ISHwa4

  • Family IS701
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
FR746099 ND Haloquadratum walsbyi
Haloquadratum walsbyi
DNA section
IS Length : 1285 bp

Ends


IR Length : 17/18

IRL : CTCGGCTCTGCACGTTTAAGTAGGGGCGTGATGTAGGCAGCATTGAAACC
IRR : CTCGACTCTGCACGTTTATAAACCGCCCTCAGAATGGAGAAAGAGGTGGT

Insertion site


Left flankDirect repeatRight flankDR Length
GGCATGTGTTGATACGTTCGTTATCGTCTCA7
AGTCAGATTGACTCATATGTGCAACCTCAATA8
TTGGAGATTTACTACAGGAATCAACAAATCA7
CAAATGATTATTTATGTTATTCTCCCGGTTT7
CCGGGGCTTTATTAACTCAGAACGCGACAGC7
GCTAAACACATTTACTATGGATAGATTGTGA7
CGGGACTCCATATATTACATATATCTATGCA7
TTCTATGACATCTCCCGTAGTTAACCTCCCC7
TGGAATGGTCACTTCACTGTCTACATTGACC7
GTTCAATTCGACCTACGTAGAGAAGTTGGAG7

DNA sequence

CTCGGCTCTGCACGTTTAAGTAGGGGCGTGATGTAGGCAGCATTGAAACCTGATGCTGCCGATTACGGATTTCCTCTCGTGCACCGACGTGCTGGATGAA
TTCGACTCGCTATCATATCATCAAACGACTCACGCCAAAACGTACGTGACAGGTCTTGCTGCGGGCCGCAGCAAGACTGTAACCGGAATTGCACGAGAGG
TCCTTCCTGCCGGAAGTGACCGAGCACTCAACAAGTTCATCACCGAATACGATTGGGATGAGGATCAGCTCAACCACGAGCGGTTAGAGGAACTGCAAAA
ACACGGAGAGACACGCTGGTCACAAAACGGCTATATCGTTATTGACGATTCAGTCATCCAGCGAACCGGGAAGTCCCTTCCCGGTGCTGGAGAGTTCTAC
GATCACTCTGAGGGTGAGCCTGTTTGGGGACAGAACCTCGTCTACGCGTTCTATACCGATGATAAAACGTCCTATCCACTTGCTTTTCGCCAGTACGAGA
AGGCCGACGACGAGGACGAGGAAGACGAACAGGAGACAAAATACGACCTCGCACGAGAGATAATCACGGAATTAGAAGAAGAGGTAGGTGTGCCTGCGGG
CACCTACCTCTTCGATGCATGGTTTGCTCATGACTCCGGTCTGATCGAACACGTCGAATCACACGGCAAGGACTGGATTGGACCACTACGGGGCAACCGA
CAGGTGACCTACGCGAACAAAGAGAGACGCGTCGATGCGCTCGAAGAGTGCATCGACAAGGAAGAGCGAGAAGTTGACGGTGAAACGTACAAAATTTGGA
CTAAGACAGTCCCTGTCTCGAAATTAGGTGAAGTTCGGCTGGTAATCACAGAGAAGGTTACCGATGAGGACAAAGAGAATCCAGTAAAGTATCTTGCGAC
GAGCAAGATTGACGCGCCTTCGGCACACATTATTCGGAGCTATTCGTACAGATGGCGAGTAGAGACATTCTTCGAGGACTCGAAAGAGGATCTTGGCTTA
GGAGACTGCGAGGTTCGTGATTCTGACGGTGCCAGTCGTCACTGGCACCTTCAGATGCTGGCCTACAGCCTTCTTCGGCTTGGTCCGGAATCGAGCGCCT
CGGAGCGACTTGTCTCGAAAGCCTCGTCGCTCCGATCACAACTCGAACACGGTCTCAAGGAGACGATCTACAACATGTTTTCCTGGGTGCGCGATCAACC
AGACCGCGATCTCGATGGACTGATGGAAGATATTGACCACCTCTTTCTCCATTCTGAGGGCGGTTTATAAACGTGCAGAGTCGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1218 bp405 aa531270+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MLPITDFLSCTDVLDEFDSLSYHQTTHAKTYVTGLAAGRSKTVTGIAREVLPAGSDRALNKFITEYDWDEDQLNHERLEELQKHGETRWSQNGYIVIDDS
VIQRTGKSLPGAGEFYDHSEGEPVWGQNLVYAFYTDDKTSYPLAFRQYEKADDEDEEDEQETKYDLAREIITELEEEVGVPAGTYLFDAWFAHDSGLIEH
VESHGKDWIGPLRGNRQVTYANKERRVDALEECIDKEEREVDGETYKIWTKTVPVSKLGEVRLVITEKVTDEDKENPVKYLATSKIDAPSAHIIRSYSYR
WRVETFFEDSKEDLGLGDCEVRDSDGASRHWHLQMLAYSLLRLGPESSASERLVSKASSLRSQLEHGLKETIYNMFSWVRDQPDRDLDGLMEDIDHLFLH
SEGGL

 

Blast result :
Comments
ISHwa4 is 47% aa similar to ISNpu7.
References
1] Dyall-Smith,M.L., Pfeiffer,F., Klee,K., Palm,P., Gross,K., Schuster,S.C., Rampp, M., and Oesterhelt,D. (2011) PLoS One 6: e20968