGCCCGTCCTTTTTCACGAAATGCTGCAAATCACCACAGAAGCAGAAAGCCGGAAGGTCAAGTCAGGCAGGCCGCATACGCTCAGCTTGGCAGACCAA
CTGCTGCTTACCCTAAGCTATCTGCGCCATTACCATACCCAACTCGAATTGGCCGCCATCTACGGCCTTTCCGAAAGTAATGTCTGCCGCACCATCCGTA
AAACCGAGGACGCCCTCATCCGTTGCAAACGCTTCTCCCTGCCAAAGCACAAGAATCCGGGCGACCATACGGTCCTCATTGACGTTACCGAAAGCCCGAT
TGAACGTCCCAAAAAACAGCGGCAGTATTACAGCGGCAAGAAAAAGCGGCACACGGTTAAAATCCAGGTCATATACGGCAGAGAAACTGAAAAAATCATC
AGCATCCGGACGGGGATGGGTGCTCAGCATGATATGCGTTTAGCTAGGAGGCACCTTACAGAGCTTTATCCCTACAAAATAGTCATTGCGGATAAGGGTT
ATCAAGGATTGGCTAAAACCGGATTACAGACCCCGAAAAAGAAATCCAAACATCATCTGCTGAACAAACAGGATAAAGAGGCGAATAGGCGGTTAGGCAA
ACTCAGAACCGTCATCGAGCACATCAATAGGAAGCTGAAAATATTCAAAATATTGTCTCTACCTTACCGCAACAGGCGGAAACGCTTCGGATTAAGGGCA
AATCTGATTGCGGGGCTGATTAATGCAATGGGATGAATATTTTCGCAAGAGGTCT
AACGCCCGTCCTTTTTCACGAAATGCTGCAAATCACCACAGAAGCAGAAAGCCGGAAGGTCAAGTCAGGCAGGCCGCATACGCTCAGCTTGGCAGACCAA
CTGCTGCTTACCCTAAGCTATCTGCGCCATTACCATACCCAACTCGAATTGGCCGCCATCTACGGCCTTTCCGAAAGTAATGTCTGCCGCACCATCCGTA
AAACCGAGGACGCCCTCATCCGTTGCAAACGCTTCTCCCTGCCAAAGCACAAGAATCCGGGCGACCATACGGTCCTCATTGACGTTACCGAAAGCCCGAT
TGAACGTCCCAAAAAACAGCGGCAGTATTACAGCGGCAAGAAAAAGCGGCACACGGTTAAAATCCAGGTCATATACGGCAGAGAAACTGAAAAAATCATC
AGCATCCGGACGGGGATGGGTGCTCAGCATGATATGCGTTTAGCTAGGAGGCACCTTACAGAGCTTTATCCCTACAAAATAGTCATTGCGGATAAGGGTT
ATCAAGGATTGGCTAAAACCGGATTACAGACCCCGAAAAAGAAATCCAAACATCATCTGCTGAACAAACAGGATAAAGAGGCGAATAGGCGGTTAGGCAA
ACTCAGAACCGTCATCGAGCACATCAATAGGAAGCTGAAAATATTCAAAATATTGTCTCTACCTTACCGCAACAGGCGGAAACGCTTCGGATTAAGGGCA
AATCTGATTGCGGGGCTGATTAATGCAATGGGATGAATATTTTCGCAAGAGGTCT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
795 bp | 264 aa | 42 | 836 | + | No |
Chemistry : DDE
ORF sequence :
MKYENLIQRSDREFKRLTGVTPVLFHEMLQITTEAESRKVKSGRPHTLSLADQLLLTLSYLRHYHTQLELAAIYGLSESNVCRTIRKTEDALIRCKRFSL
PKHKNPGDHTVLIDVTESPIERPKKQRQYYSGKKKRHTVKIQVIYGRETEKIISIRTGMGAQHDMRLARRHLTELYPYKIVIADKGYQGLAKTGLQTPKK
KSKHHLLNKQDKEANRRLGKLRTVIEHINRKLKIFKILSLPYRNRRKRFGLRANLIAGLINAMG
PKHKNPGDHTVLIDVTESPIERPKKQRQYYSGKKKRHTVKIQVIYGRETEKIISIRTGMGAQHDMRLARRHLTELYPYKIVIADKGYQGLAKTGLQTPKK
KSKHHLLNKQDKEANRRLGKLRTVIEHINRKLKIFKILSLPYRNRRKRFGLRANLIAGLINAMG
Blast result :
Comments
ISNemu1 is 61% aa similar to ISCaa3.
ISNemu1B is an isoform of ISNemu1A. ISNemu1B carry a frameshift may be induced by a ponctual mutation.
ISNemu1B is an isoform of ISNemu1A. ISNemu1B carry a frameshift may be induced by a ponctual mutation.
References
1] ISfinder annotation (2010).
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.
2] Weinstock,G., Sodergren,E., Clifton,S., Fulton,L., Fulton,B., Courtney,L., Fronick,C., Harrison,M., Strong,C., Farmer,C., Delahaunty,K., Markovic,C., Hall,O., Minx,P., Tomlinson,C., Mitreva,M., Nelson,J., Hou,S., Wollam,A., Pepin,K.H., Johnson,M., Bhonagiri,V., Nash,W.E., Warren,W., Chinwalla,A., Mardis,E.R. and Wilson,R.K. (2009) Direct submission GenBank.