ISHwa11
- Family IS66
- Group ISBst12
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1579 bp
Ends
IR Length : 16/20
IRL : GTAGTTGGATAGCAGCTCCATGCCAAGACGATTTCGTAGCAGTCTCATAG
IRR : GTAGTTGGATAGCGAGACCAAGAGACACCGCCCAGTGATGCCTCTTGTCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GTAATCAATA | ACATCACT | CAAGATATCC | 8 |
DNA sequence
GTAGTTGGATAGCAGCTCCATGCCAAGACGATTTCGTAGCAGTCTCATAGATCGTTCATCAATACGGAACTACTGTGTCGCTGAGGAGTCGCGGATCAAC
GGAATCGACAGATTCCGTGATCCGCACCGATGATAGTTCGCTACTCCGCCAGCAGCTGGTAATCAAAGAGCTTGAGAACCGGTTTCTACGCCGCCAGATC
ACTACACAACAACAGGAGATCGAACAGCTTGAGGCTCGCCTCAAGCAGTACGAAAACCCAAACACACCACCCAGTAAGCAGGGTGGTGCGGCTAAATCAC
CTGGTAGAGACGATCAAGACGGGGATGAAGACGAAGAATCTGAAGAAGATGATGCTGGCGGCGACCCTGACGCCGCCAGCGACTCTTCACCAGGACGGAG
TGAAGGTCACGAAGGGACAACTCGACCGCCACCAGAACCCGAAGAGACGATTCGGGTTGATCAGGGATACTGTCCAGACTGTGAGCAAATCCTCTCGAAC
CCTGAGAACTACGTCTCACAAACTGTTATCGATGTCCCGCTTCCTGTTCCAACCACCGTCGTAAAGTACGAACTCGGTAAACACCACTGTTCGTGCGGAA
ACGAGGTCGTTGCTGAGCATCCCGACTGCCCAAAAAAGGGGCGGTTTGGGCCAAATATCATGGCCCAAACCGCTCTCAGTCGGTTCCATCAACGACTGCC
AAACCGGAAGCAAGCCGAGCTATTTGACTGGGAGCTTGATCATCCAGTCTCCCACCGGACGATCTACAACCTGACCAAGCGGGTCGCAGACCGGCTGCGA
CCCGCATACAACGATATCAAAGAGAAGATTCGGGAGAGTAATGTCGTCTACTGCGACGAAACAGGCTTTCCGGTTGACGGAGAGCAACACTGGGCGTGGA
CGTTCGTCACTGATGACGAGGTGCTGTTCTGGGTTGATGAGAGCCGTGGAAGTGGAGTCTTAGAAGACGTCCTCGGCGAGGAATTCGCCGAGGACTCGAC
GCTCAGTTGTGACGGTTGGTCAGCGTATTCGAGTTATCACACGAAACTTCAGCGGTGCTGGGCGCACCTGTCACGGGAGGCTGAGTACGTCGCTGAACGG
TACGAGGAAGCAGAGCGGCTGTCTGAAGAGTTGCATGCACTCCACGACGATCTAACGACGTTCGTCGAAGGAGAGCCGTCGGCTTCCGCCCGCGAACAGA
AGCGGGCGGAAGCGTCCTTGCACTTAGAGGGGCTGATTAGGGAAGATTACGAGGTCCGAGAGGTTCAGCAGCTGATCAAGAAGATCAGCAACGGGTTGGG
TCATTGGCTGACGTTCATGACTGAGCCAGGCGTTGACTCGACGAATAATCGCGCAGAGCGGGCTCTGCGCGAGCAAGTAGTCCTTCGGAAGATGTTTCGG
ACCCTCCGTTCGGCAGAAGGGGTCCAGATTCACGAGACAATAACAACGATGTTGGCGACGTGGAAACGACGAGGACTTGATCCACCTGAACAGCTCCAGT
CAATTCTAGGTGGGAGAGAGCTTCGGTAAGGACAAGAGGCATCACTGGGCGGTGTCTCTTGGTCTCGCTATCCAACTAC
GGAATCGACAGATTCCGTGATCCGCACCGATGATAGTTCGCTACTCCGCCAGCAGCTGGTAATCAAAGAGCTTGAGAACCGGTTTCTACGCCGCCAGATC
ACTACACAACAACAGGAGATCGAACAGCTTGAGGCTCGCCTCAAGCAGTACGAAAACCCAAACACACCACCCAGTAAGCAGGGTGGTGCGGCTAAATCAC
CTGGTAGAGACGATCAAGACGGGGATGAAGACGAAGAATCTGAAGAAGATGATGCTGGCGGCGACCCTGACGCCGCCAGCGACTCTTCACCAGGACGGAG
