ISHla2
- Family IS5
- Group ISH1
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012030 | ND | Halorubrum lacusprofundi | Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01 Halorubrum lacusprofundi ATCC 49239 chromosome 2 |
DNA section
IS Length : 1193 bp
Ends
IR Length : 20/23
IRL : GGCTCTGTTGAAATCCTTGAAGATTTACATGTTTGTCGTGTAATTCCATG
IRR : GGCTTTGTTGAAATCCTATTGAACTAACACTTTTAGCAGTGACACAGCTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATACGATAA | TAT | GTACCTTAAA | 3 |
ACGACTGAAC | GAATATGTTT | 0 | |
TGATAAATCG | TATGTACCTT | 0 |
DNA sequence
GGCTCTGTTGAAATCCTTGAAGATTTACATGTTTGTCGTGTAATTCCATGAGATGAAGACCCTCCCGAAGTCGCAGATTCTCCGTTTTACTGAGAAGGCG
ATCCACCTAGCACGCCGAGCAGTCTCTCGATACTCCTCGAAGTTTTCTAAACACCGCTATACACTCCCGCAGCACGTTGTTCTACTGTGTCTCAAAGTTC
GGAAGAACACGACCTATCGTGGTCTGCTTGACGAACTGATCGAGATGCCACGCATTCGTCAAGCTCTTGGATTAACTGAACTACCTACGCCATCAACGCT
CTGTAAGGCGTTCAATCGGCTTGATATGGCTGTATGGCGTGTTGTATTGACTCTCTCAGCGACGCTACTTCCGACGAGTGGAATCGTTGGAGTTGATGCG
TCAGGGTTCGACCGCAGTCACGCCTCAAAACATTACACGAAACGGGCTGAACTCACGATTCAGCAGCTCAAAGTGACGCTGTTGGTAGATACGAAAGTGA
ACGCAATTCTCGATCTGCACGTGACGACGACACGAAAACACGATAGTCAGATCGCTCCATCGTTGGTCAAACGCAACCCCGAGACCATCGACATTCTGCT
CGGTGACAAAGGCTACGACGACCAGAAGATCAGACGACTTGCCCGTCACCACGAGGTTCGGCCACTGATTAAGCATCGTGAGTTCACATCTCTCCACAAG
GCATGGAACGCACGCTTAGACGCTGATCTCTACGGACAGAGAAGTCAATCAGAGACGGTCAACTCAACGCTCAAACGAAAGTACGGTGCCTTCGTTCGCT
CCCGACAATGGTGGAAACAGTTCCGTGAACTCGTTCTTAGATGTCTTGTCCACAATATCGACCGAGCCCTCTAAGATCAGTACAGAGCAAAGGTCCCACA
ATCGTTATCTCATCAGGCATTAACCCATTATGTATGTCAAAAGTAATTTGGACACTTGCTGTAGCATATGGTCTCGTTGGACTCGGTCTATTCTACAGTT
TAGCAGTAGATTCTAGTGAGCTATTTTTAGCCATGACTACCGTCATCTATGTTCTAATGCTTCCATTAGCATATCTAGTCTATAAAAAACGGGTTGTAAG
TGAGTAATCGCTCAAGAAACAGCCAATTCCCACATCTACGTAGCAGCTGTGTCACTGCTAAAAGTGTTAGTTCAATAGGATTTCAACAAAGCC
ATCCACCTAGCACGCCGAGCAGTCTCTCGATACTCCTCGAAGTTTTCTAAACACCGCTATACACTCCCGCAGCACGTTGTTCTACTGTGTCTCAAAGTTC
GGAAGAACACGACCTATCGTGGTCTGCTTGACGAACTGATCGAGATGCCACGCATTCGTCAAGCTCTTGGATTAACTGAACTACCTACGCCATCAACGCT
CTGTAAGGCGTTCAATCGGCTTGATATGGCTGTATGGCGTGTTGTATTGACTCTCTCAGCGACGCTACTTCCGACGAGTGGAATCGTTGGAGTTGATGCG
TCAGGGTTCGACCGCAGTCACGCCTCAAAACATTACACGAAACGGGCTGAACTCACGATTCAGCAGCTCAAAGTGACGCTGTTGGTAGATACGAAAGTGA
ACGCAATTCTCGATCTGCACGTGACGACGACACGAAAACACGATAGTCAGATCGCTCCATCGTTGGTCAAACGCAACCCCGAGACCATCGACATTCTGCT
CGGTGACAAAGGCTACGACGACCAGAAGATCAGACGACTTGCCCGTCACCACGAGGTTCGGCCACTGATTAAGCATCGTGAGTTCACATCTCTCCACAAG
GCATGGAACGCACGCTTAGACGCTGATCTCTACGGACAGAGAAGTCAATCAGAGACGGTCAACTCAACGCTCAAACGAAAGTACGGTGCCTTCGTTCGCT
CCCGACAATGGTGGAAACAGTTCCGTGAACTCGTTCTTAGATGTCTTGTCCACAATATCGACCGAGCCCTCTAAGATCAGTACAGAGCAAAGGTCCCACA
ATCGTTATCTCATCAGGCATTAACCCATTATGTATGTCAAAAGTAATTTGGACACTTGCTGTAGCATATGGTCTCGTTGGACTCGGTCTATTCTACAGTT
TAGCAGTAGATTCTAGTGAGCTATTTTTAGCCATGACTACCGTCATCTATGTTCTAATGCTTCCATTAGCATATCTAGTCTATAAAAAACGGGTTGTAAG
TGAGTAATCGCTCAAGAAACAGCCAATTCCCACATCTACGTAGCAGCTGTGTCACTGCTAAAAGTGTTAGTTCAATAGGATTTCAACAAAGCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
822 bp | 273 aa | 53 | 874 | + | No |
Chemistry : DDE
ORF sequence :
MKTLPKSQILRFTEKAIHLARRAVSRYSSKFSKHRYTLPQHVVLLCLKVRKNTTYRGLLDELIEMPRIRQALGLTELPTPSTLCKAFNRLDMAVWRVVLT
LSATLLPTSGIVGVDASGFDRSHASKHYTKRAELTIQQLKVTLLVDTKVNAILDLHVTTTRKHDSQIAPSLVKRNPETIDILLGDKGYDDQKIRRLARHH
EVRPLIKHREFTSLHKAWNARLDADLYGQRSQSETVNSTLKRKYGAFVRSRQWWKQFRELVLRCLVHNIDRAL
LSATLLPTSGIVGVDASGFDRSHASKHYTKRAELTIQQLKVTLLVDTKVNAILDLHVTTTRKHDSQIAPSLVKRNPETIDILLGDKGYDDQKIRRLARHH
EVRPLIKHREFTSLHKAWNARLDADLYGQRSQSETVNSTLKRKYGAFVRSRQWWKQFRELVLRCLVHNIDRAL
Blast result :
Comments
ISHla2 is 62% aa similar to ISH9.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.