ISHwa13
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1459 bp
Ends
IR Length : 14
IRL : CGGTACTTCACGAACGGTGTAATGGGCCGAATTAATCCGGTGAGTTAACC
IRR : CGGTACTTCACGAATGAGTCGAAACTTCCAGCGACAGTGACGGCCGAATA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATGACAACT | ACTTT | TAGTATATTA | 5 |
GCGTTCTACT | ACTCT | ATCGTTGTCC | 5 |
GAGAATCATC | AAGTT | AACTCGTTGA | 5 |
DNA sequence
CGGTACTTCACGAACGGTGTAATGGGCCGAATTAATCCGGTGAGTTAACCGGAAAGAAATGTCTGGTTCTGGATGTGTTAGACCTTACAGACCCAGACGG
GTACCTTTCGGCATCAGAAGTCAAAGATACCGCGGAAGCGGTTATTTCTCCGCTCCCACTGCCGGGTGTCGAGGGGAGCCCCCTCGACCCCGGCGATATC
TGGCTCGTTGTTATCTTTGCCTGCGTGAACGAAACCTCAATCTGGGAAACCTGCAACGAACACGATGGAACACCCTGCGATGATACTGTTCTGGCGTGGC
TTCACACACTCAATCGTGGGTGGCTCGAAGTCGTTGCTAACCTCCAGCTTAGCCGCCTCGCTATGACGATTCTCGACGCAGAGCAGTCGAGAATCGTCTC
TATCGACTTCATCGACAACCCCTATCACGGCGACCACTACGACGAGGAAGGAGAGCTCTGCTCGATGGCTCCGAAAGATGGCACGACCACGTGCCATCGA
TACTGTACAGCGTACGTCGTTTCCAACGGAAAACCGGTGACGCTGGCGATGACGTACGTTCGTAACGACGAGACAGAGGCTGACGCGGTCGAGCGCGTGC
TCGCCCGCGTCGAGAACTACCCCTTTGAGATCGAGTTGCTGCTTGCTGACAGCGGTTTCTTCAATGAGCGTGTGATTCGTCGGTCACGAGAAATCGCTGC
CACAGTCGTTCACGTTCCAAAGAAAGGAGATCGCATGAAAGAGAAACTCGACGTGCACAAGTCGTACATGACGACCTACCGCATGTACAAAGACAGCGAG
CGGGAACTCCGTGTCCCGCTCGCGGTCTCTGTCTCCTACCAGAACGGTGATCGGAACAAACACGGCGAGGTTGTCCGTGGCTACGTGGCTTGCGGCGTTA
CCGATCATACCGCCAAACAGGTCGAACGGATCTATCGGAAACGATCAGGCATCGAGACGACCTACCGGCTGATTCGGCAGGCACGAGGGGTCACGACAAC
TCGTGACCCCGTCGTTCGGTTTGCCTTCATGCTCGTGGCTGCTATTCTGGAGAACCTCTGGTTGGTGCTTCGCTGGGCCGTCGTCGCCCGCCCGCAGCGG
GGCGGGCGCGACTTACCTGAAGAGTTCACGTTCTCTGTGTTTTGCGATTGGATTCGGAGGGAGTTGGAGGAGCAGTTGGAGCGACGGTGGAAGATCAAGA
TGAACGGGACAGGTATTCCACCGTCATACCAAGCGGCCGCGGGCTGACCACGGTCAGCCCTGGCCAGTCTGCCTCTGTATGAGCAACAGCTCTCTTCGAG
AAGTAGTCGAAAACGGGGGAAACGAGCTATTTGAGTGCGTACTCTGTTCGAAGTGGAAAGCAACTCACTGATTTTTGTAACTCATCCGAGAAACCATATA
GAATATGACTATTCGGCCGTCACTGTCGCTGGAAGTTTCGACTCATTCGTGAAGTACCG
GTACCTTTCGGCATCAGAAGTCAAAGATACCGCGGAAGCGGTTATTTCTCCGCTCCCACTGCCGGGTGTCGAGGGGAGCCCCCTCGACCCCGGCGATATC
TGGCTCGTTGTTATCTTTGCCTGCGTGAACGAAACCTCAATCTGGGAAACCTGCAACGAACACGATGGAACACCCTGCGATGATACTGTTCTGGCGTGGC
