ISRbac1
- Family IS1182
- Group
Isoform Synonym(s)
Accession number | Transposition | Origin | Host |
---|---|---|---|
NZ_DS999533 | ND | Rhodobacteraceae bacterium | Rhodobacteraceae bacterium KLH11 |
DNA section
IS Length : 1544 bp
Ends
IR Length : 22/29
IRL : GGGCTTATTTTGTTGAAAAACTCTTCCTTGATCGAGGGCTGAACTGCTGA
IRR : GGGCGATGGTGTTGAAAAACATCGTACTGCTAGCGCAGAAATCGAGATCC
Insertion site
Left flank | Direct repeat | Right flank | DR Length |
---|---|---|---|
GCACCTAATCGAAAGAGTAAATT | ACAGAGCGGTCATTCGCCGCGTT | 0 |
DNA sequence
GGGCTTATTTTGTTGAAAAACTCTTCCTTGATCGAGGGCTGAACTGCTGATTCAATTCCCATGTTGATCGGGAGTAATTGCGATGATGGGACCGAAGCAA
GAAGCGCAGGCGGCGCTGTTTTACGAGTTCTCGCTGGAAGAGCATGTTCCCCAAGATCATCTGCTGCGGTCGATTGAGCGGCATCTCGATCTGAGCGGCA
TTCGAGGGTATTTGTCGGATTTCTACAGCCATACTGGCCGCCCTTCGGTTGATCCTGAACTGATGATCCGCATGCTGCTGGTCGGCTACTGTTTCGGTAT
TCGGTCCGAACGGCGTCTTTGCGAAGAGGTGCATCTAAACCTGGCATATCGGTGGTTCTGCAGTCTCGATCTGACTGATCGACTGCCAGATCATTCGACC
TTTTCCAAGAACCGTCATGGTCGGTTTCGCGAGAGTGAACTCTTGCGGCACGTGTTCGAAACGACAGTGGCGCAGTGCATTGCAGAAGGTTTGGTCAGCG
GCCAGCGTATGGCGATTGATGCCAGCTTGATTGAGGCAGAAGCGACCAAGCAGCATTCAGCATCACAAGAGGAATGGGATGCTGCACAGATCGATGCCCA
GACCGCACCGCGCGCTGTTCGGAAGTATCTGGAAACCCTGGATGAGGCTGCGTTTGGTGCCGCCTCGCCAGTCAAGCCTAAGTTCATTTCATATTCCGAC
CCTGCCAGCCAATGGACGGCGGCGCACAAGGCGCCAGCATTCTTTGCGTATTCCGATAACTACCTCATCGATACAGATCACAGCGTGATTGTGGATGTCG
AAGCGACCAGATCCATCCGGCAAGCCGAAGTGGGGTCGACAAAGACGATGCTGGACCGGGTTAAAAAACGGTTCGATCTTCACCCTGAAAGGCTGATCGC
AGACACGGCCTACGGCTCTGCCCCGATGTTGGGCTGGCTTGTTGACCGGGGTATCGACCCGCATATTCCGGTGATCGACAAGGCTGGGCGCCCTGATGGT
ACATGGTCCCGCACCGACTTTGAGTGGGATGCTGAAAACGATCAATACATCTGTCCCGAAGGCCATGCGCTGAAACAGTTTCGCCGCAACTATTCGGATC
CCAACCGAGGCCTGTCCGGAAAAGGGACCGCCCGTTATCGCGCCCTCAAACTGACCTGTCAGGCCTGCCCATCGAAAGCAAAGTGCTGCCCGAACACGGA
TGCACGTAAAATCACCCGCGAAGAGCACGAAGACGCCCGGCAGATCGCACGCGATATTGCCAAGACCAGACAATACAAAGTCTCTATGAAACTGCGGAAG
AAGGTCGAGATGCTGTTCGCCCACCTCAAACGTATCCTCGGGCTGGGCAGGCTCCGATTACGTGGTCCATGTGGTGCCAACGATGAATTTCTCCTCGCCG
CCACCGCCCAAAACCTCCGCAAACTAGCCAAGATCTTTCCTGCACCGCAGCAAATGCGAACAGCCTGACTGGGAAGGCACTCGCCGCAAATTCTGGATCT
CGATTTCTGCGCTAGCAGTACGATGTTTTTCAACACCATCGCCC
GAAGCGCAGGCGGCGCTGTTTTACGAGTTCTCGCTGGAAGAGCATGTTCCCCAAGATCATCTGCTGCGGTCGATTGAGCGGCATCTCGATCTGAGCGGCA
TTCGAGGGTATTTGTCGGATTTCTACAGCCATACTGGCCGCCCTTCGGTTGATCCTGAACTGATGATCCGCATGCTGCTGGTCGGCTACTGTTTCGGTAT
TCGGTCCGAACGGCGTCTTTGCGAAGAGGTGCATCTAAACCTGGCATATCGGTGGTTCTGCAGTCTCGATCTGACTGATCGACTGCCAGATCATTCGACC
