ISCaa2
- Family IS5
- Group ISL2
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NC_010830 | ND | Candidatus Amoebophilus | Candidatus Amoebophilus asiaticus 5a2 |
DNA section
IS Length : 908 bp
Ends
IR Length : 16/17
IRL : AGACTTCTTTCGAAACTAGGATTTACAAAAAATGAGTAAATTGGGTGTAA
IRR : AGACCTCTTTCGAAACTTAAATTGAGAGTTCATAATTATGGATTGCGGCT
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
TCCATTTATC | AAT | GTCTTTGTTA | 3 |
ATAGGTAGTT | ATT | AAATAAAATA | 3 |
TTTTTAAATA | AT | TTTACGATTT | 2 |
DNA sequence
AGACTTCTTTCGAAACTAGGATTTACAAAAAATGAGTAAATTGGGTGTAAAAAGAGGCAATAAGCATGAAATATGAGCAAACAAAGGAGTTAGAAGAAGA
GAAATTCCGTCGTTTAACAGGTATTAAACGTCCTACATTTGACAAAATGATAGCTATACTTAACCAAGCTAACATACAGAAAAGGACCCGCGGTGGGCGT
AAGCATAAACTTTGTATGGAAGACCAGTTGTTAATGGCTTTAGAATATCTAAGGGAATACCGCACTTATTTTCATATAGCACAAAGTTATGGCATTAGTG
AGAGTAGTGCATACAAGGGAATAAAGTGGATAGAAAACACTTTAATCAAGCATCCAGCCTTTGCTCTGCCTGGTAGGAAAGCCCTACGCAAAAGTGAGTG
TGGGTATGAGGTTATACTAATAGATGCTACAGAAAGCCCTATTGAGCGACCTAAAAAAAGCAAAGACACTTTTACTCTGGAAAAAGAAAAAGGCATACAC
TCAAAAGTCAACTTATTGTCGACAAGCAAAGCAAAATAGTAATATGCACCAGTTTTACAAATGGAAAACGGCATGACTTTCGCTTGTTCAAAGAGTCTAA
AGTTCGCATTAATCAACAAATAGAAGTAATAGCAGATACAGGCTATCAGGGTTTAAACAAACTACATGCGAAAACAAAACTTCCTAAAAAGCGAACTCGC
AAGCACCCTTTAACTAAACAGGAGAGAAGAAGCAATGCCCTATTAGCCAGCCAAAGGGTACTTAATGAAAATGTTATCGCCATGCTTAAACGCTTTAAAA
TCCTTTCTGATAGATATCGTAATAGAAGAAAACGCTTTGGCCTTAGGTTTAATTTAATAGCCGCAATCCATAATTATGAACTCTCAATTTAAGTTTCGAA
AGAGGTCT
GAAATTCCGTCGTTTAACAGGTATTAAACGTCCTACATTTGACAAAATGATAGCTATACTTAACCAAGCTAACATACAGAAAAGGACCCGCGGTGGGCGT
AAGCATAAACTTTGTATGGAAGACCAGTTGTTAATGGCTTTAGAATATCTAAGGGAATACCGCACTTATTTTCATATAGCACAAAGTTATGGCATTAGTG
AGAGTAGTGCATACAAGGGAATAAAGTGGATAGAAAACACTTTAATCAAGCATCCAGCCTTTGCTCTGCCTGGTAGGAAAGCCCTACGCAAAAGTGAGTG
TGGGTATGAGGTTATACTAATAGATGCTACAGAAAGCCCTATTGAGCGACCTAAAAAAAGCAAAGACACTTTTACTCTGGAAAAAGAAAAAGGCATACAC
TCAAAAGTCAACTTATTGTCGACAAGCAAAGCAAAATAGTAATATGCACCAGTTTTACAAATGGAAAACGGCATGACTTTCGCTTGTTCAAAGAGTCTAA
AGTTCGCATTAATCAACAAATAGAAGTAATAGCAGATACAGGCTATCAGGGTTTAAACAAACTACATGCGAAAACAAAACTTCCTAAAAAGCGAACTCGC
AAGCACCCTTTAACTAAACAGGAGAGAAGAAGCAATGCCCTATTAGCCAGCCAAAGGGTACTTAATGAAAATGTTATCGCCATGCTTAAACGCTTTAAAA
TCCTTTCTGATAGATATCGTAATAGAAGAAAACGCTTTGGCCTTAGGTTTAATTTAATAGCCGCAATCCATAATTATGAACTCTCAATTTAAGTTTCGAA
