ISHwa10
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1598 bp
Ends
IR Length : 15/17
IRL : GTATGTGTTTACTCCCAGAACGATTTCGCCACTCTCTAGTAAATTGCTCT
IRR : GTATGTCTTTACCCCGATGATTCAACTGCCGGCACGGTTTGAGCCCGTGG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
CAGACGTTTA | GAATGCTG | GAAGTCCACC | 8 |
TCAATACAAT | AGCTGTTA | AATATAAGAA | 8 |
DNA sequence
GTATGTGTTTACTCCCAGAACGATTTCGCCACTCTCTAGTAAATTGCTCTTGACTCTGCGATAGAGCAATGCAGACGACAAGGTGTTTTCTGAGGGACGG
TCTCCCTGCCGGAGACCGTCCTGTGTCGTCTGCACTGGTTGAGGTGTATTGTGATGGTCACTGATAAGAAGGTGGAGCAACTGCTTGAGCGGATCACTCA
TCTCGAAAATCGCATTGATGAACTTGAGCAGGAGAATAAAGAGCTCAAGCAAGCAAATCAGCAACTCCGGAAAGAGAACAAGCGTCTCAGAGCCAAGCTT
CGGTGGTACGAGGGACCACATACACCACCGAGCAAAGACCAATCGGACCAGGAGGAGTCGTCCTCGTCCACACCGGACGAGGACGACGAACAACCACGTA
CTGACGGTGGCACCCCTGGTCGAAAGTCCGGACATGATCCGGAATGGCGCGACGCTCCTGACCCTGATCGAGAAATCGAGGTTACCTGTGACTGCTGTCC
AGACTGTGGTGAAGCGTTCGACGAGTCGGCGGGCGTCAGCCCCCGACTCGTCGAGGAACTCCCGGATCCACAGCCGCCAGAGGTCACACAGTACAACCGC
CACCACTACGAGTGTCACTCTTGTGGTGCCGAAACTGTCGCCTCACATCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAATGTCATTGCACAGGCGG
CGCTCTCTCGGTACGATCACCGCCTTCCCTACCGGAAGATCGGCGATCGCTTCGAACAACTCCACGGACTGGAACTGTCAGGCGCGTCCGCATGGCACTC
GACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAATACGAACAGATTCGCCGTCAGATCCAGCAAGCCGGCGTTGTCCACGTTGACGAGACTGGAATCAAA
CGCGACGGCGAACAGGCATGGATCTGGACGTTCACTACCGAGGAACACACGCTGTACGCAGTCAGAGAGAGTCGAGGAAGTGATGTTCCCGCGGAAGTCC
TCGGCGAGGACTTCGCAGGAACGGTCGTCTGTGATGGGTGGACGGCGTATCCGGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTTTACGGGA
GGCTGAAGATGCCGCCGACAAACAGGTGGAAGGCGAACCAATCTACCGTGCCCTCAAGCAGCTGTACGTCGCTCTCCAGACCCGGCTGGAGAGCGACTTG
ACAGTCCGTGAGCGAGCAGAACTCCAACTTGTGGCGCGGAGAGAGCTTGAATCGCTGATAGAACGGTCAGTCCCTGACGGACCAGTGGCAACACTACTCG
GGAAGATCGAAAGGGGTCTCGACCACTGGCTCACCTTCATTGGTGAGCCAGCGGTCTCTCCAACGAATAATTCGGCTGAAAACGCCCTCCGTGAGCCCGT
AGTTCTCCGGAAAATCATCGGAACTCTCCGCAATGACCGCGGGATGTTCGTTCACGAAACGTTGCTGTCCCTGCTGGCGACATGGCGCCAGCAGGGACGC
AATCCCTATGGCGAATTCAAGCGGGTCTCCCAAGATAATGAGATGATTCCACGGGCTCAAACCGTGCCGGCAGTTGAATCATCGGGGTAAAGACATAC
TCTCCCTGCCGGAGACCGTCCTGTGTCGTCTGCACTGGTTGAGGTGTATTGTGATGGTCACTGATAAGAAGGTGGAGCAACTGCTTGAGCGGATCACTCA
TCTCGAAAATCGCATTGATGAACTTGAGCAGGAGAATAAAGAGCTCAAGCAAGCAAATCAGCAACTCCGGAAAGAGAACAAGCGTCTCAGAGCCAAGCTT
CGGTGGTACGAGGGACCACATACACCACCGAGCAAAGACCAATCGGACCAGGAGGAGTCGTCCTCGTCCACACCGGACGAGGACGACGAACAACCACGTA
