ISSis3
- Family IS5
- Group IS903
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_012622 | ND | Sulfolobus islandicus | Sulfolobus islandicus Y.G.57.14 |
DNA section
IS Length : 1057 bp
Ends
IR Length : 19/26
IRL : TGCTTTGTGGGCTACTTCAGAATTATACAAAAATTTATAAATAATTATAC
IRR : TGCTTTGTTGATCTCTTCAATTTATTTCATAAGCATGATATGATACACTG
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
AATCATGACA | CTTCCAGTG | GAAATATTTA | 9 |
TATTACGATA | ATTTCCTAGA | 0 |
DNA sequence
TGCTTTGTGGGCTACTTCAGAATTATACAAAAATTTATAAATAATTATACCGAGTATTACCCATGGGAAAGAGTAAGTACAAGAGGGATTGGCACAAGTA
CGACGAGAACGTCATAACGAGATATACCCTAATGTTCCCCTTCTACGTCTTCGAACACTGGTGGGATTTACTAGCAGAGGAGAATAAGCATGCCAAGAAA
ACCTACAAGGCACCAAAGGAGTTCAACGAATTCCTAGCATTCCTCCACATCTTCCTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCACTAGAGAGAC
TGAAAATCATCCCAACAAGCCTAGACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGGCAAATGACCAACTTGAAGTAAT
AGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGTAAAACCAAGGACTCAAAATTCCTCAAGATCGAAATAGTA
ATGGATAAGGACCAATTCAACGTAATAAACGCTGAAGTAACCAGCAACGAGGTTGAGACTGCAGTTAAGACAGTTAAGGATTTACAAGATAAGGGAAAGA
AGGTCAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTCCCACCTAGGAAGAACGCTTCTACTAG
GCGTGGCCATCCTGCTAGGAGAAAGGCTGTAAGGGAGTTCAAGAGGTTGGGTTATAATCGTTGGAGGGAGGAGAAGGGTTATGGTGTTAGGTGGAGGATT
GAGTCCTTATTCTCTGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAGCTCAAGTTCTGGGCTT
ATGCATGGATGGTCCACTTGGCTAATTCTGTAGTCGGTAGAGCTCCGGGTATTAGGGTGTGAGCTTGCGAATAACGTTGAAATAAATATTAATTACTGAA
AAATTCTCAGTGTATCATATCATGCTTATGAAATAAATTGAAGAGATCAACAAAGCA
CGACGAGAACGTCATAACGAGATATACCCTAATGTTCCCCTTCTACGTCTTCGAACACTGGTGGGATTTACTAGCAGAGGAGAATAAGCATGCCAAGAAA
ACCTACAAGGCACCAAAGGAGTTCAACGAATTCCTAGCATTCCTCCACATCTTCCTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCACTAGAGAGAC
TGAAAATCATCCCAACAAGCCTAGACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGGCAAATGACCAACTTGAAGTAAT
AGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGTAAAACCAAGGACTCAAAATTCCTCAAGATCGAAATAGTA
ATGGATAAGGACCAATTCAACGTAATAAACGCTGAAGTAACCAGCAACGAGGTTGAGACTGCAGTTAAGACAGTTAAGGATTTACAAGATAAGGGAAAGA
AGGTCAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTCCCACCTAGGAAGAACGCTTCTACTAG
GCGTGGCCATCCTGCTAGGAGAAAGGCTGTAAGGGAGTTCAAGAGGTTGGGTTATAATCGTTGGAGGGAGGAGAAGGGTTATGGTGTTAGGTGGAGGATT
GAGTCCTTATTCTCTGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAGCTCAAGTTCTGGGCTT
ATGCATGGATGGTCCACTTGGCTAATTCTGTAGTCGGTAGAGCTCCGGGTATTAGGGTGTGAGCTTGCGAATAACGTTGAAATAAATATTAATTACTGAA
AAATTCTCAGTGTATCATATCATGCTTATGAAATAAATTGAAGAGATCAACAAAGCA
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
900 bp | 299 aa | 63 | 962 | + | No |
Chemistry : DDE
ORF sequence :
MGKSKYKRDWHKYDENVITRYTLMFPFYVFEHWWDLLAEENKHAKKTYKAPKEFNEFLAFLHIFLPYRAIEGVLRALERLKIIPTSLDYSTIWERVRNMN
IKFPEANDQLEVIADATGISTNKGGQYIIAKWGKTKDSKFLKIEIVMDKDQFNVINAEVTSNEVETAVKTVKDLQDKGKKVKKFYGDKAYDANEVYKTGV
EVVVPPRKNASTRRGHPARRKAVREFKRLGYNRWREEKGYGVRWRIESLFSAVKRTFGESVRATSFLGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV
IKFPEANDQLEVIADATGISTNKGGQYIIAKWGKTKDSKFLKIEIVMDKDQFNVINAEVTSNEVETAVKTVKDLQDKGKKVKKFYGDKAYDANEVYKTGV
EVVVPPRKNASTRRGHPARRKAVREFKRLGYNRWREEKGYGVRWRIESLFSAVKRTFGESVRATSFLGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV
Blast result :
Comments
ISSis3 is 95% aa similar to ISC1058.
References
1] ISfinder annotation (2010)
2] Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D.R., Brettin,T., Bruce,D., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Whitaker,R.J. and Richardson,P. (2009) Direct submission GenBank
2] Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610
3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D.R., Brettin,T., Bruce,D., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Whitaker,R.J. and Richardson,P. (2009) Direct submission GenBank