ISRbac1

  • Family IS1182
  • Group
MGE type ISRelated element(s) :
Isoform Synonym(s)
Accession numberTranspositionOriginHost
NZ_DS999533 ND Rhodobacteraceae bacterium
Rhodobacteraceae bacterium KLH11
DNA section
IS Length : 1544 bp

Ends


IR Length : 22/29

IRL : GGGCTTATTTTGTTGAAAAACTCTTCCTTGATCGAGGGCTGAACTGCTGA
IRR : GGGCGATGGTGTTGAAAAACATCGTACTGCTAGCGCAGAAATCGAGATCC

Insertion site


Left flankDirect repeatRight flankDR Length
GCACCTAATCGAAAGAGTAAATTACAGAGCGGTCATTCGCCGCGTT0

DNA sequence

GGGCTTATTTTGTTGAAAAACTCTTCCTTGATCGAGGGCTGAACTGCTGATTCAATTCCCATGTTGATCGGGAGTAATTGCGATGATGGGACCGAAGCAA
GAAGCGCAGGCGGCGCTGTTTTACGAGTTCTCGCTGGAAGAGCATGTTCCCCAAGATCATCTGCTGCGGTCGATTGAGCGGCATCTCGATCTGAGCGGCA
TTCGAGGGTATTTGTCGGATTTCTACAGCCATACTGGCCGCCCTTCGGTTGATCCTGAACTGATGATCCGCATGCTGCTGGTCGGCTACTGTTTCGGTAT
TCGGTCCGAACGGCGTCTTTGCGAAGAGGTGCATCTAAACCTGGCATATCGGTGGTTCTGCAGTCTCGATCTGACTGATCGACTGCCAGATCATTCGACC
TTTTCCAAGAACCGTCATGGTCGGTTTCGCGAGAGTGAACTCTTGCGGCACGTGTTCGAAACGACAGTGGCGCAGTGCATTGCAGAAGGTTTGGTCAGCG
GCCAGCGTATGGCGATTGATGCCAGCTTGATTGAGGCAGAAGCGACCAAGCAGCATTCAGCATCACAAGAGGAATGGGATGCTGCACAGATCGATGCCCA
GACCGCACCGCGCGCTGTTCGGAAGTATCTGGAAACCCTGGATGAGGCTGCGTTTGGTGCCGCCTCGCCAGTCAAGCCTAAGTTCATTTCATATTCCGAC
CCTGCCAGCCAATGGACGGCGGCGCACAAGGCGCCAGCATTCTTTGCGTATTCCGATAACTACCTCATCGATACAGATCACAGCGTGATTGTGGATGTCG
AAGCGACCAGATCCATCCGGCAAGCCGAAGTGGGGTCGACAAAGACGATGCTGGACCGGGTTAAAAAACGGTTCGATCTTCACCCTGAAAGGCTGATCGC
AGACACGGCCTACGGCTCTGCCCCGATGTTGGGCTGGCTTGTTGACCGGGGTATCGACCCGCATATTCCGGTGATCGACAAGGCTGGGCGCCCTGATGGT
ACATGGTCCCGCACCGACTTTGAGTGGGATGCTGAAAACGATCAATACATCTGTCCCGAAGGCCATGCGCTGAAACAGTTTCGCCGCAACTATTCGGATC
CCAACCGAGGCCTGTCCGGAAAAGGGACCGCCCGTTATCGCGCCCTCAAACTGACCTGTCAGGCCTGCCCATCGAAAGCAAAGTGCTGCCCGAACACGGA
TGCACGTAAAATCACCCGCGAAGAGCACGAAGACGCCCGGCAGATCGCACGCGATATTGCCAAGACCAGACAATACAAAGTCTCTATGAAACTGCGGAAG
AAGGTCGAGATGCTGTTCGCCCACCTCAAACGTATCCTCGGGCTGGGCAGGCTCCGATTACGTGGTCCATGTGGTGCCAACGATGAATTTCTCCTCGCCG
CCACCGCCCAAAACCTCCGCAAACTAGCCAAGATCTTTCCTGCACCGCAGCAAATGCGAACAGCCTGACTGGGAAGGCACTCGCCGCAAATTCTGGATCT
CGATTTCTGCGCTAGCAGTACGATGTTTTTCAACACCATCGCCC
Protein section
ORF number : 1

 

ORF 1
LengthBeginEndStrandFusion ORF
1396 bp461 aa731468+No
ORF function : Transposase
Chemistry : DDE

ORF sequence :

MMGPKQEAQAALFYEFSLEEHVPQDHLLRSIERHLDLSGIRGYLSDFYSHTGRPSVDPELMIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCSLDLTDR
LPDHSTFSKNRHGRFRESELLRHVFETTVAQCIAEGLVSGQRMAIDASLIEAEATKQHSASQEEWDAAQIDAQTAPRAVRKYLETLDEAAFGAASPVKPK
FISYSDPASQWTAAHKAPAFFAYSDNYLIDTDHSVIVDVEATRSIRQAEVGSTKTMLDRVKKRFDLHPERLIADTAYGSAPMLGWLVDRGIDPHIPVIDK
AGRPDGTWSRTDFEWDAENDQYICPEGHALKQFRRNYSDPNRGLSGKGTARYRALKLTCQACPSKAKCCPNTDARKITREEHEDARQIARDIAKTRQYKV
SMKLRKKVEMLFAHLKRILGLGRLRLRGPCGANDEFLLAATAQNLRKLAKIFPAPQQMRTA

 

Blast result :
Comments
ISRbac1 is 75% aa similar to ISMno9.
References
1] ISfinder annotation (2010)
2] Hill,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.