AGAGGTCT
Recoding section
- Recoding by frameshift
- Frame
- Type
- Experimentally demonstrated
Stimulators :
- Shine-Dalgarno sequence :
- Secondary structure :
Recoding motif :
Protein section
ORF number : 3
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
474 bp | 157 aa | 66 | 539 | + | No |
Description : First part of the transposase
ORF sequence :
MKYEQTKELEEEKFRRLTGIKRPTFDKMIAILNQANIQKRTRGGRKHKLCMEDQLLMALEYLREYRTYFHIAQSYGISESSAYKGIKWIENTLIKHPAFA
LPGRKALRKSECGYEVILIDATESPIERPKKSKDTFTLEKEKGIHSKVNLLSTSKAK
LPGRKALRKSECGYEVILIDATESPIERPKKSKDTFTLEKEKGIHSKVNLLSTSKAK
Blast result :ORF 2
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
438 bp | 145 aa | 455 | 892 | + | No |
Description : Second part of the transposase
ORF sequence :
KKQRHFYSGKRKRHTLKSQLIVDKQSKIVICTSFTNGKRHDFRLFKESKVRINQQIEVIADTGYQGLNKLHAKTKLPKKRTRKHPLTKQERRSNALLASQ
RVLNENVIAMLKRFKILSDRYRNRRKRFGLRFNLIAAIHNYELSI
RVLNENVIAMLKRFKILSDRYRNRRKRFGLRFNLIAAIHNYELSI
Blast result :ORF 3
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
827 bp | 275 aa | 66 | 892 | + | Yes |
Chemistry : DDE
ORF sequence :
MKYEQTKELEEEKFRRLTGIKRPTFDKMIAILNQANIQKRTRGGRKHKLCMEDQLLMALEYLREYRTYFHIAQSYGISESSAYKGIKWIENTLIKHPAFA
LPGRKALRKSECGYEVILIDATESPIERPKKKQRHFYSGKRKRHTLKSQLIVDKQSKIVICTSFTNGKRHDFRLFKESKVRINQQIEVIADTGYQGLNKL
HAKTKLPKKRTRKHPLTKQERRSNALLASQRVLNENVIAMLKRFKILSDRYRNRRKRFGLRFNLIAAIHNYELSI
LPGRKALRKSECGYEVILIDATESPIERPKKKQRHFYSGKRKRHTLKSQLIVDKQSKIVICTSFTNGKRHDFRLFKESKVRINQQIEVIADTGYQGLNKL
HAKTKLPKKRTRKHPLTKQERRSNALLASQRVLNENVIAMLKRFKILSDRYRNRRKRFGLRFNLIAAIHNYELSI
Blast result :
Comments
ISCaa2 is 69% aa similar to IS702.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
The third ORF is a putative ORFAB transposase reconstructed in silico by a possible -1 frameshift.
References
1] ISfinder annotation (2010).
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Horn,M. and Richardson,P. (2008) Direct submission Genbank.
2] Lucas,S., Copeland,A., Lapidus,A., Glavina del Rio,T., Dalin,E., Tice,H., Pitluck,S., Chain,P., Malfatti,S., Shin,M., Vergez,L., Lang,D., Schmutz,J., Larimer,F., Land,M., Hauser,L., Kyrpides,N., Ovchinnikova,G., Horn,M. and Richardson,P. (2008) Direct submission Genbank.