ISLpn12
- Family IS21
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_006368 | ND | Legionella pneumophila | Legionella pneumophila Paris Legionella pneumophila Corby Legionella pneumophila Paris plasmid pLPP |
DNA section
IS Length : 1996 bp
Ends
IR Length : 41/53
IRL : TGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCC
IRR : TGTCAATGCCGATTGAAAATTGATCCTTTTGCCAGATGAAAATTGATCCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AAAATTACTG | ACAATAG | TGCTTATATT | 7 |
CAGATAAGTA | TTTGCC | AGCAAGAATT | 6 |
ATTGTCCTTA | TTTCTC | ATCAATGACA | 6 |
ACTTTCCGAT | TAAA | TGAATGTTCA | 4 |
ATTGTCCTTA | TTTCTC | ATCAATGACA | 6 |
DNA sequence
TGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAGAATAAATTCTGGAGGAGGGAATGATT
CAATTAGAGGAGTCAAAAATGATTCATATTTTGTATAAGCAGGGATACAGTAAAAAAGCGATTGCTAGAAAATTGGGTATGTCGATAAATACTGTTCGAA
AATATCTTAAAAGTGGTTCAGAGCCTTATTACAAAAGGCGTGATAAAAAGCCATTAAAGCTTGACCCCTATAAAGCATATATTCAAAAAAGATTAAAAGA
TGCAACACCTCATTGGGTACCAGCTACTGTGATTTATCGAGAGATTAAATTGTTTGGTTATGATGGATGCAGCTCCCAATTAAGAGCATATATGCATACT
TTAAGGTCAAAAAAAGAAGATGTTATTGTTCGGTTTGAAACAGAGCCTGGACAGCAGATGCAGGTGGATTGGGCTCAATTCCGAAGAGGAAAGGATAGAT
TAAGTGCTTTTATTGCAACCATGGGATATTCCAGAGCATCTTATGTAGAGTTTGTCAGCGATGAAACCTTGGAAACGCTTATTGCATGCCATAAAAATGC
ATTCGAATATTTTGGTGGAGTTCCTTATACGATCCTATATGACAATATGAAAACAGTCATTATTGAACGAAATGGATATGGCCTAAGTCAACATCGATTT
CAAGCTGGTTTTTGGGATTTTGCAAAACATACTGGATTTCGTCCTAAAGTGTGTCAACCTTATAGGGCACAAACAAAAGGTAAAGTTGAACGCTTTATTC
ATTATTTAAAGTACAGTTTTTATTTTCCTTTAGTTGGGCAATTGAAGGCACTTGGCTTAAGTTTAGATAAAGAGACAGCCAATATGCATGTTTTAAAATG
GCTAAATGAAATTGCTAATCAACGAGTACATGCTACAACAGGAGCAATTCCATTCGAACGACTTCTTGATGAACAAGCGAAACTACAACCATTGTCATCT
ACCTATTCTGGTAAATTATTTTCTCATTTGGAAAATAAGGAGGTTCACTATTTTGCCTTTCAATTATTAGACAACACTGCAATGCAACATGAATTGTCAA
TTTATCAGAAACTACTCGAGCGCACAGAGGAGGCTGCATGAATATTCAACATGAGCGTATTTTATCACTATGTGAACGCTTGAATTTATCAGCGATAGCG
ACAAATTACTCTTATTTAGCTCAAGAGGCAGCAACTCATAATCAAGGATTTAGTGATTTTTTAGAAAATGTATTGACTGTGGAGTTACAGGAAAAACAGT
ATCGAAGTCGAACCCTGCTCACTAAAATGGCTGGTTTTCCAATGATTAAAACAATAGATGATTTTGATTTTAAATTTGCTTCTGGTGTACCAAAAAATAA
AATCCGAGAACTGACTTCTTTGGCTTTCATTGAACGACAGGAAAATATTTTATTACTTGGTCCTAGTGGATTAGGCAAGACTCATTTAGCGATTGCTCTG
