ISTel2
- Family IS200/IS605
- Group IS605
Isoform Synonym(s) ISEL3
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_004113 | ND | Thermosynechococcus elongatus | Thermosynechococcus elongatus BP-1 |
DNA section
IS Length : 1675 bp
Ends
Left end : CAATGAAATGGGATACAAGCCCCGTCCTTTTAGGACGGCTTTTTTTGATTTCTCATGTATTCCTTAAGCACCTCTAACGGTGCTCCTCCAACAGATGCCG II struct. : Yes
Right end : ACGACTATAAATGGACGCAGAGGGGGAGTAAGACTACTTCGGTAGCATCACCCAGTGAAGCGTCAAGAATCATCGCACTTTAGGCCGGTGAGTATGTCAA II struct. : Yes
Insertion site
Left flank | LE cleavage site | Right flank | RE cleavage site |
---|---|---|---|
ATCTCACCGCTGCCCC | TGAC | AATGTCTTCAAGAACAAGGG | TCAA |
CGCCCGCCACCCCCAA | TGAC | ACCCCCCTCTTATCTTGCTG | TCAA |
TGATTCTGCGGGTAAT | TGAC | AATCCAATCAATAAAAGCGG | TCAA |
CGGGCGATCGCCTGCT | TGAC | AGAAACAAGTTAGACCGCAA | TCAA |
GGTGAGGACGTGGTTT | TGAC | TATCGCCAGATTCCAACCTT | TCAA |
GGGCACTGCGGAACGT | TGAC | CGTTTCCAGCTTGATCAGCT | TCAA |
GTAGCGATGCCTAAAC | TGAC | ATCTACTACCGCAGTAATGC | TCAA |
GCCTCTGGGAACGCCT | TGAC | AATTATGGTGAAACTCACTA | TCAA |
GGGGTGAACGGGGAAT | TGAC | AAACAGCCCCGTACCAATCA | TCAA |
CTAGGGAGCTTAAAGA | TCAC | ATATTGCGCTTTGTTACAGC | TCAA |
GATTTGCGCTTGCTAT | TGAC | TCTCCCCAAGACGAGCAACT | TCAA |
ATTCCCAGGACCGCCA | TGAC | AAACCTCCCCCTATACCATT | TCAA |
TTGATTGGCACTGCCC | TGAC | AATGAAAGACACAGAAGATC | TCAA |
TGCGCCAAGGAAACTT | TGAC | ACCTACGGTCACATCGAACC | TCAA |
GTGAACATCGCTCCTG | TGAC | CAAGTTTTGCCCCTCTTACT | TCAA |
TTGGAGGCAGTGTTGA | TGAC | TCATCCTAAATTTTATTTCC | TCAA |
DNA sequence
CAATGAAATGGGATACAAGCCCCGTCCTTTTAGGACGGCTTTTTTTGATTTCTCATGTATTCCTTAAGCACCTCTAACGGTGCTCCTCCAACAGATGCCG
CAAAATAACTAGGGCTCCAAAGTGATTCTTCATGGGGTTTTGGTAGTGCAGCTTTTCCATATCGACGACTAGATACGCCTTTAAGCGCATTTACGATCTG
CGAAAGAGAAAGTTTAGGAGGGTACTCGATTAGCGCATGGACATGGTCTTCCTCGCCGTTAAATTCAAGAATCTGGAAATCCATCTTCTTGGCGACTTCT
CGAAACGATTTCTCGATCAGCTCTAATCCCTCAGCGCTAAGGACTGGCCGGCAATACTTAGTCACGCATACCAAATGAATCTTCAGGTCCGTAACACTAT
GTCTCCCTTTACGAAGATGACTTGACATTGCCTGTAGACCAACCTATAATCTAGCTACAGACCAACTATATCACGACCAATGAAAGCTAGATATAGGTAT
