ISHla3
- Family IS5
- Group ISH1
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NC_012028 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 chromosome 2 Halorubrum lacusprofundi ATCC 49239 chromosome 1 |
DNA section
IS Length : 929 bp
Ends
IR Length : 15
IRL : TGCTGTGTTGAATAGCGATCTAATCAGCTGTTATCACGGGGCAGAAGGAC
IRR : TGCTGTGTTGAATAGGTGCTGAGTCACGGTTACAGCGGTTCACACAGTGG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CTTGAAACCT | CTCTCTGA | GCCCTTGATA | 8 |
| CGCGAGAGCG | GTTCAGAC | AGAACGCAAG | 8 |
DNA sequence
TGCTGTGTTGAATAGCGATCTAATCAGCTGTTATCACGGGGCAGAAGGACGAAGCCGAGGAAATCGATTCTGTCCATGGAAGTCGATCTCCTCGACTTCG
TTGAGCAGTGTCGTCGCCTAGTCAAACAAGCGTTGGGAAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGAAACACGTTGTGCTACACTG
TCTTCGGCTCGAAGACGGCCACAGCTACCGAGAAACGCCGAATCGGCTGAAGTATATGGCCGAGATTCGTGACGCACTCGGCTTAGATCCAGACGATCTC
CCAGACTACAGCACGATCTACAAGTCGTTTGATCGGCTGAAAATGTGGGTATGGCGGGCGCTGCTGCGCGTTTCCGCGCAGCAGCACCCGCAGTCCGAAC
ACGCTGCGCTCGACAGCACGTTCTTCGACCGGCGACGTGCGTCATCGTACTTTCGTCAGCGGGCAGGACGAACGATACAGACGCTAAAAGTGACGACATT
GACTGATGTGGAATCGCTGGCTGTTCTTGACGTGCACATTGCAGCTCGGTGGAAGCACGACACGAAGACGGGACCGCAGGTCGTCCGCCGAAACGCGGAC
GACCTGCAGTCGGTTGCCGCCGACAACGGCTTCCAAGACTGGCACACCGAGTACGAGATCGCCGCACACGACATCGATTACCTCGTTCATTATCGCGGCT
CGTCAGCGAACGCAGCCGCGAAAAACGCTCTCAACCGGGCAAAAGGTTACTCTCAGCGGTGGATGGCCGAAACATCGTATTCGACAACGAAGCGCTCGCT
CGGCGACGCCGTGCGAGCGCTGGGCTGGTATCGACAGTTCCGTGAAATCGTCTTGATGTTCGCCATCACCAACATAGAACCACTGTGTGAACCGCTGTAA
CCGTGACTCAGCACCTATTCAACACAGCA
TTGAGCAGTGTCGTCGCCTAGTCAAACAAGCGTTGGGAAAGCACGCGGGCGAGCCCGCCAGCGGCGGGTTCGCCCGCTGGAAACACGTTGTGCTACACTG
TCTTCGGCTCGAAGACGGCCACAGCTACCGAGAAACGCCGAATCGGCTGAAGTATATGGCCGAGATTCGTGACGCACTCGGCTTAGATCCAGACGATCTC
CCAGACTACAGCACGATCTACAAGTCGTTTGATCGGCTGAAAATGTGGGTATGGCGGGCGCTGCTGCGCGTTTCCGCGCAGCAGCACCCGCAGTCCGAAC
ACGCTGCGCTCGACAGCACGTTCTTCGACCGGCGACGTGCGTCATCGTACTTTCGTCAGCGGGCAGGACGAACGATACAGACGCTAAAAGTGACGACATT
GACTGATGTGGAATCGCTGGCTGTTCTTGACGTGCACATTGCAGCTCGGTGGAAGCACGACACGAAGACGGGACCGCAGGTCGTCCGCCGAAACGCGGAC
GACCTGCAGTCGGTTGCCGCCGACAACGGCTTCCAAGACTGGCACACCGAGTACGAGATCGCCGCACACGACATCGATTACCTCGTTCATTATCGCGGCT
CGTCAGCGAACGCAGCCGCGAAAAACGCTCTCAACCGGGCAAAAGGTTACTCTCAGCGGTGGATGGCCGAAACATCGTATTCGACAACGAAGCGCTCGCT
CGGCGACGCCGTGCGAGCGCTGGGCTGGTATCGACAGTTCCGTGAAATCGTCTTGATGTTCGCCATCACCAACATAGAACCACTGTGTGAACCGCTGTAA
CCGTGACTCAGCACCTATTCAACACAGCA
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 825 bp | 274 aa | 76 | 900 | + | No |
Chemistry : DDE
ORF sequence :
MEVDLLDFVEQCRRLVKQALGKHAGEPASGGFARWKHVVLHCLRLEDGHSYRETPNRLKYMAEIRDALGLDPDDLPDYSTIYKSFDRLKMWVWRALLRVS
AQQHPQSEHAALDSTFFDRRRASSYFRQRAGRTIQTLKVTTLTDVESLAVLDVHIAARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAHDI
DYLVHYRGSSANAAAKNALNRAKGYSQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFAITNIEPLCEPL
AQQHPQSEHAALDSTFFDRRRASSYFRQRAGRTIQTLKVTTLTDVESLAVLDVHIAARWKHDTKTGPQVVRRNADDLQSVAADNGFQDWHTEYEIAAHDI
DYLVHYRGSSANAAAKNALNRAKGYSQRWMAETSYSTTKRSLGDAVRALGWYRQFREIVLMFAITNIEPLCEPL
Blast result :
Comments
ISHla3 is 91% aa similar to ISHma9.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.