ISTel2

  • Family IS200/IS605
  • Group IS605
MGE type ISRelated element(s) :
Isoform Synonym(s) ISEL3
Accession numberTranspositionOriginHost
NC_004113 ND Thermosynechococcus elongatus
Thermosynechococcus elongatus BP-1
DNA section
IS Length : 1675 bp

Ends


Left end : CAATGAAATGGGATACAAGCCCCGTCCTTTTAGGACGGCTTTTTTTGATTTCTCATGTATTCCTTAAGCACCTCTAACGGTGCTCCTCCAACAGATGCCG II struct. : Yes
Right end : ACGACTATAAATGGACGCAGAGGGGGAGTAAGACTACTTCGGTAGCATCACCCAGTGAAGCGTCAAGAATCATCGCACTTTAGGCCGGTGAGTATGTCAA II struct. : Yes

Insertion site


Left flankLE cleavage siteRight flankRE cleavage site
ATCTCACCGCTGCCCCTGACAATGTCTTCAAGAACAAGGGTCAA
CGCCCGCCACCCCCAATGACACCCCCCTCTTATCTTGCTGTCAA
TGATTCTGCGGGTAATTGACAATCCAATCAATAAAAGCGGTCAA
CGGGCGATCGCCTGCTTGACAGAAACAAGTTAGACCGCAATCAA
GGTGAGGACGTGGTTTTGACTATCGCCAGATTCCAACCTTTCAA
GGGCACTGCGGAACGTTGACCGTTTCCAGCTTGATCAGCTTCAA
GTAGCGATGCCTAAACTGACATCTACTACCGCAGTAATGCTCAA
GCCTCTGGGAACGCCTTGACAATTATGGTGAAACTCACTATCAA
GGGGTGAACGGGGAATTGACAAACAGCCCCGTACCAATCATCAA
CTAGGGAGCTTAAAGATCACATATTGCGCTTTGTTACAGCTCAA
GATTTGCGCTTGCTATTGACTCTCCCCAAGACGAGCAACTTCAA
ATTCCCAGGACCGCCATGACAAACCTCCCCCTATACCATTTCAA
TTGATTGGCACTGCCCTGACAATGAAAGACACAGAAGATCTCAA
TGCGCCAAGGAAACTTTGACACCTACGGTCACATCGAACCTCAA
GTGAACATCGCTCCTGTGACCAAGTTTTGCCCCTCTTACTTCAA
TTGGAGGCAGTGTTGATGACTCATCCTAAATTTTATTTCCTCAA