CGTTTCTATCCCACAGACCAACAACGACAACGCCTAGCTCAGTTGTTTGGCTGTGTCCGTGTGGTATGGAACGACGCACTGGCAATTTGTAAACAATCTG
ATTCATTGCCAAAAACTAGTGAATTGCAAAAGCTAGTAATTACCCAAGGGAAGAAAACACCAGAGCGGCAATGGTTGTCTGATGTTTCTAATGTCCCGTT
ACAGCAGTCCGTTGCCGATTTAGGAGTTGCCTATAAAAACTTCTTCGATTCAATTAAAGGTCGGCGAAAAGGCAAGAAGATCAACCCTCCTAGATTTAAA
AAGAAGACAGAAAGACAATCCGCCAGATTTACTACCTATGGTTTTTCAATTAAAGGCGAAGAAGTTTATCTAGCGAAGATTGGTAATGTCAGACCAATTT
GGTCAAGAAAGCTTCCTTCTAAACCAAGCTCAGTTACGGTGATTAAAGATGCTGCAAATCGATATTTTCTCAGTTTTGTCGTCGAGATCGACCCAGTTCA
TCAACCTGCAAGTAATCCTTCTATCGGCATTGATTTGGGAATTAAAGCGTTTGCTACTTTAAGTACGGGCGAAAAGATTGATGGCCCTGATTATTCCAAG
TTAGACAAAAAGATCAGGCGAAAACAACGCAAACTGGCCCGTCAAGTTAAAGGAAGCCAACGGCGGGAGAAAACAAGACTGCAAATCGCTAAGCTTCATA
GTCGGATTTCAGACATTCGCAGGGATTTCTTGCATAAAGTGTCTACCCGCGTGGTTATCGAGAACCAAGTGATCACGCTGGAAGACTTGAATGTCTCTGG
AATGGTGAAGAACCGCAAACTCGCTAGAGCAATTAGCTTGCAAGGTTGGCGAGAATTCAGGGTTTTAGTTGAGGCTAAGTGCAACAAACTAAACCGTGAG
TTTATTGTCATTGACCGATGGGAGCCAACCAGTCAGACTTGCTCAAAATGCGGTTTTAAATGGGGCAAAGTCGATCTATCCGTTCGCTCGGTCGTATGTC
TAAATTGTGGTACAGAGCACGATAGAGACGAAAATGCTGCAAGAAACATAGAAAAAGTCGGGATAGGGCATTGCCACGACTATAAATGGACGCAGAGGGG
GAGTAAGACTACTTCGGTAGCATCACCCAGTGAAGCGTCAAGAATCATCGCACTTTAGGCCGGTGAGTATGTCAA
CAAAATAACTAGGGCTCCAAAGTGATTCTTCATGGGGTTTTGGTAGTGCAGCTTTTCCATATCGACGACTAGATACGCCTTTAAGCGCATTTACGATCTG
CGAAAGAGAAAGTTTAGGAGGGTACTCGATTAGCGCATGGACATGGTCTTCCTCGCCGTTAAATTCAAGAATCTGGAAATCCATCTTCTTGGCGACTTCT
CGAAACGATTTCTCGATCAGCTCTAATCCCTCAGCGCTAAGGACTGGCCGGCAATACTTAGTCACGCATACCAAATGAATCTTCAGGTCCGTAACACTAT
GTCTCCCTTTACGAAGATGACTTGACATTGCCTGTAGACCAACCTATAATCTAGCTACAGACCAACTATATCACGACCAATGAAAGCTAGATATAGGTAT
CGTTTCTATCCCACAGACCAACAACGACAACGCCTAGCTCAGTTGTTTGGCTGTGTCCGTGTGGTATGGAACGACGCACTGGCAATTTGTAAACAATCTG
ATTCATTGCCAAAAACTAGTGAATTGCAAAAGCTAGTAATTACCCAAGGGAAGAAAACACCAGAGCGGCAATGGTTGTCTGATGTTTCTAATGTCCCGTT
ACAGCAGTCCGTTGCCGATTTAGGAGTTGCCTATAAAAACTTCTTCGATTCAATTAAAGGTCGGCGAAAAGGCAAGAAGATCAACCCTCCTAGATTTAAA
AAGAAGACAGAAAGACAATCCGCCAGATTTACTACCTATGGTTTTTCAATTAAAGGCGAAGAAGTTTATCTAGCGAAGATTGGTAATGTCAGACCAATTT
GGTCAAGAAAGCTTCCTTCTAAACCAAGCTCAGTTACGGTGATTAAAGATGCTGCAAATCGATATTTTCTCAGTTTTGTCGTCGAGATCGACCCAGTTCA
