ISHwa12

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1509 bp

Ends


IR Length : 17

IRL : CGCTAGTTGTCCACTCTGTCTCAGTGATGCCGTCGCTGACATATAGTGCC
IRR : CGCTAGTTGTCCACTCTACCGATAACCGCAGCCGCGAAAGTAAAACTTCA

Insertion site


Left flankDirect repeatRight flankDR Length
CGATTGTCGTATAATGGGTGAAGAA5
GCTAATGTCCAATGTAGCCGAAAGT5
CGAGATATCGAATATATGGCTATTA5
GTGACAATCCATATTAGACCGCAAC5
TGTGATGCGTATAATGAGCTCTATG5
ATTCAACCGCACTATCCGTTTGTTC5

DNA sequence

CGCTAGTTGTCCACTCTGTCTCAGTGATGCCGTCGCTGACATATAGTGCCAGATGAAGCGGGTGAATCAGGAAGCTGATTCATCCGCTGCCCGGATGTGT
GTGACGTGAACCTACCAAAGCTCAAACGAATCCTCACCGATCCGGACGAGTTCATTTCGAACAGCCAGTTGAAATCTCTTAGCATGGAGTTGCTTGAGTT
GATACCCATGGAAGGAATCGAGGGCTCTGGCCTCGATTCCGACCAGATCATGGAAGTCGTTTTACGAGCTGCTGTTGACCAGACATCGGTCAACGGTGTC
ACAACCAGCACTGAGGACACACCAAACCGGGAGACAGTGATGGATTGGCTCCACACGCTGGAAAAAGAGACAATGCTTGATGCTGTCAACGACATTCTCG
CGCTGGTAGCTATGACGGTTCTCGACCGCGACGGGTCGAGAACCATCTGCATCGACTTCATGAACAACCCATTCCACGGCTGTCCAGACGATGAAGACGA
ATTCCGGCGGATGAGTGCCCGCGACGGCACTACAAAGTGTCACCGCTACTGTACAGCGTTTGTTCTTGCACAGGGGAAACCGCTGACGCTGGCGGTTGAC
CCGGTTGATGGCAAAGATAGCAAGGCCGACGCGGTCGAGCGTGTGCTCGCCCGCGTCGAGACTTACCCGTTCGAGATCGATCAGATTCTCATGGACAGAG
ACGCCTTCTGTGGCGAGTTAATCGGCGTTCTCCGTGAGGCAGCACCGCCGGTCTTTCCGGTGAGAACCGGGAAAGAAACCCTCGAAGAGAAGCTCACAAC
GGGTTCCTCGTACATGACTGAGGAGATAATCTGCGAAGGGAAAGAGCACGAACAAACGTATCCACTGGCGGTCAACGTCACGTATCAAAACGGAGATCGC
GGGAAGTCAGGGCTCAAACAGACAGGATACGCGGCGTACGGTCTGGAAGACCGAACGCCGCGGCAAGTGGCGCAGGTCTACAACCACCGGGCACAGATTG
AGAAGAGCTACGAGACATTCCGGAAAGCGCGTGCTCTGACAACAACACCATCGACGACAATTCGGCTGTTCTACGTGGGCGTTGGGTTCCTGCTGGAGCA
GTTGTGGGTTGTGTTGCAGTGGGCAGTGCTCGCCCGGCCACGGCGTGGCGGGCGAGCACTTCCGACCGATTTCACGTTCAACGACGCGTTTCTCCATGGG
GTCGAAGAGGTGCTGGACGATGAGCTCGGCTGGAAAGATGAACACCAGACGAACGACCAGGGACTACCAGCAGGGCACGAACACGGACTCGGGTAAGCCG
CCTCGCTTCGGGCGAAGCGAGGCTGGCGACCAGCGACAGCTGTATCTGAATTGCGGCTTCAACACAGAGCTCAGTAGAGACAAGTAGTAAACTCGATATC
TGTTTAGATCACTGAGACAGCTGTTGGCGTCTTTGTCTTGTTTCGACGTCTTCCGGACGTGAAGTTTTACTTTCGCGGCTGCGGTTATCGGTAGAGTGGA
CAACTAGCG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1200 bp399 aa971296+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MCDVNLPKLKRILTDPDEFISNSQLKSLSMELLELIPMEGIEGSGLDSDQIMEVVLRAAVDQTSVNGVTTSTEDTPNRETVMDWLHTLEKETMLDAVNDI
LALVAMTVLDRDGSRTICIDFMNNPFHGCPDDEDEFRRMSARDGTTKCHRYCTAFVLAQGKPLTLAVDPVDGKDSKADAVERVLARVETYPFEIDQILMD
RDAFCGELIGVLREAAPPVFPVRTGKETLEEKLTTGSSYMTEEIICEGKEHEQTYPLAVNVTYQNGDRGKSGLKQTGYAAYGLEDRTPRQVAQVYNHRAQ
IEKSYETFRKARALTTTPSTTIRLFYVGVGFLLEQLWVVLQWAVLARPRRGGRALPTDFTFNDAFLHGVEEVLDDELGWKDEHQTNDQGLPAGHEHGLG

 

Blast result :
Comments
ISHwa12 is 49% aa similar to ISMbu7.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968