ISRssp12
- Family IS1182
- Group
Isoform Synonym(s)
| Accession number | Transposition | Origin | Host |
|---|---|---|---|
| NZ_AAMV01000012 | ND | Roseovarius sp. | Roseovarius sp. 217 |
DNA section
IS Length : 1554 bp
Ends
IR Length : 18/28
IRL : CACGGCGTATTTTGTTGAAAAACTCGTGCTTGATCGAAGCGTAAGTTGCT
IRR : CACTTTCCGCCGATTGTGTGGAAAAACTAACGTTTGCGAGCGCAGAAATG
Insertion site
| Left flank | Direct repeat | Right flank | DR Length |
|---|---|---|---|
| CGCATCCGCAGCATTAGCAACGTG | TGAATTCGCTGCACCTGCGCAG | 0 |
DNA sequence
CACGGCGTATTTTGTTGAAAAACTCGTGCTTGATCGAAGCGTAAGTTGCTGATTCACTTCTTCTGACCAGCGGGAGAATTGAGCAATGTTGGGACCGAGA
CAGGAAGCGCAGGCAGCACTTTTCTACGAGTTCTCGCTTGAGGATCACGTTCCGCAAGACCACCTTCTTCGCTCCATCGACCGGTTTGTCGATCTGAACA
GCATCCGCACCCATCTTGCCGGTTTCTACAGTCACACCGGCCGTCCGTCGGTCGATCCCGAACTGCTGATCCGGATGCTGCTGGTCGGGTATTGCTTCGG
CATCCGGTCCGAACGGCGGCTGTGCGAAGAGGTGCATCTGAACCTCGCGTATCGCTGGTTCTGCCGGCTTGACCTGAGTGACCGGGTCCCGGATCATTCG
ACATTTTCCAAGAACCGACATGGGCGTTTCCGCGACAGCGAACTTCTGCGACACCTGTTCGAGACGACTGTCGCGCGCTGCATCGCGGAGGGTCTGGTCA
GTGGCCAACGCATGGCCATCGACGCCAGCCTGATCGAGGCGGATGCCAACAAGCAGAACTCGACACCGAAGGACGACTGGGACGCGGCGCGGATTGATCC
GGCGGATGCACCCCGTGCCGTGCGCGAGTATCTCGACACGCTGGATGAGGCGGCATTCGGCGCTGCCAGCGAGGTGCAGCCCAAGTTCACCTCGCATTCG
GACCCGGCCAGCCAGTGGACCGCCGCGCGCAAGGGGCCCGCTTTCTTCAGCTATTCCGACAACTACCTGATCGACACGGATCATGGCGTGATTGTCGATG
TAGAAGCCACAAGGTCGATCCGGCAGGCCGAGGTCGGATCGACCAAGACCATGCTGAAGCGGGTGAAGGCCAGGTTCGATCTGCACCCCGAACGCCTGAT
CGCGGATACGGCTTACGGCACCGGGCCGATGCTGGGCTGGCTGGTCGATCGCAAGATCGCGCCGCACATCCCGGTTATAGACAAGTCCGGACGCAACGAC
GGCACTTGGACGCGGGCAGAGTTCGAGTGGGACGCCGAGAACGACCAATATATCTGCCCCGAGGGCCATGAGCTGAAGCAGTTCCGCCGCAACTACTCGG
ACCCGAACCGGGGACCAACCGGCAAGGGCACAGCCCGTTACCGCGCATTGAAGGACGTCTGCCAGGCGTGCCCATCCAAAGCCAAATGCTGCCCCAACGC
CGAGGCGCGCAAGATCACCCGCGAAGAGCATGAAGACGCCCGCCAAGTCGCCCGCGACATCGCCAAGACCCGCCAATACGACATCTCGATGAAGCTCCGA
AAAAAGGTCGAGATGCTATTTGCCCACCTCAAACGCATCCTTGGCTTAGGCCGACTGCGATTACGTGGTCCATGCGGCGCAAATGACGAATTCCTCCTCG
CCGCAACCGCCCAGAACCTCCGGAAACTGGCCAAGATCTTTCCCGCACCGCAGCAAACGCGAAAAGCCTGACAGGAAAGGCGCTCGCGCCGCATTTGGAA
CAGACATTTCTGCGCTCGCAAACGTTAGTTTTTCCACACAATCGGCGGAAAGTG
CAGGAAGCGCAGGCAGCACTTTTCTACGAGTTCTCGCTTGAGGATCACGTTCCGCAAGACCACCTTCTTCGCTCCATCGACCGGTTTGTCGATCTGAACA
GCATCCGCACCCATCTTGCCGGTTTCTACAGTCACACCGGCCGTCCGTCGGTCGATCCCGAACTGCTGATCCGGATGCTGCTGGTCGGGTATTGCTTCGG
CATCCGGTCCGAACGGCGGCTGTGCGAAGAGGTGCATCTGAACCTCGCGTATCGCTGGTTCTGCCGGCTTGACCTGAGTGACCGGGTCCCGGATCATTCG
ACATTTTCCAAGAACCGACATGGGCGTTTCCGCGACAGCGAACTTCTGCGACACCTGTTCGAGACGACTGTCGCGCGCTGCATCGCGGAGGGTCTGGTCA
