ISHwa12
- Family ISH3
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1509 bp
Ends
IR Length : 17
IRL : CGCTAGTTGTCCACTCTGTCTCAGTGATGCCGTCGCTGACATATAGTGCC
IRR : CGCTAGTTGTCCACTCTACCGATAACCGCAGCCGCGAAAGTAAAACTTCA
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CGATTGTCGT | ATAAT | GGGTGAAGAA | 5 |
GCTAATGTCC | AATGT | AGCCGAAAGT | 5 |
CGAGATATCG | AATAT | ATGGCTATTA | 5 |
GTGACAATCC | ATATT | AGACCGCAAC | 5 |
TGTGATGCGT | ATAAT | GAGCTCTATG | 5 |
ATTCAACCGC | ACTAT | CCGTTTGTTC | 5 |
DNA sequence
CGCTAGTTGTCCACTCTGTCTCAGTGATGCCGTCGCTGACATATAGTGCCAGATGAAGCGGGTGAATCAGGAAGCTGATTCATCCGCTGCCCGGATGTGT
GTGACGTGAACCTACCAAAGCTCAAACGAATCCTCACCGATCCGGACGAGTTCATTTCGAACAGCCAGTTGAAATCTCTTAGCATGGAGTTGCTTGAGTT
GATACCCATGGAAGGAATCGAGGGCTCTGGCCTCGATTCCGACCAGATCATGGAAGTCGTTTTACGAGCTGCTGTTGACCAGACATCGGTCAACGGTGTC
ACAACCAGCACTGAGGACACACCAAACCGGGAGACAGTGATGGATTGGCTCCACACGCTGGAAAAAGAGACAATGCTTGATGCTGTCAACGACATTCTCG
CGCTGGTAGCTATGACGGTTCTCGACCGCGACGGGTCGAGAACCATCTGCATCGACTTCATGAACAACCCATTCCACGGCTGTCCAGACGATGAAGACGA
ATTCCGGCGGATGAGTGCCCGCGACGGCACTACAAAGTGTCACCGCTACTGTACAGCGTTTGTTCTTGCACAGGGGAAACCGCTGACGCTGGCGGTTGAC
CCGGTTGATGGCAAAGATAGCAAGGCCGACGCGGTCGAGCGTGTGCTCGCCCGCGTCGAGACTTACCCGTTCGAGATCGATCAGATTCTCATGGACAGAG
ACGCCTTCTGTGGCGAGTTAATCGGCGTTCTCCGTGAGGCAGCACCGCCGGTCTTTCCGGTGAGAACCGGGAAAGAAACCCTCGAAGAGAAGCTCACAAC
GGGTTCCTCGTACATGACTGAGGAGATAATCTGCGAAGGGAAAGAGCACGAACAAACGTATCCACTGGCGGTCAACGTCACGTATCAAAACGGAGATCGC
GGGAAGTCAGGGCTCAAACAGACAGGATACGCGGCGTACGGTCTGGAAGACCGAACGCCGCGGCAAGTGGCGCAGGTCTACAACCACCGGGCACAGATTG
AGAAGAGCTACGAGACATTCCGGAAAGCGCGTGCTCTGACAACAACACCATCGACGACAATTCGGCTGTTCTACGTGGGCGTTGGGTTCCTGCTGGAGCA
GTTGTGGGTTGTGTTGCAGTGGGCAGTGCTCGCCCGGCCACGGCGTGGCGGGCGAGCACTTCCGACCGATTTCACGTTCAACGACGCGTTTCTCCATGGG
GTCGAAGAGGTGCTGGACGATGAGCTCGGCTGGAAAGATGAACACCAGACGAACGACCAGGGACTACCAGCAGGGCACGAACACGGACTCGGGTAAGCCG
CCTCGCTTCGGGCGAAGCGAGGCTGGCGACCAGCGACAGCTGTATCTGAATTGCGGCTTCAACACAGAGCTCAGTAGAGACAAGTAGTAAACTCGATATC
TGTTTAGATCACTGAGACAGCTGTTGGCGTCTTTGTCTTGTTTCGACGTCTTCCGGACGTGAAGTTTTACTTTCGCGGCTGCGGTTATCGGTAGAGTGGA
CAACTAGCG
GTGACGTGAACCTACCAAAGCTCAAACGAATCCTCACCGATCCGGACGAGTTCATTTCGAACAGCCAGTTGAAATCTCTTAGCATGGAGTTGCTTGAGTT
GATACCCATGGAAGGAATCGAGGGCTCTGGCCTCGATTCCGACCAGATCATGGAAGTCGTTTTACGAGCTGCTGTTGACCAGACATCGGTCAACGGTGTC
