ISLpn9

  • Family IS4
  • Group IS10
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
CR628336 ND Legionella pneumophila
Legionella pneumophila subsp. pneumophila Philadelphia 1
Legionella pneumophila str. Paris
DNA section
IS Length : 1628 bp

Ends


IR Length : 65/67

IRL : CTCTGTACGGTACGATTTTTGGGACCGTCGTTGCGAGGAGCGTAGCGACG
IRR : CTCTGTACGGTACGATTTTTGGGACCGTCGTTGCGAGGAGCATAGCGACG

Insertion site


Left flankDirect repeatRight flankDR Length
ACCTCTTGAAAGTAAATAGGATAAAAGAGTT9
GAATTTTTGCTCTTGTCATTAAAGAAATATT9
GCTAAACGAATATTATTCCTTTTTACCTTGT9
AGTAATAATGTATTAAGAATGATAAATGCTT9
ATGGTTTTTAAATGAAACTCAGAATTTCAGC9
AACGATTCTTTATACTTAAGTACTAACATGC9
CAATTTTGTCTCTCATTTTCACTGAAATGTT9
GCTAAACGAATATTATTCCTTTTTACCTTGT9

DNA sequence

CTCTGTACGGTACGATTTTTGGGACCGTCGTTGCGAGGAGCGTAGCGACGAAGCAATCCAGTGGCCTGAATTCGTTGAAGTAGCTCACTGATTCATTGAT
AATCCATATTTTTTCCGCTAAGAAACGACATGGAGTCGTGAATGAGTATCACTGAGCTGTCAGATATTTTAAATGGTTATTTTTCATGGAACAAGTCGCG
AATCGAGTGTTTTGCGACGATGTTAATCTCTTTAATCAAAGTAAGAACGGTCAATTTAACTGAGATTGCATGTGGTTTTTCTAGCCCTGCTAAACAAGAT
TCAAGGTACACAAGAATCAAACGATTTTTTAGAGAATTTAAGATTGATTTTTCTAGTGTTTCAGTCTGGGTTATTCATTGTTTTGGTCTATCGGGGCAGG
CACTCTATCTCAGCATGGATCGAACCAATTGGCGTTGGGGCAAAAAAGACATCAATATTTTAATGCTATCAGTTGTGTATAAAGGGATAGCAATACCATT
ATTTTGGACATTGTTAGCTAAAGGAGGAAATAGTGATACAAGAGAGAGAATTGAAATCGTCCAGCGTTTTATCACGAAATTTGGAAAATCAATGATTGCT
GGATTACTTGCTGACCGAGAATTTGTTGGTGACAACTGGTTTGCATGGTTGTTGACGGAAAAAATACCATTTTGTATTCGCATCAAAAACAATGTTATTA
CTACAAATAGTCGAGGCTTAGAGGTAAGTATTGATGCCTTGTTTTATGATTTGAAATCAGGAGAACAAAGAATTTTACAAGGCTTGAGAAAATTATGGAG
ACAAAAGATATATTTAAGTGCGCTGAGACTTGCCGATGGTGAATTATTGATTGTAGCTACCGATCATTTAATGTATGAACCTATTGAACATTATGCCTTG
CGTTGGGAAATAGAAACGTTGTTTTCATGTCTCAAAGGGCGTGGCTTCAACTTTGAAGACACACACATGACTCAACCGGATCGCATTGAAAAATTACTGG
TGCTATTGACCATTGCTTTTTGTTGGGCCCATAAAACTGGAGAGTGGCGGCATGTTCAGAAGGCAATTAAAATCAAAAAACATGGTCGCAAAGGGGTAAG
TTTTTTTCGTTATGGACTTGATTTATTACGTGATGCTGCGCTTAATGGCTGTCAGTTTATTCGCCATTCTTTCTCCGATATACTTGGGTTTTTGTGCATT
AGTCGCGTGATATGCGCTGCTGAATGAATTGGTCCAATAACAAGGAAGAAGCATGCAAGTGAAACAACCAGCCATTTACATCATGGCGAATAAACGCAAT
GGAACGATCTACACGGGTGTCACAAGCGATTTGATCAAACGTGTCTATGAACATAAATATGGGGATGTACCCGGGTTTACTCAAGAGCATGGATGTAAGT
TTCTTGTTTACTATGAGCTCATTGAAGACATGATAAGTGCCATAGCTCGAGAAAAACAACTTAAAGGCGGGTCAAGAAAAAAGAAATTGGCTTTAATTGA
AAAGCTAAACCCTTATTGGGAAGATCTTTACGAAAAACTGTTGTGAAGATTAGCAATTTTAAGGTCACTGGATTGCTTCGTCGCTATGCTCCTCGCAACG
ACGGTCCCAAAAATCGTACCGTACAGAG
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1086 bp361 aa1421227+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MSITELSDILNGYFSWNKSRIECFATMLISLIKVRTVNLTEIACGFSSPAKQDSRYTRIKRFFREFKIDFSSVSVWVIHCFGLSGQALYLSMDRTNWRWG
KKDINILMLSVVYKGIAIPLFWTLLAKGGNSDTRERIEIVQRFITKFGKSMIAGLLADREFVGDNWFAWLLTEKIPFCIRIKNNVITTNSRGLEVSIDAL
FYDLKSGEQRILQGLRKLWRQKIYLSALRLADGELLIVATDHLMYEPIEHYALRWEIETLFSCLKGRGFNFEDTHMTQPDRIEKLLVLLTIAFCWAHKTG
EWRHVQKAIKIKKHGRKGVSFFRYGLDLLRDAALNGCQFIRHSFSDILGFLCISRVICAAE

 

Blast result :
Comments
The copy number in Legionella pneumophila str. Paris. 1 is 7 plus 2 truncated copy and in L. pneumophila str Philadelphia, 1 copy is found.
ISLpn9 is 58% aa similar to ISSysp2.
References
1] Cazalet,C., et al. (1998) Nat Genet. 2004 Nov;36(11):1165-73.