DNA sequence

CAATGAAATGGGATACAAGCCCCGTCCTTTTAGGACGGCTTTTTTTGATTTCTCATGTATTCCTTAAGCACCTCTAACGGTGCTCCTCCAACAGATGCCG
CAAAATAACTAGGGCTCCAAAGTGATTCTTCATGGGGTTTTGGTAGTGCAGCTTTTCCATATCGACGACTAGATACGCCTTTAAGCGCATTTACGATCTG
CGAAAGAGAAAGTTTAGGAGGGTACTCGATTAGCGCATGGACATGGTCTTCCTCGCCGTTAAATTCAAGAATCTGGAAATCCATCTTCTTGGCGACTTCT
CGAAACGATTTCTCGATCAGCTCTAATCCCTCAGCGCTAAGGACTGGCCGGCAATACTTAGTCACGCATACCAAATGAATCTTCAGGTCCGTAACACTAT
GTCTCCCTTTACGAAGATGACTTGACATTGCCTGTAGACCAACCTATAATCTAGCTACAGACCAACTATATCACGACCAATGAAAGCTAGATATAGGTAT
CGTTTCTATCCCACAGACCAACAACGACAACGCCTAGCTCAGTTGTTTGGCTGTGTCCGTGTGGTATGGAACGACGCACTGGCAATTTGTAAACAATCTG
ATTCATTGCCAAAAACTAGTGAATTGCAAAAGCTAGTAATTACCCAAGGGAAGAAAACACCAGAGCGGCAATGGTTGTCTGATGTTTCTAATGTCCCGTT
ACAGCAGTCCGTTGCCGATTTAGGAGTTGCCTATAAAAACTTCTTCGATTCAATTAAAGGTCGGCGAAAAGGCAAGAAGATCAACCCTCCTAGATTTAAA
AAGAAGACAGAAAGACAATCCGCCAGATTTACTACCTATGGTTTTTCAATTAAAGGCGAAGAAGTTTATCTAGCGAAGATTGGTAATGTCAGACCAATTT
GGTCAAGAAAGCTTCCTTCTAAACCAAGCTCAGTTACGGTGATTAAAGATGCTGCAAATCGATATTTTCTCAGTTTTGTCGTCGAGATCGACCCAGTTCA
TCAACCTGCAAGTAATCCTTCTATCGGCATTGATTTGGGAATTAAAGCGTTTGCTACTTTAAGTACGGGCGAAAAGATTGATGGCCCTGATTATTCCAAG
TTAGACAAAAAGATCAGGCGAAAACAACGCAAACTGGCCCGTCAAGTTAAAGGAAGCCAACGGCGGGAGAAAACAAGACTGCAAATCGCTAAGCTTCATA
GTCGGATTTCAGACATTCGCAGGGATTTCTTGCATAAAGTGTCTACCCGCGTGGTTATCGAGAACCAAGTGATCACGCTGGAAGACTTGAATGTCTCTGG
AATGGTGAAGAACCGCAAACTCGCTAGAGCAATTAGCTTGCAAGGTTGGCGAGAATTCAGGGTTTTAGTTGAGGCTAAGTGCAACAAACTAAACCGTGAG
TTTATTGTCATTGACCGATGGGAGCCAACCAGTCAGACTTGCTCAAAATGCGGTTTTAAATGGGGCAAAGTCGATCTATCCGTTCGCTCGGTCGTATGTC
TAAATTGTGGTACAGAGCACGATAGAGACGAAAATGCTGCAAGAAACATAGAAAAAGTCGGGATAGGGCATTGCCACGACTATAAATGGACGCAGAGGGG
GAGTAAGACTACTTCGGTAGCATCACCCAGTGAAGCGTCAAGAATCATCGCACTTTAGGCCGGTGAGTATGTCAA
Protein section
ORF number : 2

 

ORF 1
LengthBeginEndStrandFusion ORF
399 bp132 aa42830-No
ORF function : Transposase
Chemistry : Y1

ORF sequence :

MSSHLRKGRHSVTDLKIHLVCVTKYCRPVLSAEGLELIEKSFREVAKKMDFQILEFNGEEDHVHALIEYPPKLSLSQIVNALKGVSSRRYGKAALPKPHE
ESLWSPSYFAASVGGAPLEVLKEYMRNQKKPS

 

Blast result :
ORF 2
LengthBeginEndStrandFusion ORF
1179 bp392 aa4801658+No
ORF function : Accessory Gene
AG : TnpB

ORF sequence :

MKARYRYRFYPTDQQRQRLAQLFGCVRVVWNDALAICKQSDSLPKTSELQKLVITQGKKTPERQWLSDVSNVPLQQSVADLGVAYKNFFDSIKGRRKGKK
INPPRFKKKTERQSARFTTYGFSIKGEEVYLAKIGNVRPIWSRKLPSKPSSVTVIKDAANRYFLSFVVEIDPVHQPASNPSIGIDLGIKAFATLSTGEKI
DGPDYSKLDKKIRRKQRKLARQVKGSQRREKTRLQIAKLHSRISDIRRDFLHKVSTRVVIENQVITLEDLNVSGMVKNRKLARAISLQGWREFRVLVEAK
CNKLNREFIVIDRWEPTSQTCSKCGFKWGKVDLSVRSVVCLNCGTEHDRDENAARNIEKVGIGHCHDYKWTQRGSKTTSVASPSEASRIIAL

 

Blast result :
Comments
ISTel2 is 67% aa(ORF1 : the transposase) similar to IS606 and 59% (ORFB) to ISPa18. There are 6 complete copies, 7 copies with internal deletions and 3 MITEs.
References
1] ISfinder annotation (2010)
2] Nakamura,Y., Kaneko,T., Sato,S., Ikeuchi,M., Katoh,H., Sasamoto,S., Watanabe,A., Iriguchi,M., Kawashima,K., Kimura,T., Kishida,Y., Kiyokawa,C., Kohara,M., Matsumoto,M., Matsuno,A., Nakazaki,N., Shimpo,S., Sugimoto,M., Takeuchi,C., Yamada,M. and Tabata,S. (2002) DNA Res. 9 (4), 123-130.