ACAACCAGCACTGAGGACACACCAAACCGGGAGACAGTGATGGATTGGCTCCACACGCTGGAAAAAGAGACAATGCTTGATGCTGTCAACGACATTCTCG
CGCTGGTAGCTATGACGGTTCTCGACCGCGACGGGTCGAGAACCATCTGCATCGACTTCATGAACAACCCATTCCACGGCTGTCCAGACGATGAAGACGA
ATTCCGGCGGATGAGTGCCCGCGACGGCACTACAAAGTGTCACCGCTACTGTACAGCGTTTGTTCTTGCACAGGGGAAACCGCTGACGCTGGCGGTTGAC
CCGGTTGATGGCAAAGATAGCAAGGCCGACGCGGTCGAGCGTGTGCTCGCCCGCGTCGAGACTTACCCGTTCGAGATCGATCAGATTCTCATGGACAGAG
ACGCCTTCTGTGGCGAGTTAATCGGCGTTCTCCGTGAGGCAGCACCGCCGGTCTTTCCGGTGAGAACCGGGAAAGAAACCCTCGAAGAGAAGCTCACAAC
GGGTTCCTCGTACATGACTGAGGAGATAATCTGCGAAGGGAAAGAGCACGAACAAACGTATCCACTGGCGGTCAACGTCACGTATCAAAACGGAGATCGC
GGGAAGTCAGGGCTCAAACAGACAGGATACGCGGCGTACGGTCTGGAAGACCGAACGCCGCGGCAAGTGGCGCAGGTCTACAACCACCGGGCACAGATTG
AGAAGAGCTACGAGACATTCCGGAAAGCGCGTGCTCTGACAACAACACCATCGACGACAATTCGGCTGTTCTACGTGGGCGTTGGGTTCCTGCTGGAGCA
GTTGTGGGTTGTGTTGCAGTGGGCAGTGCTCGCCCGGCCACGGCGTGGCGGGCGAGCACTTCCGACCGATTTCACGTTCAACGACGCGTTTCTCCATGGG
GTCGAAGAGGTGCTGGACGATGAGCTCGGCTGGAAAGATGAACACCAGACGAACGACCAGGGACTACCAGCAGGGCACGAACACGGACTCGGGTAAGCCG
CCTCGCTTCGGGCGAAGCGAGGCTGGCGACCAGCGACAGCTGTATCTGAATTGCGGCTTCAACACAGAGCTCAGTAGAGACAAGTAGTAAACTCGATATC
TGTTTAGATCACTGAGACAGCTGTTGGCGTCTTTGTCTTGTTTCGACGTCTTCCGGACGTGAAGTTTTACTTTCGCGGCTGCGGTTATCGGTAGAGTGGA
CAACTAGCG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1200 bp | 399 aa | 97 | 1296 | + | No |
Chemistry : DDE
ORF sequence :
MCDVNLPKLKRILTDPDEFISNSQLKSLSMELLELIPMEGIEGSGLDSDQIMEVVLRAAVDQTSVNGVTTSTEDTPNRETVMDWLHTLEKETMLDAVNDI
LALVAMTVLDRDGSRTICIDFMNNPFHGCPDDEDEFRRMSARDGTTKCHRYCTAFVLAQGKPLTLAVDPVDGKDSKADAVERVLARVETYPFEIDQILMD
RDAFCGELIGVLREAAPPVFPVRTGKETLEEKLTTGSSYMTEEIICEGKEHEQTYPLAVNVTYQNGDRGKSGLKQTGYAAYGLEDRTPRQVAQVYNHRAQ
IEKSYETFRKARALTTTPSTTIRLFYVGVGFLLEQLWVVLQWAVLARPRRGGRALPTDFTFNDAFLHGVEEVLDDELGWKDEHQTNDQGLPAGHEHGLG
LALVAMTVLDRDGSRTICIDFMNNPFHGCPDDEDEFRRMSARDGTTKCHRYCTAFVLAQGKPLTLAVDPVDGKDSKADAVERVLARVETYPFEIDQILMD
RDAFCGELIGVLREAAPPVFPVRTGKETLEEKLTTGSSYMTEEIICEGKEHEQTYPLAVNVTYQNGDRGKSGLKQTGYAAYGLEDRTPRQVAQVYNHRAQ
IEKSYETFRKARALTTTPSTTIRLFYVGVGFLLEQLWVVLQWAVLARPRRGGRALPTDFTFNDAFLHGVEEVLDDELGWKDEHQTNDQGLPAGHEHGLG
Blast result :
Comments
ISHwa12 is 49% aa similar to ISMbu7.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968