GGTTATTTAGCAGTTCAAGCAAACATTAAAACAAAATTTATTAGCGCAGCAGATTTGATGTTATTGCTTGAAACAGCTCATCGCCAAGGGCGATATAAAG
ATATTATGCGACGGGTTATTAATAATGCTCGACTGCTCATTATTGATGAAATTGGATATTTACCAATGAACCGAGATCAGGCAAATCATTTCTTCCAAGT
TATTGCAAATCGCTATGAAAAAGGTTCTATTATTGCCACCTCCAATCTCGCTTTTGGTCAATGGGACAATACTTTCGCCGGCGATAAAGTATTAACAGCG
GCTATGCTCGACAGGTTGCTCCATCATGCTCATGTCATTCAATGCAGAGGCGACAGTTATAGATTAAAAGACAAATTTAAGGCCGGTTTAATTCAAAATC
AGAAGGAGGAGCAAAATAATATAACTGATTAATTTTTTTACCAGGGGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACA
CAATTAGAGGAGTCAAAAATGATTCATATTTTGTATAAGCAGGGATACAGTAAAAAAGCGATTGCTAGAAAATTGGGTATGTCGATAAATACTGTTCGAA
AATATCTTAAAAGTGGTTCAGAGCCTTATTACAAAAGGCGTGATAAAAAGCCATTAAAGCTTGACCCCTATAAAGCATATATTCAAAAAAGATTAAAAGA
TGCAACACCTCATTGGGTACCAGCTACTGTGATTTATCGAGAGATTAAATTGTTTGGTTATGATGGATGCAGCTCCCAATTAAGAGCATATATGCATACT
TTAAGGTCAAAAAAAGAAGATGTTATTGTTCGGTTTGAAACAGAGCCTGGACAGCAGATGCAGGTGGATTGGGCTCAATTCCGAAGAGGAAAGGATAGAT
TAAGTGCTTTTATTGCAACCATGGGATATTCCAGAGCATCTTATGTAGAGTTTGTCAGCGATGAAACCTTGGAAACGCTTATTGCATGCCATAAAAATGC
ATTCGAATATTTTGGTGGAGTTCCTTATACGATCCTATATGACAATATGAAAACAGTCATTATTGAACGAAATGGATATGGCCTAAGTCAACATCGATTT
CAAGCTGGTTTTTGGGATTTTGCAAAACATACTGGATTTCGTCCTAAAGTGTGTCAACCTTATAGGGCACAAACAAAAGGTAAAGTTGAACGCTTTATTC
ATTATTTAAAGTACAGTTTTTATTTTCCTTTAGTTGGGCAATTGAAGGCACTTGGCTTAAGTTTAGATAAAGAGACAGCCAATATGCATGTTTTAAAATG
GCTAAATGAAATTGCTAATCAACGAGTACATGCTACAACAGGAGCAATTCCATTCGAACGACTTCTTGATGAACAAGCGAAACTACAACCATTGTCATCT
ACCTATTCTGGTAAATTATTTTCTCATTTGGAAAATAAGGAGGTTCACTATTTTGCCTTTCAATTATTAGACAACACTGCAATGCAACATGAATTGTCAA
TTTATCAGAAACTACTCGAGCGCACAGAGGAGGCTGCATGAATATTCAACATGAGCGTATTTTATCACTATGTGAACGCTTGAATTTATCAGCGATAGCG
ACAAATTACTCTTATTTAGCTCAAGAGGCAGCAACTCATAATCAAGGATTTAGTGATTTTTTAGAAAATGTATTGACTGTGGAGTTACAGGAAAAACAGT
ATCGAAGTCGAACCCTGCTCACTAAAATGGCTGGTTTTCCAATGATTAAAACAATAGATGATTTTGATTTTAAATTTGCTTCTGGTGTACCAAAAAATAA
AATCCGAGAACTGACTTCTTTGGCTTTCATTGAACGACAGGAAAATATTTTATTACTTGGTCCTAGTGGATTAGGCAAGACTCATTTAGCGATTGCTCTG
GGTTATTTAGCAGTTCAAGCAAACATTAAAACAAAATTTATTAGCGCAGCAGATTTGATGTTATTGCTTGAAACAGCTCATCGCCAAGGGCGATATAAAG
ATATTATGCGACGGGTTATTAATAATGCTCGACTGCTCATTATTGATGAAATTGGATATTTACCAATGAACCGAGATCAGGCAAATCATTTCTTCCAAGT
