ISHwa7
- Family IS630
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1142 bp
Ends
IR Length : 15/19
IRL : ATGAGTGAGAAAACCTTTGTTGGTCACGTTCGATTACAGAGCAATGACTG
IRR : ATGATCAAGGAAACTTTTGCAGATCGAGGAACTTCTGACACCAGTCTTTC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AGGAAGATGTCGAGGTCTTT | TA | CAGACCTCGACTCGGTAATC | 2 |
DNA sequence
ATGAGTGAGAAAACCTTTGTTGGTCACGTTCGATTACAGAGCAATGACTGGAGGGCGTCGAAAAGAGATTACGCATCATCTCTCAGAAAAGAAAATCGAT
GAACTCCTTCGTGAAGCCACAGATGATCGTCGGAAAGAGCGGCTCGGGTTTCTGAAGAACCTCTATTACGGCGATTTGATTGCGGAAGCTGCCGACCGGG
AAGGACGGTCGGCAGCGACCGGGAGGCGGTGGGCGGACGCCTGGAACGAAGGTGGGCTTGAGGGACTGATGCCGAGTTTCGGGGGCGGTCGGCCCCCGAA
ACTCGACGAAGACGAACAAGAAGAGCTGTTAGAGATGCTTCGAGACGGTCAACCGTGGAAATCACAGGAGATTCAGCATCTCCTCAAAGAGGAGTTCGAT
GTCGAATATCATCCGGATTACCTTGGGAAAGTTCTCCGTGAACTGGGCTTATCCTACGCAAAACCCCGTCCGAAGCGTCCATATCGACCGGAGAATCCCG
AGGAAATACTCGACGAGCGCGTCGGCGACGCGCTCGACGAGGATGAGACCCCTCACAACAGAGAGGAAGGAGACGACGAAGAAGGGTGGACTGTTGACGA
CGATGTTTGTACAGATGGTGGGACTGTTCTCGGGTTTTTCGATGCGTCACAGCCACAGCCGTACGATAATTCCCGCCGGGTCTGGTACGTAGACGATCCA
CACGTGGAACGGCCATTAGTCAAGACAGAAGAGTCGGCGGTTGGATTCTACGCACTGAATGGGGAGAGTATGGTTCGCTGGAAAGAAACCGAGAAGAAAG
AACGGATTTGCGAGGTGTTAGAAGCGGTTCGCGAGCAGAATCCGGGTCAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTCACACGTCTGTGAATACAC
GCGCAAGCGTGCGCATCAACTTGGAATCGATCTCATCTTCCTTCCATCAGGATCACCGCATCTCAACCCAATCGAGCAGGTCTGGAAATACCTCAAGTGG
ACGACGGCTCCAATCATCGTCGAGGACGAAGACGAGTTCCACGAACTCGTCAGGGACGTATTTGATCAAGTGACACAGCGAATTAGTTTTGCGAAAGACT
GGTGTCAGAAGTTCCTCGATCTGCAAAAGTTTCCTTGATCAT
GAACTCCTTCGTGAAGCCACAGATGATCGTCGGAAAGAGCGGCTCGGGTTTCTGAAGAACCTCTATTACGGCGATTTGATTGCGGAAGCTGCCGACCGGG
AAGGACGGTCGGCAGCGACCGGGAGGCGGTGGGCGGACGCCTGGAACGAAGGTGGGCTTGAGGGACTGATGCCGAGTTTCGGGGGCGGTCGGCCCCCGAA
ACTCGACGAAGACGAACAAGAAGAGCTGTTAGAGATGCTTCGAGACGGTCAACCGTGGAAATCACAGGAGATTCAGCATCTCCTCAAAGAGGAGTTCGAT
GTCGAATATCATCCGGATTACCTTGGGAAAGTTCTCCGTGAACTGGGCTTATCCTACGCAAAACCCCGTCCGAAGCGTCCATATCGACCGGAGAATCCCG
AGGAAATACTCGACGAGCGCGTCGGCGACGCGCTCGACGAGGATGAGACCCCTCACAACAGAGAGGAAGGAGACGACGAAGAAGGGTGGACTGTTGACGA
CGATGTTTGTACAGATGGTGGGACTGTTCTCGGGTTTTTCGATGCGTCACAGCCACAGCCGTACGATAATTCCCGCCGGGTCTGGTACGTAGACGATCCA
CACGTGGAACGGCCATTAGTCAAGACAGAAGAGTCGGCGGTTGGATTCTACGCACTGAATGGGGAGAGTATGGTTCGCTGGAAAGAAACCGAGAAGAAAG
AACGGATTTGCGAGGTGTTAGAAGCGGTTCGCGAGCAGAATCCGGGTCAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTCACACGTCTGTGAATACAC
GCGCAAGCGTGCGCATCAACTTGGAATCGATCTCATCTTCCTTCCATCAGGATCACCGCATCTCAACCCAATCGAGCAGGTCTGGAAATACCTCAAGTGG
ACGACGGCTCCAATCATCGTCGAGGACGAAGACGAGTTCCACGAACTCGTCAGGGACGTATTTGATCAAGTGACACAGCGAATTAGTTTTGCGAAAGACT
GGTGTCAGAAGTTCCTCGATCTGCAAAAGTTTCCTTGATCAT
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1095 bp | 364 aa | 44 | 1138 | + | No |
Chemistry : DDE
ORF sequence :
MTGGRRKEITHHLSEKKIDELLREATDDRRKERLGFLKNLYYGDLIAEAADREGRSAATGRRWADAWNEGGLEGLMPSFGGGRPPKLDEDEQEELLEMLR
DGQPWKSQEIQHLLKEEFDVEYHPDYLGKVLRELGLSYAKPRPKRPYRPENPEEILDERVGDALDEDETPHNREEGDDEEGWTVDDDVCTDGGTVLGFFD
ASQPQPYDNSRRVWYVDDPHVERPLVKTEESAVGFYALNGESMVRWKETEKKERICEVLEAVREQNPGQRILLVLDKHGSHVCEYTRKRAHQLGIDLIFL
PSGSPHLNPIEQVWKYLKWTTAPIIVEDEDEFHELVRDVFDQVTQRISFAKDWCQKFLDLQKFP
DGQPWKSQEIQHLLKEEFDVEYHPDYLGKVLRELGLSYAKPRPKRPYRPENPEEILDERVGDALDEDETPHNREEGDDEEGWTVDDDVCTDGGTVLGFFD
ASQPQPYDNSRRVWYVDDPHVERPLVKTEESAVGFYALNGESMVRWKETEKKERICEVLEAVREQNPGQRILLVLDKHGSHVCEYTRKRAHQLGIDLIFL
PSGSPHLNPIEQVWKYLKWTTAPIIVEDEDEFHELVRDVFDQVTQRISFAKDWCQKFLDLQKFP
Blast result :
Comments
- inserted into an ISH8-type transposon
- the sequence around the integration site can form a stemloop structure (gatGTCGAGGTCTtt/cAGACCTCGACtcg)
ISHwa7 is 78% aa similar to ISHma2.
- the sequence around the integration site can form a stemloop structure (gatGTCGAGGTCTtt/cAGACCTCGACtcg)
ISHwa7 is 78% aa similar to ISHma2.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968