ISHwa6

  • Family IS1595
  • Group ISH4
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1002 bp

Ends


IR Length : 22/25

IRL : CGCTCTTCTGAAGCAGATTGTTGGTCGGGTAAAGCTATCGCCGTGAAAGC
IRR : CGCTCTTGTGAAGTACATTGTTGGTGAGTCAGAGAACTTCTCGGATAATC

Insertion site


Left flankDirect repeatRight flankDR Length
TATGCAATGGATTCAGACAATCATCAAAAAGC8
TGCAATAACAGATAATATCAAAACAGATAAATA9
TCTCGTCACCAATACAAGTAACTCCGAGTCCG8

DNA sequence

CGCTCTTCTGAAGCAGATTGTTGGTCGGGTAAAGCTATCGCCGTGAAAGCGTAGCGGGCAAGAGTGACGCGACGCGTCACCTGAACGCAATGTTCCCATT
TGAATTGCTGAGCTCAGAGGCGAGCGCCGCGAACCTGCTGGAGCAGGTTCGCTGGCGAGAGGGCCTCTGTTGCCCGCGCTGCCAGTCTGAGTCGGTAATC
AAACACGGCAGCTATCGAGAGTATCAACGGTACCTGTGTAAGGATTGCGACCGCACGTTCAACGACAAAACCGGCACGATTTTTGCGCACGCGAAGATCG
GCCTCGATAAGCTGTTGTTCGCGTTCTACTCGTTCCTCCGGTTCAACACGAGTATCCGCCAGTTAGACGCTGAAATTGACGTTTCGTATCGCTCGCTTCA
CCGGCGCGTCGAGCAGTTCGCCAGAACGCTCGACGCGCCAACAATCGATCTCGTTGGACCGGTCGAGATCGACGAGTTCTATGTCTCTGCTGGGAAGAAA
GGTCGCGAGCGCGATCGAGAGTCGCGCTCGCGTGCCCTCTCGAAACGCGGACGAGGAACGTATGAGGGTGATAAACCGCCAGTGTTCACGCTCGTTGATC
GGGGCAGCGGTCAGCGATACGTCGTCCCAGCGAAATCCGCCGATGAAACGACCGTGCGACTCCTTCTCGACAACCACGAGAAGGAGTCGCTGAGCATCTA
TACTGACGGATTTCGTGCCTACGATCCACTCGACAATGATGAGAGCTTCCACCGAGAATCAGTAATTCACGGTGACGGCGAGTACGTTGATGGAGACGCA
CATGTGAACACGTGCGAGAGCCACGCGTCGCTGGCGCGACGGTGGCTCTCGCCGCATCGAGGCGTCTCAAAGGACAAACTGACAGCATATCTCAGGCCGT
TCCAACTTCGGCGACGAATCCTCCGCAAACCGGGACAAGAAGCACTGAAACAGATTATCCGAGAAGTTCTCTGACTCACCAACAATGTACTTCACAAGAG
CG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
885 bp294 aa90974+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MFPFELLSSEASAANLLEQVRWREGLCCPRCQSESVIKHGSYREYQRYLCKDCDRTFNDKTGTIFAHAKIGLDKLLFAFYSFLRFNTSIRQLDAEIDVSY
RSLHRRVEQFARTLDAPTIDLVGPVEIDEFYVSAGKKGRERDRESRSRALSKRGRGTYEGDKPPVFTLVDRGSGQRYVVPAKSADETTVRLLLDNHEKES
LSIYTDGFRAYDPLDNDESFHRESVIHGDGEYVDGDAHVNTCESHASLARRWLSPHRGVSKDKLTAYLRPFQLRRRILRKPGQEALKQIIREVL

 

Blast result :
Comments
ISHwa6 is 97% aa similar to ISNph2.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968