ISHla1

  • Family ISH3
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012028 ND Halorubrum lacusprofundi
Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01
Halorubrum lacusprofundi ATCC 49239 chromosome 2
DNA section
IS Length : 1399 bp

Ends


IR Length : 15/16

IRL : CAGTACTTCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTG
IRR : CAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGCGGCCTGAGTTCT

Insertion site


Left flankDirect repeatRight flankDR Length
TCTCAAGTGTATCATTCCAG0
CAGACAAACTATGTTGATCG0
GAACGATGCTAACCTGACCA0

DNA sequence

CAGTACTTCACAAAGCCGCTTAGTTAGAACGTCTGCTTGCTGAAGGTGTGTCTAAAACCAAACAAGCAGACGGTGAGATCCACGAGGACCAGCTTCTTAA
CTTTCTCGTCAACCGCCTTGACGAGGAAGTTTCGCTCTCGTTAGCCAATAACGCTGAAATCACTGCTGAAGACATCTATGAGGTCCTCGTCGGCGCTTGC
GCCGACGGGACCTCTGTCTCTACGCTCTGTGCGTCGAGCCAGAACTCACCCGCTGGGAACACGGTCCTCTACCATCTTCGGACGAAGTTCGAGCCGGAAC
GGCTCGAACGAGTCGCTAACACGCTCCTGCGAAAGGATCTCGATGAATTGCTCCCCGAACAGGTGGAGGTCTGCGCAGACCTCCACCTGCGGCCCTACTA
CGGTGACGAAGACGACACAGACGGCCTCTATCACTCGGTAGCGAAGCGTGGAACCACTGCGTTCCACGCCTATGCCACACTCTACGCGCGTGTGAAGAAC
AAACGCTACACGCTGGCGGTACGCCGTCTCAAAGACGGCGATACCGCAAGTAGTGTCCTCGCTGAGTTCTTCGGTGTCCTCGACGGCCTTGACGCCGGGG
TCAAGGCCGTCTACCTTGATCGCGGATTCTACGACAGTAAGTGTCTCACGCTGCTTCAGGCGCACAATTACGCGTACGTGATCCCGATCATCCGGTGGGG
TGAGGCGATTCAGCAAGAGCTCTCGGAAGGATGGAGTCGCGTCATTCAGCATGATCTGACGGGGAAACTCGACGGTCACAGCTGGACCGTCGATTTTCCC
GTCTACATCGACTGTACGTACCTAAATGGGAAGTATGACGAGAACGGTGTGGCGCGTCACGGCTACGCCGCTGACGCGCCGTTCATCGACTCACCACGGG
ACGCTCGATACCACTACTCGAAACGCTTCGGTATCGAGTCAAGCTATCGCTTGTTTGAGCAAGCGATAGCGACAACGACAACACGAGATCCAACGGTACG
GCTGCTGTACGTGGTGGTGAGTCTCCTCTTACAGAACGTCTGGCGGTACCTTCACTACGAGTATGTGGCGACGCCCCGCCGAGGCGGGCGTCGCCTCTGG
TGGTGGCCGTACAAGGAGTTCGTCAATATGATTCGACGAGCTGCGTGGACGGCCCTCGCGGTGCGTCGGGCCGTCCCCGCGAATCGGCCACCTGACGACC
GATTCCACCGCTAACCACCGACCGAGCAAGCCAGCGGAGTGAGTGGCGACGCTGTCGCGTCGGCGGCTGACCGCCGCCGACAGCGACAGCTCTCCGTCGA
TCCGTCCGTAATTCTCTCGTCGAGACCGTCAGTACAACCGCTTCGACACAGAACTCAGGCCGCAGAAACAGCTAGCCGAGGATGCTTTGTGAGGTACTG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1167 bp388 aa481214+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

VSKTKQADGEIHEDQLLNFLVNRLDEEVSLSLANNAEITAEDIYEVLVGACADGTSVSTLCASSQNSPAGNTVLYHLRTKFEPERLERVANTLLRKDLDE
LLPEQVEVCADLHLRPYYGDEDDTDGLYHSVAKRGTTAFHAYATLYARVKNKRYTLAVRRLKDGDTASSVLAEFFGVLDGLDAGVKAVYLDRGFYDSKCL
TLLQAHNYAYVIPIIRWGEAIQQELSEGWSRVIQHDLTGKLDGHSWTVDFPVYIDCTYLNGKYDENGVARHGYAADAPFIDSPRDARYHYSKRFGIESSY
RLFEQAIATTTTRDPTVRLLYVVVSLLLQNVWRYLHYEYVATPRRGGRRLWWWPYKEFVNMIRRAAWTALAVRRAVPANRPPDDRFHR

 

Blast result :
Comments
ISHla1 is 95% aa similar to ISH3C.
References
1] ISfinder annotation (2010).

2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Bruce,D., Goodwin,L., Pitluck,S., Sims,D., Brettin,T., Detter,J.C., Han,C., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ivanova,N., Anderson,I., DasSarma,S., Cavicchioli,R. and Richardson,P. (2009) Direct submission GenBank.