ISHwa8

  • Family IS4
  • Group IS4Sa
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
AM180088 ND Haloquadratum walsbyi
Haloquadratum walsbyi C23
Haloquadratum walsbyi HBSQ001
DNA section
IS Length : 1509 bp

Ends


IR Length : 20/23

IRL : CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGACCC
IRR : CTGTCGCGTTCTAAGTTGATAAAGCCCGGCGAAATTCTCTCCCAACGAAC

Insertion site


Left flankDirect repeatRight flankDR Length
TCCCATATCTTGCAATTGTGTTCTTATCTCTT8
TGAGCCAGTGTGGATAAGTTTGAATATACACC8
TGTCTGGTCGTTGTCACCGTATGAAACGCTAGA9
CTTTGAGTTTCAAATAGGTCCCTGCCTCTCGT8
TATCATTTCGAGGCTTGAAGTCGAAACTGTCC8
GTGATGTATTTGTCGCAACGTGGCAACGACCA0
TCTTCATGCCTGTCACTGAATATCCCTCCTTC0
CGCTTATATGCTCTCTATAAGTCAATTATTT7

DNA sequence

CTGTCGCGTTCTGAGTATATAAAAACGGCGTGAGCCGTTAGTGACGACCCGTAATGTCTGTGAATTTGATTCAGCAAACAGGCCGTCAGAAGACGTAACG
GACGCCTCTAACATCAATTCTACTGATCTCGTCGCTGACGAACTGTACTCGCTGCTCGACGAAGTCGACAGCGAGTCGATTGCCGATGAGTTCAAGATTG
GGCTCCATTCCGACAAACACGACTTCACAACCCACGTCAAGACGGCTGTTCGTGAGGGTCTCGACCCCTCCAGCTCACTCGCTGAACTTGAGGATAAGAC
CATTGCCGACGGCTCACTCGAACACATGCCTAAATCACGGTTTTCAGAACTCACGAACGACCGCGACTACTGCGCGGTCGTTCAGCTCCTCTTCGAAGTA
CTGCACACACCACAGTTGTATCATCAACGTGGAGTTCAACGAAAACGACTGGAGTGGATGACACGAGATGTCGTCGCTGTTGATGCCACAAACCTCGAAC
TTACGCGCTCTGTTGTCGTCTCAGACGAGTTCGTCGGAGACGACGACAAGGTCTACAAGATCGACACAGACGATGGTGGTCTCGAACTTCACTGCGCAGC
ACGTGTGGATGGAGAAAATAAACATCCACTCGACGCTACTGTTACAGAGGGCGATACCCACGAAAGCCCGCAGTTCGATCTCCTCAAGGAAGATGTCGAG
GTCTTTGCAGACCTCGACTCGGTAATCTGGGTCTGTGACCGCGCATACACGCGATATCTACGGTTCTGTGAGATCAAGCATAGTGACAATGACTTCGTCA
CACTGATGTACTCAGACGCTCGGTTTGAACTCACTGAGACACTCGAAGAGTTCGAGGTCACCGTCTCAGGGAACAACGCCGCTCAGCCGACTCACTCAGA
TGAGGAATCAACACGACGGGTTCGTGATGAACGAATTGAGTTAGCTGAGACTGGTGAAGAGTTCCGCAGGATTGTGCTGGAAACGCCCGATGGAGAAGAG
ATTGAGTACCTGACGACGCTGGCGTCGTCAGAGTACGATCCAATCGACGTGATCAACATCTACACACTACGGACAGTGATTGAGATCCTCTTCCGAGAGT
GGAAACAGTACCTCAACATCGAGAACTTTCACTCGAAATCGCTGAACGGCGTGTTATTCGAGCTGTTCTGTGCATTGATTGGATATATGCTGGTCGTATG
GTTTCGCCAACGCCACCCAGTCAAGGGTGGCGTGGCGTGTGCTATCCAGAAAGTTCGCACCTTCTGGAATGAGACGCTAGATTCATTCGGCTAATCAGTC
TTCACTTCCCGGCGACAGCCGTCACCCACCAGCAACGGCTGTCGCCTGTGCAGCGATCATTCATCATTTCTTTCCCTGAACTGCTATTTCTCTTGGCTCA
ACACGGATTTCACCGACAACTGTTCGATGAGTGAACTCCCATACGATTCTTACCCAGCAGTTCGTTGGGAGAGAATTTCGCCGGGCTTTATCAACTTAGA
ACGCGACAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1254 bp417 aa411294+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTTRNVCEFDSANRPSEDVTDASNINSTDLVADELYSLLDEVDSESIADEFKIGLHSDKHDFTTHVKTAVREGLDPSSSLAELEDKTIADGSLEHMPKSR
FSELTNDRDYCAVVQLLFEVLHTPQLYHQRGVQRKRLEWMTRDVVAVDATNLELTRSVVVSDEFVGDDDKVYKIDTDDGGLELHCAARVDGENKHPLDAT
VTEGDTHESPQFDLLKEDVEVFADLDSVIWVCDRAYTRYLRFCEIKHSDNDFVTLMYSDARFELTETLEEFEVTVSGNNAAQPTHSDEESTRRVRDERIE
LAETGEEFRRIVLETPDGEEIEYLTTLASSEYDPIDVINIYTLRTVIEILFREWKQYLNIENFHSKSLNGVLFELFCALIGYMLVVWFRQRHPVKGGVAC
AIQKVRTFWNETLDSFG

 

Blast result :
Comments
The integration sites are from two different strains of Haloquadratum walsbyi, HBSQ001 and C23.
ISHwa8 is 44% aa similar to ISFac10.
Additionnal axccession number : FR746099.
References
1] Bolhuis, H., Palm, P., Wende, A., Falb, M., Rampp, M., Rodriguez-Valera, F., Pfeiffer, F., and Oesterhelt, D. (2006) BMC Genomics 7, 169.
2] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968