ISHwa6
- Family IS1595
- Group ISH4
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
FR746099 | ND | Haloquadratum walsbyi | Haloquadratum walsbyi |
DNA section
IS Length : 1002 bp
Ends
IR Length : 22/25
IRL : CGCTCTTCTGAAGCAGATTGTTGGTCGGGTAAAGCTATCGCCGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAACTTCTCGGATAATC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TATGCAATGGAT | TCAGACAA | TCATCAAAAAGC | 8 |
TGCAATAACAGA | TAATATCAA | AACAGATAAATA | 9 |
TCTCGTCACCAA | TACAAGTA | ACTCCGAGTCCG | 8 |
DNA sequence
CGCTCTTCTGAAGCAGATTGTTGGTCGGGTAAAGCTATCGCCGTGAAAGCGTAGCGGGCAAGAGTGACGCGACGCGTCACCTGAACGCAATGTTCCCATT
TGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGAGAGGGCCTCTGTTGCCCGCGCTGCCAGTCTGAGTCGGTAATC
AAACACGGCAGCTATCGAGAGTATCAACGGTACCTGTGTAAGGATTGCGACCGCACGTTCAACGACAAAACCGGCACGATTTTTGCGCACGCGAAGATCG
GCCTCGATAAGCTGTTGTTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTTTCGTATCGCTCGCTTCA
CCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAACAATCGATCTCGTTGGACCGGTCGAGATCGACGAGTTCTATGTCTCTGCTGGGAAGAAA
GGTCGCGAGCGCGATCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAGGGTGATAAACCGCCAGTGTTCACGCTCGTTGATC
GGGGCAGCGGTCAGCGATACGTCGTCCCAGCGAAATCCGCCGATGAAACGACCGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGAGCATCTA
TACTGACGGATTTCGTGCCTACGATCCACTCGACAATGATGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGCA
CATGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCAAAGGACAAACTGACAGCATATCTCAGGCCGT
TCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACAAGAAGCACTGAAACAGATTATCCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGAG
CG
TGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGAGAGGGCCTCTGTTGCCCGCGCTGCCAGTCTGAGTCGGTAATC
AAACACGGCAGCTATCGAGAGTATCAACGGTACCTGTGTAAGGATTGCGACCGCACGTTCAACGACAAAACCGGCACGATTTTTGCGCACGCGAAGATCG
GCCTCGATAAGCTGTTGTTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTTTCGTATCGCTCGCTTCA
CCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAACAATCGATCTCGTTGGACCGGTCGAGATCGACGAGTTCTATGTCTCTGCTGGGAAGAAA
GGTCGCGAGCGCGATCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAGGGTGATAAACCGCCAGTGTTCACGCTCGTTGATC
GGGGCAGCGGTCAGCGATACGTCGTCCCAGCGAAATCCGCCGATGAAACGACCGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGAGCATCTA
TACTGACGGATTTCGTGCCTACGATCCACTCGACAATGATGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGCA
CATGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCAAAGGACAAACTGACAGCATATCTCAGGCCGT
TCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACAAGAAGCACTGAAACAGATTATCCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGAG
CG
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
885 bp | 294 aa | 90 | 974 | + | No |
Chemistry : DDE
ORF sequence :
MFPFELLSSEASAANLLEQVRWREGLCCPRCQSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSFLRFNTSIRQLDAEIDVSY
RSLHRRVEQFARTLDAPTIDLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEGDKPPVFTLVDRGSGQRYVVPAKSADETTVRLLLDNHEKES
LSIYTDGFRAYDPLDNDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGQEALKQIIREVL
RSLHRRVEQFARTLDAPTIDLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEGDKPPVFTLVDRGSGQRYVVPAKSADETTVRLLLDNHEKES
LSIYTDGFRAYDPLDNDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGQEALKQIIREVL
Blast result :
Comments
ISHwa6 is 97% aa similar to ISNph2.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968