ISHwa13

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1459 bp

Ends


IR Length : 14

IRL : CGGTACTTCACGAACGGTGTAATGGGCCGAATTAATCCGGTGAGTTAACC
IRR : CGGTACTTCACGAATGAGTCGAAACTTCCAGCGACAGTGACGGCCGAATA

Insertion site


Left flankDirect repeatRight flankDR Length
AATGACAACTACTTTTAGTATATTA5
GCGTTCTACTACTCTATCGTTGTCC5
GAGAATCATCAAGTTAACTCGTTGA5

DNA sequence

CGGTACTTCACGAACGGTGTAATGGGCCGAATTAATCCGGTGAGTTAACCGGAAAGAAATGTCTGGTTCTGGATGTGTTAGACCTTACAGACCCAGACGG
GTACCTTTCGGCATCAGAAGTCAAAGATACCGCGGAAGCGGTTATTTCTCCGCTCCCACTGCCGGGTGTCGAGGGGAGCCCCCTCGACCCCGGCGATATC
TGGCTCGTTGTTATCTTTGCCTGCGTGAACGAAACCTCAATCTGGGAAACCTGCAACGAACACGATGGAACACCCTGCGATGATACTGTTCTGGCGTGGC
TTCACACACTCAATCGTGGGTGGCTCGAAGTCGTTGCTAACCTCCAGCTTAGCCGCCTCGCTATGACGATTCTCGACGCAGAGCAGTCGAGAATCGTCTC
TATCGACTTCATCGACAACCCCTATCACGGCGACCACTACGACGAGGAAGGAGAGCTCTGCTCGATGGCTCCGAAAGATGGCACGACCACGTGCCATCGA
TACTGTACAGCGTACGTCGTTTCCAACGGAAAACCGGTGACGCTGGCGATGACGTACGTTCGTAACGACGAGACAGAGGCTGACGCGGTCGAGCGCGTGC
TCGCCCGCGTCGAGAACTACCCCTTTGAGATCGAGTTGCTGCTTGCTGACAGCGGTTTCTTCAATGAGCGTGTGATTCGTCGGTCACGAGAAATCGCTGC
CACAGTCGTTCACGTTCCAAAGAAAGGAGATCGCATGAAAGAGAAACTCGACGTGCACAAGTCGTACATGACGACCTACCGCATGTACAAAGACAGCGAG
CGGGAACTCCGTGTCCCGCTCGCGGTCTCTGTCTCCTACCAGAACGGTGATCGGAACAAACACGGCGAGGTTGTCCGTGGCTACGTGGCTTGCGGCGTTA
CCGATCATACCGCCAAACAGGTCGAACGGATCTATCGGAAACGATCAGGCATCGAGACGACCTACCGGCTGATTCGGCAGGCACGAGGGGTCACGACAAC
TCGTGACCCCGTCGTTCGGTTTGCCTTCATGCTCGTGGCTGCTATTCTGGAGAACCTCTGGTTGGTGCTTCGCTGGGCCGTCGTCGCCCGCCCGCAGCGG
GGCGGGCGCGACTTACCTGAAGAGTTCACGTTCTCTGTGTTTTGCGATTGGATTCGGAGGGAGTTGGAGGAGCAGTTGGAGCGACGGTGGAAGATCAAGA
TGAACGGGACAGGTATTCCACCGTCATACCAAGCGGCCGCGGGCTGACCACGGTCAGCCCTGGCCAGTCTGCCTCTGTATGAGCAACAGCTCTCTTCGAG
AAGTAGTCGAAAACGGGGGAAACGAGCTATTTGAGTGCGTACTCTGTTCGAAGTGGAAAGCAACTCACTGATTTTTGTAACTCATCCGAGAAACCATATA
GAATATGACTATTCGGCCGTCACTGTCGCTGGAAGTTTCGACTCATTCGTGAAGTACCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1173 bp390 aa751247+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLDLTDPDGYLSASEVKDTAEAVISPLPLPGVEGSPLDPGDIWLVVIFACVNETSIWETCNEHDGTPCDDTVLAWLHTLNRGWLEVVANLQLSRLAMTIL
DAEQSRIVSIDFIDNPYHGDHYDEEGELCSMAPKDGTTTCHRYCTAYVVSNGKPVTLAMTYVRNDETEADAVERVLARVENYPFEIELLLADSGFFNERV
IRRSREIAATVVHVPKKGDRMKEKLDVHKSYMTTYRMYKDSERELRVPLAVSVSYQNGDRNKHGEVVRGYVACGVTDHTAKQVERIYRKRSGIETTYRLI
RQARGVTTTRDPVVRFAFMLVAAILENLWLVLRWAVVARPQRGGRDLPEEFTFSVFCDWIRRELEEQLERRWKIKMNGTGIPPSYQAAAG

 

Blast result :
Comments
ISHwa13 is 62% aa similar to ISHwa12.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968