TTTTCCAAGAACCGTCATGGTCGGTTTCGCGAGAGTGAACTCTTGCGGCACGTGTTCGAAACGACAGTGGCGCAGTGCATTGCAGAAGGTTTGGTCAGCG
GCCAGCGTATGGCGATTGATGCCAGCTTGATTGAGGCAGAAGCGACCAAGCAGCATTCAGCATCACAAGAGGAATGGGATGCTGCACAGATCGATGCCCA
GACCGCACCGCGCGCTGTTCGGAAGTATCTGGAAACCCTGGATGAGGCTGCGTTTGGTGCCGCCTCGCCAGTCAAGCCTAAGTTCATTTCATATTCCGAC
CCTGCCAGCCAATGGACGGCGGCGCACAAGGCGCCAGCATTCTTTGCGTATTCCGATAACTACCTCATCGATACAGATCACAGCGTGATTGTGGATGTCG
AAGCGACCAGATCCATCCGGCAAGCCGAAGTGGGGTCGACAAAGACGATGCTGGACCGGGTTAAAAAACGGTTCGATCTTCACCCTGAAAGGCTGATCGC
AGACACGGCCTACGGCTCTGCCCCGATGTTGGGCTGGCTTGTTGACCGGGGTATCGACCCGCATATTCCGGTGATCGACAAGGCTGGGCGCCCTGATGGT
ACATGGTCCCGCACCGACTTTGAGTGGGATGCTGAAAACGATCAATACATCTGTCCCGAAGGCCATGCGCTGAAACAGTTTCGCCGCAACTATTCGGATC
CCAACCGAGGCCTGTCCGGAAAAGGGACCGCCCGTTATCGCGCCCTCAAACTGACCTGTCAGGCCTGCCCATCGAAAGCAAAGTGCTGCCCGAACACGGA
TGCACGTAAAATCACCCGCGAAGAGCACGAAGACGCCCGGCAGATCGCACGCGATATTGCCAAGACCAGACAATACAAAGTCTCTATGAAACTGCGGAAG
AAGGTCGAGATGCTGTTCGCCCACCTCAAACGTATCCTCGGGCTGGGCAGGCTCCGATTACGTGGTCCATGTGGTGCCAACGATGAATTTCTCCTCGCCG
CCACCGCCCAAAACCTCCGCAAACTAGCCAAGATCTTTCCTGCACCGCAGCAAATGCGAACAGCCTGACTGGGAAGGCACTCGCCGCAAATTCTGGATCT
CGATTTCTGCGCTAGCAGTACGATGTTTTTCAACACCATCGCCC
Protein section
ORF number : 1
ORF 1
Length | Begin | End | Strand | Fusion ORF | |
---|---|---|---|---|---|
1396 bp | 461 aa | 73 | 1468 | + | No |
Chemistry : DDE
ORF sequence :
MMGPKQEAQAALFYEFSLEEHVPQDHLLRSIERHLDLSGIRGYLSDFYSHTGRPSVDPELMIRMLLVGYCFGIRSERRLCEEVHLNLAYRWFCSLDLTDR
LPDHSTFSKNRHGRFRESELLRHVFETTVAQCIAEGLVSGQRMAIDASLIEAEATKQHSASQEEWDAAQIDAQTAPRAVRKYLETLDEAAFGAASPVKPK
FISYSDPASQWTAAHKAPAFFAYSDNYLIDTDHSVIVDVEATRSIRQAEVGSTKTMLDRVKKRFDLHPERLIADTAYGSAPMLGWLVDRGIDPHIPVIDK
AGRPDGTWSRTDFEWDAENDQYICPEGHALKQFRRNYSDPNRGLSGKGTARYRALKLTCQACPSKAKCCPNTDARKITREEHEDARQIARDIAKTRQYKV
SMKLRKKVEMLFAHLKRILGLGRLRLRGPCGANDEFLLAATAQNLRKLAKIFPAPQQMRTA
LPDHSTFSKNRHGRFRESELLRHVFETTVAQCIAEGLVSGQRMAIDASLIEAEATKQHSASQEEWDAAQIDAQTAPRAVRKYLETLDEAAFGAASPVKPK
FISYSDPASQWTAAHKAPAFFAYSDNYLIDTDHSVIVDVEATRSIRQAEVGSTKTMLDRVKKRFDLHPERLIADTAYGSAPMLGWLVDRGIDPHIPVIDK
AGRPDGTWSRTDFEWDAENDQYICPEGHALKQFRRNYSDPNRGLSGKGTARYRALKLTCQACPSKAKCCPNTDARKITREEHEDARQIARDIAKTRQYKV
SMKLRKKVEMLFAHLKRILGLGRLRLRGPCGANDEFLLAATAQNLRKLAKIFPAPQQMRTA
Blast result :
Comments
ISRbac1 is 75% aa similar to ISMno9.
References
1] ISfinder annotation (2010)
2] Hill,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.
2] Hill,R., Ferriera,S., Johnson,J., Kravitz,S., Beeson,K., Sutton,G., Rogers,Y.-H., Friedman,R., Frazier,M. and Venter,J.C. (2008) Direct submission GenBank.