ISHwa7

  • Family IS630
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1142 bp

Ends


IR Length : 15/19

IRL : ATGAGTGAGAAAACCTTTGTTGGTCACGTTCGATTACAGAGCAATGACTG
IRR : ATGATCAAGGAAACTTTTGCAGATCGAGGAACTTCTGACACCAGTCTTTC

Insertion site


Left flankDirect repeatRight flankDR Length
AGGAAGATGTCGAGGTCTTTTACAGACCTCGACTCGGTAATC2

DNA sequence

ATGAGTGAGAAAACCTTTGTTGGTCACGTTCGATTACAGAGCAATGACTGGAGGGCGTCGAAAAGAGATTACGCATCATCTCTCAGAAAAGAAAATCGAT
GAACTCCTTCGTGAAGCCACAGATGATCGTCGGAAAGAGCGGCTCGGGTTTCTGAAGAACCTCTATTACGGCGATTTGATTGCGGAAGCTGCCGACCGGG
AAGGACGGTCGGCAGCGACCGGGAGGCGGTGGGCGGACGCCTGGAACGAAGGTGGGCTTGAGGGACTGATGCCGAGTTTCGGGGGCGGTCGGCCCCCGAA
ACTCGACGAAGACGAACAAGAAGAGCTGTTAGAGATGCTTCGAGACGGTCAACCGTGGAAATCACAGGAGATTCAGCATCTCCTCAAAGAGGAGTTCGAT
GTCGAATATCATCCGGATTACCTTGGGAAAGTTCTCCGTGAACTGGGCTTATCCTACGCAAAACCCCGTCCGAAGCGTCCATATCGACCGGAGAATCCCG
AGGAAATACTCGACGAGCGCGTCGGCGACGCGCTCGACGAGGATGAGACCCCTCACAACAGAGAGGAAGGAGACGACGAAGAAGGGTGGACTGTTGACGA
CGATGTTTGTACAGATGGTGGGACTGTTCTCGGGTTTTTCGATGCGTCACAGCCACAGCCGTACGATAATTCCCGCCGGGTCTGGTACGTAGACGATCCA
CACGTGGAACGGCCATTAGTCAAGACAGAAGAGTCGGCGGTTGGATTCTACGCACTGAATGGGGAGAGTATGGTTCGCTGGAAAGAAACCGAGAAGAAAG
AACGGATTTGCGAGGTGTTAGAAGCGGTTCGCGAGCAGAATCCGGGTCAGCGGATTCTGCTCGTCTTGGACAAGCACGGTTCACACGTCTGTGAATACAC
GCGCAAGCGTGCGCATCAACTTGGAATCGATCTCATCTTCCTTCCATCAGGATCACCGCATCTCAACCCAATCGAGCAGGTCTGGAAATACCTCAAGTGG
ACGACGGCTCCAATCATCGTCGAGGACGAAGACGAGTTCCACGAACTCGTCAGGGACGTATTTGATCAAGTGACACAGCGAATTAGTTTTGCGAAAGACT
GGTGTCAGAAGTTCCTCGATCTGCAAAAGTTTCCTTGATCAT
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1095 bp364 aa441138+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MTGGRRKEITHHLSEKKIDELLREATDDRRKERLGFLKNLYYGDLIAEAADREGRSAATGRRWADAWNEGGLEGLMPSFGGGRPPKLDEDEQEELLEMLR
DGQPWKSQEIQHLLKEEFDVEYHPDYLGKVLRELGLSYAKPRPKRPYRPENPEEILDERVGDALDEDETPHNREEGDDEEGWTVDDDVCTDGGTVLGFFD
ASQPQPYDNSRRVWYVDDPHVERPLVKTEESAVGFYALNGESMVRWKETEKKERICEVLEAVREQNPGQRILLVLDKHGSHVCEYTRKRAHQLGIDLIFL
PSGSPHLNPIEQVWKYLKWTTAPIIVEDEDEFHELVRDVFDQVTQRISFAKDWCQKFLDLQKFP

 

Blast result :
Comments
- inserted into an ISH8-type transposon
- the sequence around the integration site can form a stemloop structure (gatGTCGAGGTCTtt/cAGACCTCGACtcg)

ISHwa7 is 78% aa similar to ISHma2.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968