ISHwa10

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1598 bp

Ends


IR Length : 15/17

IRL : GTATGTGTTTACTCCCAGAACGATTTCGCCACTCTCTAGTAAATTGCTCT
IRR : GTATGTCTTTACCCCGATGATTCAACTGCCGGCACGGTTTGAGCCCGTGG

Insertion site


Left flankDirect repeatRight flankDR Length
CAGACGTTTAGAATGCTGGAAGTCCACC8
TCAATACAATAGCTGTTAAATATAAGAA8

DNA sequence

GTATGTGTTTACTCCCAGAACGATTTCGCCACTCTCTAGTAAATTGCTCTTGACTCTGCGATAGAGCAATGCAGACGACAAGGTGTTTTCTGAGGGACGG
TCTCCCTGCCGGAGACCGTCCTGTGTCGTCTGCACTGGTTGAGGTGTATTGTGATGGTCACTGATAAGAAGGTGGAGCAACTGCTTGAGCGGATCACTCA
TCTCGAAAATCGCATTGATGAACTTGAGCAGGAGAATAAAGAGCTCAAGCAAGCAAATCAGCAACTCCGGAAAGAGAACAAGCGTCTCAGAGCCAAGCTT
CGGTGGTACGAGGGACCACATACACCACCGAGCAAAGACCAATCGGACCAGGAGGAGTCGTCCTCGTCCACACCGGACGAGGACGACGAACAACCACGTA
CTGACGGTGGCACCCCTGGTCGAAAGTCCGGACATGATCCGGAATGGCGCGACGCTCCTGACCCTGATCGAGAAATCGAGGTTACCTGTGACTGCTGTCC
AGACTGTGGTGAAGCGTTCGACGAGTCGGCGGGCGTCAGCCCCCGACTCGTCGAGGAACTCCCGGATCCACAGCCGCCAGAGGTCACACAGTACAACCGC
CACCACTACGAGTGTCACTCTTGTGGTGCCGAAACTGTCGCCTCACATCCCGACTGCCCCGATGAGGGGCAGTTCGGGGTGAATGTCATTGCACAGGCGG
CGCTCTCTCGGTACGATCACCGCCTTCCCTACCGGAAGATCGGCGATCGCTTCGAACAACTCCACGGACTGGAACTGTCAGGCGCGTCCGCATGGCACTC
GACCGAGCGCGCTGCGCGCGCCGGTCGCTGTGAATACGAACAGATTCGCCGTCAGATCCAGCAAGCCGGCGTTGTCCACGTTGACGAGACTGGAATCAAA
CGCGACGGCGAACAGGCATGGATCTGGACGTTCACTACCGAGGAACACACGCTGTACGCAGTCAGAGAGAGTCGAGGAAGTGATGTTCCCGCGGAAGTCC
TCGGCGAGGACTTCGCAGGAACGGTCGTCTGTGATGGGTGGACGGCGTATCCGGCTTTCAGCAGCAACCTCCAGCGGTGTTGGGCGCATATTTTACGGGA
GGCTGAAGATGCCGCCGACAAACAGGTGGAAGGCGAACCAATCTACCGTGCCCTCAAGCAGCTGTACGTCGCTCTCCAGACCCGGCTGGAGAGCGACTTG
ACAGTCCGTGAGCGAGCAGAACTCCAACTTGTGGCGCGGAGAGAGCTTGAATCGCTGATAGAACGGTCAGTCCCTGACGGACCAGTGGCAACACTACTCG
GGAAGATCGAAAGGGGTCTCGACCACTGGCTCACCTTCATTGGTGAGCCAGCGGTCTCTCCAACGAATAATTCGGCTGAAAACGCCCTCCGTGAGCCCGT
AGTTCTCCGGAAAATCATCGGAACTCTCCGCAATGACCGCGGGATGTTCGTTCACGAAACGTTGCTGTCCCTGCTGGCGACATGGCGCCAGCAGGGACGC
AATCCCTATGGCGAATTCAAGCGGGTCTCCCAAGATAATGAGATGATTCCACGGGCTCAAACCGTGCCGGCAGTTGAATCATCGGGGTAAAGACATAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1437 bp478 aa1541590+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MVTDKKVEQLLERITHLENRIDELEQENKELKQANQQLRKENKRLRAKLRWYEGPHTPPSKDQSDQEESSSSTPDEDDEQPRTDGGTPGRKSGHDPEWRD
APDPDREIEVTCDCCPDCGEAFDESAGVSPRLVEELPDPQPPEVTQYNRHHYECHSCGAETVASHPDCPDEGQFGVNVIAQAALSRYDHRLPYRKIGDRF
EQLHGLELSGASAWHSTERAARAGRCEYEQIRRQIQQAGVVHVDETGIKRDGEQAWIWTFTTEEHTLYAVRESRGSDVPAEVLGEDFAGTVVCDGWTAYP
AFSSNLQRCWAHILREAEDAADKQVEGEPIYRALKQLYVALQTRLESDLTVRERAELQLVARRELESLIERSVPDGPVATLLGKIERGLDHWLTFIGEPA
VSPTNNSAENALREPVVLRKIIGTLRNDRGMFVHETLLSLLATWRQQGRNPYGEFKRVSQDNEMIPRAQTVPAVESSG

 

Blast result :
Comments
ISHwa10 is 88% aa similar to ISH10.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968