ISHwa11

  • Family IS66
  • Group ISBst12
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1579 bp

Ends


IR Length : 16/20

IRL : GTAGTTGGATAGCAGCTCCATGCCAAGACGATTTCGTAGCAGTCTCATAG
IRR : GTAGTTGGATAGCGAGACCAAGAGACACCGCCCAGTGATGCCTCTTGTCC

Insertion site


Left flankDirect repeatRight flankDR Length
GTAATCAATAACATCACTCAAGATATCC8

DNA sequence

GTAGTTGGATAGCAGCTCCATGCCAAGACGATTTCGTAGCAGTCTCATAGATCGTTCATCAATACGGAACTACTGTGTCGCTGAGGAGTCGCGGATCAAC
GGAATCGACAGATTCCGTGATCCGCACCGATGATAGTTCGCTACTCCGCCAGCAGCTGGTAATCAAAGAGCTTGAGAACCGGTTTCTACGCCGCCAGATC
ACTACACAACAACAGGAGATCGAACAGCTTGAGGCTCGCCTCAAGCAGTACGAAAACCCAAACACACCACCCAGTAAGCAGGGTGGTGCGGCTAAATCAC
CTGGTAGAGACGATCAAGACGGGGATGAAGACGAAGAATCTGAAGAAGATGATGCTGGCGGCGACCCTGACGCCGCCAGCGACTCTTCACCAGGACGGAG
TGAAGGTCACGAAGGGACAACTCGACCGCCACCAGAACCCGAAGAGACGATTCGGGTTGATCAGGGATACTGTCCAGACTGTGAGCAAATCCTCTCGAAC
CCTGAGAACTACGTCTCACAAACTGTTATCGATGTCCCGCTTCCTGTTCCAACCACCGTCGTAAAGTACGAACTCGGTAAACACCACTGTTCGTGCGGAA
ACGAGGTCGTTGCTGAGCATCCCGACTGCCCAAAAAAGGGGCGGTTTGGGCCAAATATCATGGCCCAAACCGCTCTCAGTCGGTTCCATCAACGACTGCC
AAACCGGAAGCAAGCCGAGCTATTTGACTGGGAGCTTGATCATCCAGTCTCCCACCGGACGATCTACAACCTGACCAAGCGGGTCGCAGACCGGCTGCGA
CCCGCATACAACGATATCAAAGAGAAGATTCGGGAGAGTAATGTCGTCTACTGCGACGAAACAGGCTTTCCGGTTGACGGAGAGCAACACTGGGCGTGGA
CGTTCGTCACTGATGACGAGGTGCTGTTCTGGGTTGATGAGAGCCGTGGAAGTGGAGTCTTAGAAGACGTCCTCGGCGAGGAATTCGCCGAGGACTCGAC
GCTCAGTTGTGACGGTTGGTCAGCGTATTCGAGTTATCACACGAAACTTCAGCGGTGCTGGGCGCACCTGTCACGGGAGGCTGAGTACGTCGCTGAACGG
TACGAGGAAGCAGAGCGGCTGTCTGAAGAGTTGCATGCACTCCACGACGATCTAACGACGTTCGTCGAAGGAGAGCCGTCGGCTTCCGCCCGCGAACAGA
AGCGGGCGGAAGCGTCCTTGCACTTAGAGGGGCTGATTAGGGAAGATTACGAGGTCCGAGAGGTTCAGCAGCTGATCAAGAAGATCAGCAACGGGTTGGG
TCATTGGCTGACGTTCATGACTGAGCCAGGCGTTGACTCGACGAATAATCGCGCAGAGCGGGCTCTGCGCGAGCAAGTAGTCCTTCGGAAGATGTTTCGG
ACCCTCCGTTCGGCAGAAGGGGTCCAGATTCACGAGACAATAACAACGATGTTGGCGACGTGGAAACGACGAGGACTTGATCCACCTGAACAGCTCCAGT
CAATTCTAGGTGGGAGAGAGCTTCGGTAAGGACAAGAGGCATCACTGGGCGGTGTCTCTTGGTCTCGCTATCCAACTAC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1455 bp484 aa751529+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSLRSRGSTESTDSVIRTDDSSLLRQQLVIKELENRFLRRQITTQQQEIEQLEARLKQYENPNTPPSKQGGAAKSPGRDDQDGDEDEESEEDDAGGDPDA
ASDSSPGRSEGHEGTTRPPPEPEETIRVDQGYCPDCEQILSNPENYVSQTVIDVPLPVPTTVVKYELGKHHCSCGNEVVAEHPDCPKKGRFGPNIMAQTA
LSRFHQRLPNRKQAELFDWELDHPVSHRTIYNLTKRVADRLRPAYNDIKEKIRESNVVYCDETGFPVDGEQHWAWTFVTDDEVLFWVDESRGSGVLEDVL
GEEFAEDSTLSCDGWSAYSSYHTKLQRCWAHLSREAEYVAERYEEAERLSEELHALHDDLTTFVEGEPSASAREQKRAEASLHLEGLIREDYEVREVQQL
IKKISNGLGHWLTFMTEPGVDSTNNRAERALREQVVLRKMFRTLRSAEGVQIHETITTMLATWKRRGLDPPEQLQSILGGRELR

 

Blast result :
Comments
ISHwa11 is 57% aa similar to ISArch15.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968