ISHma13
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006397 | ND | Haloarcula marismortui | Haloarcula marismortui ATCC 43049 |
DNA section
IS Length : 1193 bp
Ends
IR Length : 16/17
IRL : GGCTCTGTTGAAACCCTCAGGGAGTTACATATTCGTCCTGTAATTCCACG
IRR : GGCTCTGTTGAAATCCTATTATTCAGATATATTCATACACGAAACAGTCG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCAGTAAACT | ATCCCACC | CTATTCGCTT | 8 |
DNA sequence
GGCTCTGTTGAAACCCTCAGGGAGTTACATATTCGTCCTGTAATTCCACGAGATGAAGGTCCTCCCGAAGTCGCAGATTCTCCGGTTTACTGAGAAGGCA
ATCCATCTGGCACGGCGAGCGGTCTCTCGATACTCCTCGAAATTCTCCAACCATCGCTACACACTTCCCCAGCACGTTGTTTTACTGTGTCTCAAAGTCC
GGAAGAACACGACCTACCGTGGCCTGCTTGACGAATTAATCGAGATGCCACGCATTCGTCACGCTCTCGGGCTATCCGAACTTCCTACGCCATCAACGCT
TTGTAAGGCGTTCAGTCGGCTTGATATGGCAGTGTGGCGTGTTATATTGACTCTCTCAGCCACGCTACTTCCGACGAGCGGCATTGTTGGAGTTGATGCA
TCAGGATTTGACCGCAGTCACGCCTCGAAACACTACACGAAACGCGCTGAACTCACGATTCAGCAGCTCAAAGTGACACTGCTGGCCGATGCGAAGGTGA
ACGCAATCCTTGATCTCCACGTGACAACGACACGAAAACACGATAGCCAGATTGCACCGTCGTTGATCAAACGCAATCCCGATGATATTGATATTCTGCT
TGGTGACAAAGGGTACGACGACCAGAAGATCAGACGACTTGCCCGTTACCACGAGGTTCGACCACTGATCAAGCATCGTGAGTCCACATCGCTCCACAAG
GCATGGAACGCGCGCTTAGACGCCAATCTCTACGGTCAGCGGAGTCAATCTGAGACTGTGAACTCCACGCTCAAGCGGAAGTACGGTGCGTTCGTCCGAT
CACGACGCTGGTGGAAACAGTTCCGTGAACTCACTATCGCCTGTCTCGTTCATAATGTAGACCGGTCACTCTGAGTGGTCAAGACAGGTCAGCCCATGAA
TGATACTAATATGCCGATAACTGCACAAAGTGCCCCTAATCCCTGAAAGAACATCTTCCCACTATCGGACATAGAATCTTCATCAACCGCCCCGAAGAAC
CAAAATCGAATGGTTGCTTCGGGCCAAATTGCGCCGGTGATACCAACTATAAACAGCAAGAACCCTGCGATTGCACTCATGTTGTTGTCTGCCCTCAAAC
TAATAATAAGCCTTGTGACGGCTAATTTGCAGGCTTCAGCGAGCGACTGTTTCGTGTATGAATATATCTGAATAATAGGATTTCAACAGAGCC
ATCCATCTGGCACGGCGAGCGGTCTCTCGATACTCCTCGAAATTCTCCAACCATCGCTACACACTTCCCCAGCACGTTGTTTTACTGTGTCTCAAAGTCC
GGAAGAACACGACCTACCGTGGCCTGCTTGACGAATTAATCGAGATGCCACGCATTCGTCACGCTCTCGGGCTATCCGAACTTCCTACGCCATCAACGCT
TTGTAAGGCGTTCAGTCGGCTTGATATGGCAGTGTGGCGTGTTATATTGACTCTCTCAGCCACGCTACTTCCGACGAGCGGCATTGTTGGAGTTGATGCA
TCAGGATTTGACCGCAGTCACGCCTCGAAACACTACACGAAACGCGCTGAACTCACGATTCAGCAGCTCAAAGTGACACTGCTGGCCGATGCGAAGGTGA
ACGCAATCCTTGATCTCCACGTGACAACGACACGAAAACACGATAGCCAGATTGCACCGTCGTTGATCAAACGCAATCCCGATGATATTGATATTCTGCT
TGGTGACAAAGGGTACGACGACCAGAAGATCAGACGACTTGCCCGTTACCACGAGGTTCGACCACTGATCAAGCATCGTGAGTCCACATCGCTCCACAAG
GCATGGAACGCGCGCTTAGACGCCAATCTCTACGGTCAGCGGAGTCAATCTGAGACTGTGAACTCCACGCTCAAGCGGAAGTACGGTGCGTTCGTCCGAT
CACGACGCTGGTGGAAACAGTTCCGTGAACTCACTATCGCCTGTCTCGTTCATAATGTAGACCGGTCACTCTGAGTGGTCAAGACAGGTCAGCCCATGAA
TGATACTAATATGCCGATAACTGCACAAAGTGCCCCTAATCCCTGAAAGAACATCTTCCCACTATCGGACATAGAATCTTCATCAACCGCCCCGAAGAAC
CAAAATCGAATGGTTGCTTCGGGCCAAATTGCGCCGGTGATACCAACTATAAACAGCAAGAACCCTGCGATTGCACTCATGTTGTTGTCTGCCCTCAAAC
TAATAATAAGCCTTGTGACGGCTAATTTGCAGGCTTCAGCGAGCGACTGTTTCGTGTATGAATATATCTGAATAATAGGATTTCAACAGAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MKVLPKSQILRFTEKAIHLARRAVSRYSSKFSNHRYTLPQHVVLLCLKVRKNTTYRGLLDELIEMPRIRHALGLSELPTPSTLCKAFSRLDMAVWRVILT
LSATLLPTSGIVGVDASGFDRSHASKHYTKRAELTIQQLKVTLLADAKVNAILDLHVTTTRKHDSQIAPSLIKRNPDDIDILLGDKGYDDQKIRRLARYH
EVRPLIKHRESTSLHKAWNARLDANLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELTIACLVHNVDRSL
LSATLLPTSGIVGVDASGFDRSHASKHYTKRAELTIQQLKVTLLADAKVNAILDLHVTTTRKHDSQIAPSLIKRNPDDIDILLGDKGYDDQKIRRLARYH
EVRPLIKHRESTSLHKAWNARLDANLYGQRSQSETVNSTLKRKYGAFVRSRRWWKQFRELTIACLVHNVDRSL
Blast result :
Comments
ISHma13 is 96% aa similar to ISHla2.
References
1] ISfinder annotation (2010).
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234
2] Baliga,N.S., Bonneau,R., Facciotti,M.T., Pan,M., Glusman,G., Deutsch,E.W., Shannon,P., Chiu,Y., Weng,R.S., Gan,R.R., Hung,P., Date,S.V., Marcotte,E., Hood,L. and Ng,W.V. (2004) Genome Res. 14 (11), 2221-2234