TTCACACACTCAATCGTGGGTGGCTCGAAGTCGTTGCTAACCTCCAGCTTAGCCGCCTCGCTATGACGATTCTCGACGCAGAGCAGTCGAGAATCGTCTC
TATCGACTTCATCGACAACCCCTATCACGGCGACCACTACGACGAGGAAGGAGAGCTCTGCTCGATGGCTCCGAAAGATGGCACGACCACGTGCCATCGA
TACTGTACAGCGTACGTCGTTTCCAACGGAAAACCGGTGACGCTGGCGATGACGTACGTTCGTAACGACGAGACAGAGGCTGACGCGGTCGAGCGCGTGC
TCGCCCGCGTCGAGAACTACCCCTTTGAGATCGAGTTGCTGCTTGCTGACAGCGGTTTCTTCAATGAGCGTGTGATTCGTCGGTCACGAGAAATCGCTGC
CACAGTCGTTCACGTTCCAAAGAAAGGAGATCGCATGAAAGAGAAACTCGACGTGCACAAGTCGTACATGACGACCTACCGCATGTACAAAGACAGCGAG
CGGGAACTCCGTGTCCCGCTCGCGGTCTCTGTCTCCTACCAGAACGGTGATCGGAACAAACACGGCGAGGTTGTCCGTGGCTACGTGGCTTGCGGCGTTA
CCGATCATACCGCCAAACAGGTCGAACGGATCTATCGGAAACGATCAGGCATCGAGACGACCTACCGGCTGATTCGGCAGGCACGAGGGGTCACGACAAC
TCGTGACCCCGTCGTTCGGTTTGCCTTCATGCTCGTGGCTGCTATTCTGGAGAACCTCTGGTTGGTGCTTCGCTGGGCCGTCGTCGCCCGCCCGCAGCGG
GGCGGGCGCGACTTACCTGAAGAGTTCACGTTCTCTGTGTTTTGCGATTGGATTCGGAGGGAGTTGGAGGAGCAGTTGGAGCGACGGTGGAAGATCAAGA
TGAACGGGACAGGTATTCCACCGTCATACCAAGCGGCCGCGGGCTGACCACGGTCAGCCCTGGCCAGTCTGCCTCTGTATGAGCAACAGCTCTCTTCGAG
AAGTAGTCGAAAACGGGGGAAACGAGCTATTTGAGTGCGTACTCTGTTCGAAGTGGAAAGCAACTCACTGATTTTTGTAACTCATCCGAGAAACCATATA
GAATATGACTATTCGGCCGTCACTGTCGCTGGAAGTTTCGACTCATTCGTGAAGTACCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1173 bp | 390 aa | 75 | 1247 | + | No |
Chemistry : DDE
ORF sequence :
MLDLTDPDGYLSASEVKDTAEAVISPLPLPGVEGSPLDPGDIWLVVIFACVNETSIWETCNEHDGTPCDDTVLAWLHTLNRGWLEVVANLQLSRLAMTIL
DAEQSRIVSIDFIDNPYHGDHYDEEGELCSMAPKDGTTTCHRYCTAYVVSNGKPVTLAMTYVRNDETEADAVERVLARVENYPFEIELLLADSGFFNERV
IRRSREIAATVVHVPKKGDRMKEKLDVHKSYMTTYRMYKDSERELRVPLAVSVSYQNGDRNKHGEVVRGYVACGVTDHTAKQVERIYRKRSGIETTYRLI
RQARGVTTTRDPVVRFAFMLVAAILENLWLVLRWAVVARPQRGGRDLPEEFTFSVFCDWIRRELEEQLERRWKIKMNGTGIPPSYQAAAG
DAEQSRIVSIDFIDNPYHGDHYDEEGELCSMAPKDGTTTCHRYCTAYVVSNGKPVTLAMTYVRNDETEADAVERVLARVENYPFEIELLLADSGFFNERV
IRRSREIAATVVHVPKKGDRMKEKLDVHKSYMTTYRMYKDSERELRVPLAVSVSYQNGDRNKHGEVVRGYVACGVTDHTAKQVERIYRKRSGIETTYRLI
RQARGVTTTRDPVVRFAFMLVAAILENLWLVLRWAVVARPQRGGRDLPEEFTFSVFCDWIRRELEEQLERRWKIKMNGTGIPPSYQAAAG
Blast result :
Comments
ISHwa13 is 62% aa similar to ISHwa12.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968