ISHma13

  • Family IS5
  • Group ISH1
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_006397 ND Haloarcula marismortui
Haloarcula marismortui ATCC 43049
DNA section
IS Length : 1193 bp

Ends


IR Length : 16/17

IRL : GGCTCTGTTGAAACCCTCAGGGAGTTACATATTCGTCCTGTAATTCCACG
IRR : GGCTCTGTTGAAATCCTATTATTCAGATATATTCATACACGAAACAGTCG

Insertion site


Left flankDirect repeatRight flankDR Length
TCAGTAAACTATCCCACCCTATTCGCTT8

DNA sequence

GGCTCTGTTGAAACCCTCAGGGAGTTACATATTCGTCCTGTAATTCCACGAGATGAAGGTCCTCCCGAAGTCGCAGATTCTCCGGTTTACTGAGAAGGCA
ATCCATCTGGCACGGCGAGCGGTCTCTCGATACTCCTCGAAATTCTCCAACCATCGCTACACACTTCCCCAGCACGTTGTTTTACTGTGTCTCAAAGTCC
GGAAGAACACGACCTACCGTGGCCTGCTTGACGAATTAATCGAGATGCCACGCATTCGTCACGCTCTCGGGCTATCCGAACTTCCTACGCCATCAACGCT
TTGTAAGGCGTTCAGTCGGCTTGATATGGCAGTGTGGCGTGTTATATTGACTCTCTCAGCCACGCTACTTCCGACGAGCGGCATTGTTGGAGTTGATGCA
TCAGGATTTGACCGCAGTCACGCCTCGAAACACTACACGAAACGCGCTGAACTCACGATTCAGCAGCTCAAAGTGACACTGCTGGCCGATGCGAAGGTGA
ACGCAATCCTTGATCTCCACGTGACAACGACACGAAAACACGATAGCCAGATTGCACCGTCGTTGATCAAACGCAATCCCGATGATATTGATATTCTGCT
TGGTGACAAAGGGTACGACGACCAGAAGATCAGACGACTTGCCCGTTACCACGAGGTTCGACCACTGATCAAGCATCGTGAGTCCACATCGCTCCACAAG
GCATGGAACGCGCGCTTAGACGCCAATCTCTACGGTCAGCGGAGTCAATCTGAGACTGTGAACTCCACGCTCAAGCGGAAGTACGGTGCGTTCGTCCGAT
CACGACGCTGGTGGAAACAGTTCCGTGAACTCACTATCGCCTGTCTCGTTCATAATGTAGACCGGTCACTCTGAGTGGTCAAGACAGGTCAGCCCATGAA
TGATACTAATATGCCGATAACTGCACAAAGTGCCCCTAATCCCTGAAAGAACATCTTCCCACTATCGGACATAGAATCTTCATCAACCGCCCCGAAGAAC
CAAAATCGAATGGTTGCTTCGGGCCAAATTGCGCCGGTGATACCAACTATAAACAGCAAGAACCCTGCGATTGCACTCATGTTGTTGTCTGCCCTCAAAC
TAATAATAAGCCTTGTGACGGCTAATTTGCAGGCTTCAGCGAGCGACTGTTTCGTGTATGAATATATCTGAATAATAGGATTTCAACAGAGCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
822 bp273 aa53874+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MKVLPKSQILRFTEKAIHLARRAVSRYSSKFSNHRYTLPQHVVLLCLKVRKNTTYRGLLDELIEMPRIRHALGLSELPTPSTLCKAFSRLDMAVWRVILT
LSATLLPTSGIVGVDASGFDRSHASKHYTKRAELTIQQLKVTLLADAKVNAILDLHVTTTRKHDSQIAPSLIKRNPDDIDILLGDKGYDDQKIRRLARYH
EVRPLIKHRESTSLHKAWNARLDANLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELTIACLVHNVDRSL

 

Blast result :
Comments
ISHma13 is 96% aa similar to ISHla2.
References
1] ISfinder annotation (2010).

2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234