ISSis3

  • Family IS5
  • Group IS903
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NC_012622 ND Sulfolobus islandicus
Sulfolobus islandicus Y.G.57.14
DNA section
IS Length : 1057 bp

Ends


IR Length : 19/26

IRL : TGCTTTGTGGGCTACTTCAGAATTATACAAAAATTTATAAATAATTATAC
IRR : TGCTTTGTTGATCTCTTCAATTTATTTCATAAGCATGATATGATACACTG

Insertion site


Left flankDirect repeatRight flankDR Length
AATCATGACACTTCCAGTGGAAATATTTA9
TATTACGATAATTTCCTAGA0

DNA sequence

TGCTTTGTGGGCTACTTCAGAATTATACAAAAATTTATAAATAATTATACCGAGTATTACCCATGGGAAAGAGTAAGTACAAGAGGGATTGGCACAAGTA
CGACGAGAACGTCATAACGAGATATACCCTAATGTTCCCCTTCTACGTCTTCGAACACTGGTGGGATTTACTAGCAGAGGAGAATAAGCATGCCAAGAAA
ACCTACAAGGCACCAAAGGAGTTCAACGAATTCCTAGCATTCCTCCACATCTTCCTACCTTATAGGGCCATAGAAGGAGTATTGAGAGCACTAGAGAGAC
TGAAAATCATCCCAACAAGCCTAGACTACTCAACAATATGGGAAAGAGTAAGAAACATGAACATAAAATTCCCAGAGGCAAATGACCAACTTGAAGTAAT
AGCAGACGCAACGGGAATAAGCACAAACAAGGGAGGACAATACATTATAGCAAAATGGGGTAAAACCAAGGACTCAAAATTCCTCAAGATCGAAATAGTA
ATGGATAAGGACCAATTCAACGTAATAAACGCTGAAGTAACCAGCAACGAGGTTGAGACTGCAGTTAAGACAGTTAAGGATTTACAAGATAAGGGAAAGA
AGGTCAAGAAGTTTTATGGAGATAAAGCTTATGATGCTAATGAGGTTTACAAGACTGGGGTTGAGGTTGTTGTCCCACCTAGGAAGAACGCTTCTACTAG
GCGTGGCCATCCTGCTAGGAGAAAGGCTGTAAGGGAGTTCAAGAGGTTGGGTTATAATCGTTGGAGGGAGGAGAAGGGTTATGGTGTTAGGTGGAGGATT
GAGTCCTTATTCTCTGCTGTGAAGCGTACTTTTGGGGAATCTGTTAGGGCTACAAGTTTTTTAGGACAAGTGGTTGAGGCTAAGCTCAAGTTCTGGGCTT
ATGCATGGATGGTCCACTTGGCTAATTCTGTAGTCGGTAGAGCTCCGGGTATTAGGGTGTGAGCTTGCGAATAACGTTGAAATAAATATTAATTACTGAA
AAATTCTCAGTGTATCATATCATGCTTATGAAATAAATTGAAGAGATCAACAAAGCA
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
900 bp299 aa63962+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MGKSKYKRDWHKYDENVITRYTLMFPFYVFEHWWDLLAEENKHAKKTYKAPKEFNEFLAFLHIFLPYRAIEGVLRALERLKIIPTSLDYSTIWERVRNMN
IKFPEANDQLEVIADATGISTNKGGQYIIAKWGKTKDSKFLKIEIVMDKDQFNVINAEVTSNEVETAVKTVKDLQDKGKKVKKFYGDKAYDANEVYKTGV
EVVVPPRKNASTRRGHPARRKAVREFKRLGYNRWREEKGYGVRWRIESLFSAVKRTFGESVRATSFLGQVVEAKLKFWAYAWMVHLANSVVGRAPGIRV

 

Blast result :
Comments
ISSis3 is 95% aa similar to ISC1058.
References
1] ISfinder annotation (2010)

2] Reno,M.L., Held,N.L., Fields,C.J., Burke,P.V. and Whitaker,R.J. (2009) Proc. Natl. Acad. Sci. U.S.A. 106 (21), 8605-8610

3] Copeland,A., Lucas,S., Lapidus,A., Barry,K., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Sims,D.R., Brettin,T., Bruce,D., Detter,J.C., Han,C., Kuske,C.R., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Anderson,I., Whitaker,R.J. and Richardson,P. (2009) Direct submission GenBank