TGAAGGTCACGAAGGGACAACTCGACCGCCACCAGAACCCGAAGAGACGATTCGGGTTGATCAGGGATACTGTCCAGACTGTGAGCAAATCCTCTCGAAC
CCTGAGAACTACGTCTCACAAACTGTTATCGATGTCCCGCTTCCTGTTCCAACCACCGTCGTAAAGTACGAACTCGGTAAACACCACTGTTCGTGCGGAA
ACGAGGTCGTTGCTGAGCATCCCGACTGCCCAAAAAAGGGGCGGTTTGGGCCAAATATCATGGCCCAAACCGCTCTCAGTCGGTTCCATCAACGACTGCC
AAACCGGAAGCAAGCCGAGCTATTTGACTGGGAGCTTGATCATCCAGTCTCCCACCGGACGATCTACAACCTGACCAAGCGGGTCGCAGACCGGCTGCGA
CCCGCATACAACGATATCAAAGAGAAGATTCGGGAGAGTAATGTCGTCTACTGCGACGAAACAGGCTTTCCGGTTGACGGAGAGCAACACTGGGCGTGGA
CGTTCGTCACTGATGACGAGGTGCTGTTCTGGGTTGATGAGAGCCGTGGAAGTGGAGTCTTAGAAGACGTCCTCGGCGAGGAATTCGCCGAGGACTCGAC
GCTCAGTTGTGACGGTTGGTCAGCGTATTCGAGTTATCACACGAAACTTCAGCGGTGCTGGGCGCACCTGTCACGGGAGGCTGAGTACGTCGCTGAACGG
TACGAGGAAGCAGAGCGGCTGTCTGAAGAGTTGCATGCACTCCACGACGATCTAACGACGTTCGTCGAAGGAGAGCCGTCGGCTTCCGCCCGCGAACAGA
AGCGGGCGGAAGCGTCCTTGCACTTAGAGGGGCTGATTAGGGAAGATTACGAGGTCCGAGAGGTTCAGCAGCTGATCAAGAAGATCAGCAACGGGTTGGG
TCATTGGCTGACGTTCATGACTGAGCCAGGCGTTGACTCGACGAATAATCGCGCAGAGCGGGCTCTGCGCGAGCAAGTAGTCCTTCGGAAGATGTTTCGG
ACCCTCCGTTCGGCAGAAGGGGTCCAGATTCACGAGACAATAACAACGATGTTGGCGACGTGGAAACGACGAGGACTTGATCCACCTGAACAGCTCCAGT
CAATTCTAGGTGGGAGAGAGCTTCGGTAAGGACAAGAGGCATCACTGGGCGGTGTCTCTTGGTCTCGCTATCCAACTAC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1455 bp | 484 aa | 75 | 1529 | + | No |
Chemistry : DDE
ORF sequence :
MSLRSRGSTESTDSVIRTDDSSLLRQQLVIKELENRFLRRQITTQQQEIEQLEARLKQYENPNTPPSKQGGAAKSPGRDDQDGDEDEESEEDDAGGDPDA
ASDSSPGRSEGHEGTTRPPPEPEETIRVDQGYCPDCEQILSNPENYVSQTVIDVPLPVPTTVVKYELGKHHCSCGNEVVAEHPDCPKKGRFGPNIMAQTA
LSRFHQRLPNRKQAELFDWELDHPVSHRTIYNLTKRVADRLRPAYNDIKEKIRESNVVYCDETGFPVDGEQHWAWTFVTDDEVLFWVDESRGSGVLEDVL
GEEFAEDSTLSCDGWSAYSSYHTKLQRCWAHLSREAEYVAERYEEAERLSEELHALHDDLTTFVEGEPSASAREQKRAEASLHLEGLIREDYEVREVQQL
IKKISNGLGHWLTFMTEPGVDSTNNRAERALREQVVLRKMFRTLRSAEGVQIHETITTMLATWKRRGLDPPEQLQSILGGRELR
ASDSSPGRSEGHEGTTRPPPEPEETIRVDQGYCPDCEQILSNPENYVSQTVIDVPLPVPTTVVKYELGKHHCSCGNEVVAEHPDCPKKGRFGPNIMAQTA
LSRFHQRLPNRKQAELFDWELDHPVSHRTIYNLTKRVADRLRPAYNDIKEKIRESNVVYCDETGFPVDGEQHWAWTFVTDDEVLFWVDESRGSGVLEDVL
GEEFAEDSTLSCDGWSAYSSYHTKLQRCWAHLSREAEYVAERYEEAERLSEELHALHDDLTTFVEGEPSASAREQKRAEASLHLEGLIREDYEVREVQQL
IKKISNGLGHWLTFMTEPGVDSTNNRAERALREQVVLRKMFRTLRSAEGVQIHETITTMLATWKRRGLDPPEQLQSILGGRELR
Blast result :
Comments
ISHwa11 is 57% aa similar to ISArch15.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968