TCAACCTGCAAGTAATCCTTCTATCGGCATTGATTTGGGAATTAAAGCGTTTGCTACTTTAAGTACGGGCGAAAAGATTGATGGCCCTGATTATTCCAAG
TTAGACAAAAAGATCAGGCGAAAACAACGCAAACTGGCCCGTCAAGTTAAAGGAAGCCAACGGCGGGAGAAAACAAGACTGCAAATCGCTAAGCTTCATA
GTCGGATTTCAGACATTCGCAGGGATTTCTTGCATAAAGTGTCTACCCGCGTGGTTATCGAGAACCAAGTGATCACGCTGGAAGACTTGAATGTCTCTGG
AATGGTGAAGAACCGCAAACTCGCTAGAGCAATTAGCTTGCAAGGTTGGCGAGAATTCAGGGTTTTAGTTGAGGCTAAGTGCAACAAACTAAACCGTGAG
TTTATTGTCATTGACCGATGGGAGCCAACCAGTCAGACTTGCTCAAAATGCGGTTTTAAATGGGGCAAAGTCGATCTATCCGTTCGCTCGGTCGTATGTC
TAAATTGTGGTACAGAGCACGATAGAGACGAAAATGCTGCAAGAAACATAGAAAAAGTCGGGATAGGGCATTGCCACGACTATAAATGGACGCAGAGGGG
GAGTAAGACTACTTCGGTAGCATCACCCAGTGAAGCGTCAAGAATCATCGCACTTTAGGCCGGTGAGTATGTCAA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
399 bp | 132 aa | 428 | 30 | - | No |
Chemistry : Y1
ORF sequence :
MSSHLRKGRHSVTDLKIHLVCVTKYCRPVLSAEGLELIEKSFREVAKKMDFQILEFNGEEDHVHALIEYPPKLSLSQIVNALKGVSSRRYGKAALPKPHE
ESLWSPSYFAASVGGAPLEVLKEYMRNQKKPS
ESLWSPSYFAASVGGAPLEVLKEYMRNQKKPS
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1179 bp | 392 aa | 480 | 1658 | + | No |
AG : TnpB
ORF sequence :
MKARYRYRFYPTDQQRQRLAQLFGCVRVVWNDALAICKQSDSLPKTSELQKLVITQGKKTPERQWLSDVSNVPLQQSVADLGVAYKNFFDSIKGRRKGKK
INPPRFKKKTERQSARFTTYGFSIKGEEVYLAKIGNVRPIWSRKLPSKPSSVTVIKDAANRYFLSFVVEIDPVHQPASNPSIGIDLGIKAFATLSTGEKI
DGPDYSKLDKKIRRKQRKLARQVKGSQRREKTRLQIAKLHSRISDIRRDFLHKVSTRVVIENQVITLEDLNVSGMVKNRKLARAISLQGWREFRVLVEAK
CNKLNREFIVIDRWEPTSQTCSKCGFKWGKVDLSVRSVVCLNCGTEHDRDENAARNIEKVGIGHCHDYKWTQRGSKTTSVASPSEASRIIAL
INPPRFKKKTERQSARFTTYGFSIKGEEVYLAKIGNVRPIWSRKLPSKPSSVTVIKDAANRYFLSFVVEIDPVHQPASNPSIGIDLGIKAFATLSTGEKI
DGPDYSKLDKKIRRKQRKLARQVKGSQRREKTRLQIAKLHSRISDIRRDFLHKVSTRVVIENQVITLEDLNVSGMVKNRKLARAISLQGWREFRVLVEAK
CNKLNREFIVIDRWEPTSQTCSKCGFKWGKVDLSVRSVVCLNCGTEHDRDENAARNIEKVGIGHCHDYKWTQRGSKTTSVASPSEASRIIAL
Blast result :
Comments
ISTel2 is 67% aa(ORF1 : the transposase) similar to IS606 and 59% (ORFB) to ISPa18. There are 6 complete copies, 7 copies with internal deletions and 3 MITEs.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.