TATTGCAAATCGCTATGAAAAAGGTTCTATTATTGCCACCTCCAATCTCGCTTTTGGTCAATGGGACAATACTTTCGCCGGCGATAAAGTATTAACAGCG
GCTATGCTCGACAGGTTGCTCCATCATGCTCATGTCATTCAATGCAGAGGCGACAGTTATAGATTAAAAGACAAATTTAAGGCCGGTTTAATTCAAAATC
AGAAGGAGGAGCAAAATAATATAACTGATTAATTTTTTTACCAGGGGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACA
Protein section
ORF number : 2
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1023 bp | 340 aa | 119 | 1141 | + | No |
Chemistry : DDE
ORF sequence :
MIHILYKQGYSKKAIARKLGMSINTVRKYLKSGSEPYYKRRDKKPLKLDPYKAYIQKRLKDATPHWVPATVIYREIKLFGYDGCSSQLRAYMHTLRSKKE
DVIVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLETLIACHKNAFEYFGGVPYTILYDNMKTVIIERNGYGLSQHRFQAGFWD
FAKHTGFRPKVCQPYRAQTKGKVERFIHYLKYSFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPLSSTYSGKL
FSHLENKEVHYFAFQLLDNTAMQHELSIYQKLLERTEEAA
DVIVRFETEPGQQMQVDWAQFRRGKDRLSAFIATMGYSRASYVEFVSDETLETLIACHKNAFEYFGGVPYTILYDNMKTVIIERNGYGLSQHRFQAGFWD
FAKHTGFRPKVCQPYRAQTKGKVERFIHYLKYSFYFPLVGQLKALGLSLDKETANMHVLKWLNEIANQRVHATTGAIPFERLLDEQAKLQPLSSTYSGKL
FSHLENKEVHYFAFQLLDNTAMQHELSIYQKLLERTEEAA
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
795 bp | 264 aa | 1138 | 1932 | + | No |
AG : IS21 helper
ORF sequence :
MNIQHERILSLCERLNLSAIATNYSYLAQEAATHNQGFSDFLENVLTVELQEKQYRSRTLLTKMAGFPMIKTIDDFDFKFASGVPKNKIRELTSLAFIER
QENILLLGPSGLGKTHLAIALGYLAVQANIKTKFISAADLMLLLETAHRQGRYKDIMRRVINNARLLIIDEIGYLPMNRDQANHFFQVIANRYEKGSIIA
TSNLAFGQWDNTFAGDKVLTAAMLDRLLHHAHVIQCRGDSYRLKDKFKAGLIQNQKEEQNNITD
QENILLLGPSGLGKTHLAIALGYLAVQANIKTKFISAADLMLLLETAHRQGRYKDIMRRVINNARLLIIDEIGYLPMNRDQANHFFQVIANRYEKGSIIA
TSNLAFGQWDNTFAGDKVLTAAMLDRLLHHAHVIQCRGDSYRLKDKFKAGLIQNQKEEQNNITD
Blast result :
Comments
In L. pneumophila str Paris, 1 IS is inserted in a gene coding a substrate of the Dot/Icm system.
2 copies are found in L. pneumophila str. Paris, 1 in L. pneumophila str. Paris plasmid pLPP, and 1 in L. pneumophila str. Corby.
ISLpn12 orfA (the Transposase) is 72% aa similar to ISGme4.
2 copies are found in L. pneumophila str. Paris, 1 in L. pneumophila str. Paris plasmid pLPP, and 1 in L. pneumophila str. Corby.
ISLpn12 orfA (the Transposase) is 72% aa similar to ISGme4.
References
1] Cazalet et al., (1998) Nat Genet. Nov;36(11):1165-73.