CTGACGGTGGCACCCCTGGTCGAAAGTCCGGACATGATCCGGAATGGCGCGACGCTCCTGACCCTGATCGAGAAATCGAGGTTACCTGTGACTGCTGTCC
AGACTGTGGTGAAGCGTTCGACGAGTCGGCGGGCGTCAGCCCCCGACTCGTCGAGGAACTCCCGGATCCACAGCCGCCAGAGGTCACACAGTACAACCGC
CACCACTACGAGTGTCACTCTTGTGGTGCCGAAACTGTCGCCTCACATCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAATGTCATTGCACAGGCGG
CGCTCTCTCGGTACGATCACCGCCTTCCCTACCGGAAGATCGGCGATCGCTTCGAACAACTCCACGGACTGGAACTGTCAGGCGCGTCCGCATGGCACTC
GACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAATACGAACAGATTCGCCGTCAGATCCAGCAAGCCGGCGTTGTCCACGTTGACGAGACTGGAATCAAA
CGCGACGGCGAACAGGCATGGATCTGGACGTTCACTACCGAGGAACACACGCTGTACGCAGTCAGAGAGAGTCGAGGAAGTGATGTTCCCGCGGAAGTCC
TCGGCGAGGACTTCGCAGGAACGGTCGTCTGTGATGGGTGGACGGCGTATCCGGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTTTACGGGA
GGCTGAAGATGCCGCCGACAAACAGGTGGAAGGCGAACCAATCTACCGTGCCCTCAAGCAGCTGTACGTCGCTCTCCAGACCCGGCTGGAGAGCGACTTG
ACAGTCCGTGAGCGAGCAGAACTCCAACTTGTGGCGCGGAGAGAGCTTGAATCGCTGATAGAACGGTCAGTCCCTGACGGACCAGTGGCAACACTACTCG
GGAAGATCGAAAGGGGTCTCGACCACTGGCTCACCTTCATTGGTGAGCCAGCGGTCTCTCCAACGAATAATTCGGCTGAAAACGCCCTCCGTGAGCCCGT
AGTTCTCCGGAAAATCATCGGAACTCTCCGCAATGACCGCGGGATGTTCGTTCACGAAACGTTGCTGTCCCTGCTGGCGACATGGCGCCAGCAGGGACGC
AATCCCTATGGCGAATTCAAGCGGGTCTCCCAAGATAATGAGATGATTCCACGGGCTCAAACCGTGCCGGCAGTTGAATCATCGGGGTAAAGACATAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1437 bp | 478 aa | 154 | 1590 | + | No |
Chemistry : DDE
ORF sequence :
MVTDKKVEQLLERITHLENRIDELEQENKELKQANQQLRKENKRLRAKLRWYEGPHTPPSKDQSDQEESSSSTPDEDDEQPRTDGGTPGRKSGHDPEWRD
APDPDREIEVTCDCCPDCGEAFDESAGVSPRLVEELPDPQPPEVTQYNRHHYECHSCGAETVASHPDCPDEGQFGVNVIAQAALSRYDHRLPYRKIGDRF
EQLHGLELSGASAWHSTERAARAGRCEYEQIRRQIQQAGVVHVDETGIKRDGEQAWIWTFTTEEHTLYAVRESRGSDVPAEVLGEDFAGTVVCDGWTAYP
AFSSNLQRCWAHILREAEDAADKQVEGEPIYRALKQLYVALQTRLESDLTVRERAELQLVARRELESLIERSVPDGPVATLLGKIERGLDHWLTFIGEPA
VSPTNNSAENALREPVVLRKIIGTLRNDRGMFVHETLLSLLATWRQQGRNPYGEFKRVSQDNEMIPRAQTVPAVESSG
APDPDREIEVTCDCCPDCGEAFDESAGVSPRLVEELPDPQPPEVTQYNRHHYECHSCGAETVASHPDCPDEGQFGVNVIAQAALSRYDHRLPYRKIGDRF
EQLHGLELSGASAWHSTERAARAGRCEYEQIRRQIQQAGVVHVDETGIKRDGEQAWIWTFTTEEHTLYAVRESRGSDVPAEVLGEDFAGTVVCDGWTAYP
AFSSNLQRCWAHILREAEDAADKQVEGEPIYRALKQLYVALQTRLESDLTVRERAELQLVARRELESLIERSVPDGPVATLLGKIERGLDHWLTFIGEPA
VSPTNNSAENALREPVVLRKIIGTLRNDRGMFVHETLLSLLATWRQQGRNPYGEFKRVSQDNEMIPRAQTVPAVESSG
Blast result :
Comments
ISHwa10 is 88% aa similar to ISH10.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968