GTGGCCAACGCATGGCCATCGACGCCAGCCTGATCGAGGCGGATGCCAACAAGCAGAACTCGACACCGAAGGACGACTGGGACGCGGCGCGGATTGATCC
GGCGGATGCACCCCGTGCCGTGCGCGAGTATCTCGACACGCTGGATGAGGCGGCATTCGGCGCTGCCAGCGAGGTGCAGCCCAAGTTCACCTCGCATTCG
GACCCGGCCAGCCAGTGGACCGCCGCGCGCAAGGGGCCCGCTTTCTTCAGCTATTCCGACAACTACCTGATCGACACGGATCATGGCGTGATTGTCGATG
TAGAAGCCACAAGGTCGATCCGGCAGGCCGAGGTCGGATCGACCAAGACCATGCTGAAGCGGGTGAAGGCCAGGTTCGATCTGCACCCCGAACGCCTGAT
CGCGGATACGGCTTACGGCACCGGGCCGATGCTGGGCTGGCTGGTCGATCGCAAGATCGCGCCGCACATCCCGGTTATAGACAAGTCCGGACGCAACGAC
GGCACTTGGACGCGGGCAGAGTTCGAGTGGGACGCCGAGAACGACCAATATATCTGCCCCGAGGGCCATGAGCTGAAGCAGTTCCGCCGCAACTACTCGG
ACCCGAACCGGGGACCAACCGGCAAGGGCACAGCCCGTTACCGCGCATTGAAGGACGTCTGCCAGGCGTGCCCATCCAAAGCCAAATGCTGCCCCAACGC
CGAGGCGCGCAAGATCACCCGCGAAGAGCATGAAGACGCCCGCCAAGTCGCCCGCGACATCGCCAAGACCCGCCAATACGACATCTCGATGAAGCTCCGA
AAAAAGGTCGAGATGCTATTTGCCCACCTCAAACGCATCCTTGGCTTAGGCCGACTGCGATTACGTGGTCCATGCGGCGCAAATGACGAATTCCTCCTCG
CCGCAACCGCCCAGAACCTCCGGAAACTGGCCAAGATCTTTCCCGCACCGCAGCAAACGCGAAAAGCCTGACAGGAAAGGCGCTCGCGCCGCATTTGGAA
CAGACATTTCTGCGCTCGCAAACGTTAGTTTTTCCACACAATCGGCGGAAAGTG
Protein section
ORF number : 1
ORF 1
| Length | Begin | End | Strand | Fusion ORF | |
|---|---|---|---|---|---|
| 1386 bp | 461 aa | 86 | 1471 | + | No |
Chemistry : DDE
ORF sequence :
MLGPRQEAQAALFYEFSLEDHVPQDHLLRSIDRFVDLNSIRTHLAGFYSHTGRPSVDPELLIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCRLDLSDR
VPDHSTFSKNRHGRFRDSELLRHLFETTVARCIAEGLVSGQRMAIDASLIEADANKQNSTPKDDWDAARIDPADAPRAVREYLDTLDEAAFGAASEVQPK
FTSHSDPASQWTAARKGPAFFSYSDNYLIDTDHGVIVDVEATRSIRQAEVGSTKTMLKRVKARFDLHPERLIADTAYGTGPMLGWLVDRKIAPHIPVIDK
SGRNDGTWTRAEFEWDAENDQYICPEGHELKQFRRNYSDPNRGPTGKGTARYRALKDVCQACPSKAKCCPNAEARKITREEHEDARQVARDIAKTRQYDI
SMKLRKKVEMLFAHLKRILGLGRLRLRGPCGANDEFLLAATAQNLRKLAKIFPAPQQTRKA
VPDHSTFSKNRHGRFRDSELLRHLFETTVARCIAEGLVSGQRMAIDASLIEADANKQNSTPKDDWDAARIDPADAPRAVREYLDTLDEAAFGAASEVQPK
FTSHSDPASQWTAARKGPAFFSYSDNYLIDTDHGVIVDVEATRSIRQAEVGSTKTMLKRVKARFDLHPERLIADTAYGTGPMLGWLVDRKIAPHIPVIDK
SGRNDGTWTRAEFEWDAENDQYICPEGHELKQFRRNYSDPNRGPTGKGTARYRALKDVCQACPSKAKCCPNAEARKITREEHEDARQVARDIAKTRQYDI
SMKLRKKVEMLFAHLKRILGLGRLRLRGPCGANDEFLLAATAQNLRKLAKIFPAPQQTRKA
Blast result :
Comments
ISRssp12 is 93% aa similar to ISRbac1.
References
1] ISfinder annotation (2010)
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.
2] Murrell,J.C., Schafer,H., Ferriera,S., Johnson,J., Kravitz,S., Halpern,A., Remington,K., Beeson,K., Tran,B., Rogers,Y.-H., Friedman,R. and Venter,J.C. (2006) Direct submission GenBank.